Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14180

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,037,768	+		DZA65_RS14175	0.22	+0.8
3,037,769	-		DZA65_RS14175	0.23	-0.7
3,037,783	+		DZA65_RS14175	0.24	+0.9
3,037,784	-		DZA65_RS14175	0.24	-0.9
3,037,784	-		DZA65_RS14175	0.24	-0.2
3,037,882	+		DZA65_RS14175	0.33	-1.0
3,037,882	+		DZA65_RS14175	0.33	+1.5
3,037,882	+		DZA65_RS14175	0.33	+0.8
3,037,882	+		DZA65_RS14175	0.33	+0.5
3,037,883	-		DZA65_RS14175	0.33	+0.2
3,037,883	-		DZA65_RS14175	0.33	-0.9
3,037,883	-		DZA65_RS14175	0.33	-0.5
3,037,883	-		DZA65_RS14175	0.33	-0.1
3,037,886	+		DZA65_RS14175	0.33	+0.5
3,037,887	-		DZA65_RS14175	0.33	-1.8
3,037,893	+		DZA65_RS14175	0.34	+1.0
3,037,894	-		DZA65_RS14175	0.34	-2.3
3,037,894	-		DZA65_RS14175	0.34	-1.8
3,037,909	+		DZA65_RS14175	0.35	-1.9
3,037,941	+		DZA65_RS14175	0.38	+1.3
3,037,941	+		DZA65_RS14175	0.38	-0.3
3,037,942	-		DZA65_RS14175	0.38	-1.0
3,037,977	+		DZA65_RS14175	0.41	+1.8
3,038,027	+		DZA65_RS14175	0.45	+0.8
3,038,027	+		DZA65_RS14175	0.45	-0.5
3,038,027	+		DZA65_RS14175	0.45	-1.8
3,038,027	+		DZA65_RS14175	0.45	+1.0
3,038,027	+		DZA65_RS14175	0.45	-1.3
3,038,027	+		DZA65_RS14175	0.45	-1.3
3,038,027	+		DZA65_RS14175	0.45	+0.1
3,038,028	-		DZA65_RS14175	0.45	+0.4
3,038,028	-		DZA65_RS14175	0.45	+0.2
3,038,028	-		DZA65_RS14175	0.45	-1.0
3,038,085	+		DZA65_RS14175	0.50	+1.3
3,038,085	+		DZA65_RS14175	0.50	+1.4
3,038,086	-				+0.5
3,038,086	-		DZA65_RS14175	0.51	-0.2
3,038,089	+		DZA65_RS14175	0.51	-1.5
3,038,099	+		DZA65_RS14175	0.52	-0.5
3,038,099	+		DZA65_RS14175	0.52	+0.9
3,038,099	+		DZA65_RS14175	0.52	+0.1
3,038,099	+		DZA65_RS14175	0.52	+0.9
3,038,099	+		DZA65_RS14175	0.52	+1.7
3,038,099	+		DZA65_RS14175	0.52	+0.7
3,038,100	-		DZA65_RS14175	0.52	+0.3
3,038,100	-		DZA65_RS14175	0.52	+0.7
3,038,100	-		DZA65_RS14175	0.52	+3.3
3,038,100	-		DZA65_RS14175	0.52	+0.1
3,038,228	-		DZA65_RS14175	0.63	-1.8
3,038,228	-		DZA65_RS14175	0.63	-2.3
3,038,377	+		DZA65_RS14175	0.76	-0.3
3,038,377	+		DZA65_RS14175	0.76	-0.0
3,038,377	+		DZA65_RS14175	0.76	-0.5
3,038,377	+		DZA65_RS14175	0.76	+1.7
3,038,382	+		DZA65_RS14175	0.77	-0.8
3,038,382	+		DZA65_RS14175	0.77	-1.5
3,038,383	-		DZA65_RS14175	0.77	+0.7
3,038,383	-		DZA65_RS14175	0.77	+1.5
3,038,383	-		DZA65_RS14175	0.77	-1.3
3,038,389	+		DZA65_RS14175	0.77	+0.2
3,038,389	+		DZA65_RS14175	0.77	-1.0
3,038,436	-		DZA65_RS14175	0.81	-0.7
3,038,456	+		DZA65_RS14175	0.83	-0.3
3,038,456	+		DZA65_RS14175	0.83	+0.9
3,038,456	+		DZA65_RS14175	0.83	+3.0
3,038,457	-		DZA65_RS14175	0.83	+0.5
3,038,457	-		DZA65_RS14175	0.83	-0.5
3,038,457	-		DZA65_RS14175	0.83	+0.5
3,038,457	-		DZA65_RS14175	0.83	+0.1
3,038,472	+		DZA65_RS14175	0.85	-0.3
3,038,472	+		DZA65_RS14175	0.85	+0.5
3,038,472	+		DZA65_RS14175	0.85	+0.4
3,038,472	+		DZA65_RS14175	0.85	+0.5
3,038,473	-		DZA65_RS14175	0.85	-0.5
3,038,473	-		DZA65_RS14175	0.85	-1.9
3,038,473	-		DZA65_RS14175	0.85	+0.5
3,038,474	+		DZA65_RS14175	0.85	-0.0
3,038,474	+		DZA65_RS14175	0.85	+0.3
3,038,474	+		DZA65_RS14175	0.85	+0.1
3,038,475	-		DZA65_RS14175	0.85	-0.8
3,038,475	-		DZA65_RS14175	0.85	-1.8
3,038,475	-		DZA65_RS14175	0.85	-0.0
3,038,475	-		DZA65_RS14175	0.85	+1.8
3,038,531	+		DZA65_RS14175	0.90	-0.0
3,038,628	+				+0.3
3,038,629	-				-0.9
3,038,629	-				+1.0
3,038,629	-				+1.0
3,038,630	+				-0.5
3,038,630	+				-0.1
3,038,630	+				+0.2
3,038,630	+				-0.5
3,038,631	-				-0.3
3,038,631	-				+0.2
3,038,631	-				+0.5
3,038,631	-				+1.3
3,038,631	-				-0.2
3,038,631	-				-0.5
3,038,741	+				-0.3
3,038,741	+				+0.8
3,038,742	-				-1.7
3,038,779	+				-0.4
3,038,779	+				-0.8
3,038,779	+				-0.0
3,038,779	+				-0.0
3,038,779	+				+0.5
3,038,779	+				+1.1
3,038,779	+				-0.9
3,038,779	+				-1.6
3,038,779	+				+0.8
3,038,779	+				+1.5
3,038,779	+				+0.5
3,038,780	-				+0.2
3,038,780	-				-1.5
3,038,780	-				-0.3
3,038,780	-				-0.4
3,038,780	-				-1.0
3,038,780	-				-0.5
3,038,780	-				+0.1
3,038,780	-				-1.0
3,038,783	+				-1.3
3,038,783	+				+0.4
3,038,783	+				+0.3
3,038,784	-				+0.1
3,038,784	-				-0.0
3,038,784	-				+0.9
3,038,784	-				-1.3
3,038,784	-				-0.8
3,038,784	-				-0.0
3,038,848	+				-2.0
3,038,848	+				-2.0
3,038,848	+				+0.7
3,038,935	+		DZA65_RS14180	0.11	+0.9
3,038,939	+		DZA65_RS14180	0.12	-0.5
3,038,939	+		DZA65_RS14180	0.12	+0.4
3,038,939	+		DZA65_RS14180	0.12	+1.0
3,038,939	+		DZA65_RS14180	0.12	-0.8
3,038,940	-		DZA65_RS14180	0.12	-0.6
3,038,940	-		DZA65_RS14180	0.12	-0.5
3,038,940	-		DZA65_RS14180	0.12	+2.3
3,038,940	-		DZA65_RS14180	0.12	+0.5
3,038,996	+		DZA65_RS14180	0.15	+1.8
3,039,015	+		DZA65_RS14180	0.16	-1.2
3,039,015	+		DZA65_RS14180	0.16	+0.8
3,039,015	+		DZA65_RS14180	0.16	-0.0
3,039,015	+		DZA65_RS14180	0.16	+1.0
3,039,015	+		DZA65_RS14180	0.16	-0.8
3,039,016	-		DZA65_RS14180	0.16	+1.0
3,039,016	-		DZA65_RS14180	0.16	+2.3
3,039,016	-		DZA65_RS14180	0.16	-0.2
3,039,030	+		DZA65_RS14180	0.16	+0.1
3,039,030	+		DZA65_RS14180	0.16	-0.8
3,039,030	+				-0.0
3,039,030	+		DZA65_RS14180	0.16	+2.6
3,039,048	-		DZA65_RS14180	0.17	-0.1
3,039,060	+		DZA65_RS14180	0.18	+1.2
3,039,060	+				+0.9
3,039,183	+		DZA65_RS14180	0.24	-0.5
3,039,210	+		DZA65_RS14180	0.26	-2.0
3,039,210	+		DZA65_RS14180	0.26	-0.5
3,039,211	-		DZA65_RS14180	0.26	-1.3
3,039,211	-		DZA65_RS14180	0.26	-1.6
3,039,211	-		DZA65_RS14180	0.26	-1.5
3,039,211	-		DZA65_RS14180	0.26	+0.8
3,039,374	+		DZA65_RS14180	0.34	-0.3
3,039,374	+		DZA65_RS14180	0.34	-0.4
3,039,374	+		DZA65_RS14180	0.34	+1.2
3,039,374	+		DZA65_RS14180	0.34	+1.1
3,039,374	+		DZA65_RS14180	0.34	-0.6
3,039,375	-		DZA65_RS14180	0.34	+0.0
3,039,375	-		DZA65_RS14180	0.34	-1.3
3,039,375	-		DZA65_RS14180	0.34	+1.0
3,039,375	-				-1.5
3,039,375	-		DZA65_RS14180	0.34	-0.3
3,039,375	-		DZA65_RS14180	0.34	-0.6
3,039,474	+		DZA65_RS14180	0.39	+0.5
3,039,476	+		DZA65_RS14180	0.40	+0.1
3,039,483	+		DZA65_RS14180	0.40	+0.2
3,039,484	-		DZA65_RS14180	0.40	+0.1
3,039,484	-		DZA65_RS14180	0.40	+0.1
3,039,552	+		DZA65_RS14180	0.44	+0.5
3,039,603	+		DZA65_RS14180	0.46	-0.3
3,039,603	+		DZA65_RS14180	0.46	+0.8
3,039,603	+		DZA65_RS14180	0.46	-0.1
3,039,603	+		DZA65_RS14180	0.46	-0.5
3,039,608	+		DZA65_RS14180	0.46	+1.1
3,039,629	+		DZA65_RS14180	0.48	-1.5
3,039,632	+		DZA65_RS14180	0.48	-0.8
3,039,632	+		DZA65_RS14180	0.48	+0.1
3,039,633	-		DZA65_RS14180	0.48	+0.1
3,039,653	+		DZA65_RS14180	0.49	+0.3
3,039,653	+		DZA65_RS14180	0.49	-2.0
3,039,653	+		DZA65_RS14180	0.49	+0.0
3,039,653	+		DZA65_RS14180	0.49	+2.1
3,039,653	+		DZA65_RS14180	0.49	+1.3
3,039,653	+		DZA65_RS14180	0.49	-0.0
3,039,653	+		DZA65_RS14180	0.49	-0.8
3,039,653	+		DZA65_RS14180	0.49	+0.1
3,039,653	+		DZA65_RS14180	0.49	+2.1
3,039,654	-		DZA65_RS14180	0.49	+0.9
3,039,654	-		DZA65_RS14180	0.49	-0.2
3,039,654	-		DZA65_RS14180	0.49	+1.7
3,039,697	+		DZA65_RS14180	0.51	-0.1
3,039,752	-		DZA65_RS14180	0.54	+0.1
3,039,798	+		DZA65_RS14180	0.56	+1.1
3,039,798	+		DZA65_RS14180	0.56	+1.5
3,039,799	-		DZA65_RS14180	0.56	-1.0
3,039,799	-		DZA65_RS14180	0.56	+0.2
3,039,947	+		DZA65_RS14180	0.64	+0.2
3,039,966	+		DZA65_RS14180	0.65	-1.3
3,039,967	-		DZA65_RS14180	0.65	-0.3
3,039,967	-		DZA65_RS14180	0.65	-0.8
3,040,132	+		DZA65_RS14180	0.74	+1.4
3,040,132	+		DZA65_RS14180	0.74	-0.0
3,040,132	+		DZA65_RS14180	0.74	-0.2
3,040,133	-		DZA65_RS14180	0.74	+0.3
3,040,133	-		DZA65_RS14180	0.74	-0.9
3,040,142	+		DZA65_RS14180	0.74	+0.1
3,040,143	-		DZA65_RS14180	0.74	-0.9
3,040,143	-		DZA65_RS14180	0.74	-0.3
3,040,155	+		DZA65_RS14180	0.75	+0.1
3,040,155	+		DZA65_RS14180	0.75	-0.6
3,040,156	-		DZA65_RS14180	0.75	+0.2
3,040,156	-		DZA65_RS14180	0.75	-1.9
3,040,156	-		DZA65_RS14180	0.75	-0.2
3,040,179	+		DZA65_RS14180	0.76	+2.1
3,040,179	+		DZA65_RS14180	0.76	+1.3
3,040,186	+		DZA65_RS14180	0.77	+2.4
3,040,186	+		DZA65_RS14180	0.77	-0.0
3,040,187	-		DZA65_RS14180	0.77	+0.5
3,040,187	-		DZA65_RS14180	0.77	+0.0
3,040,187	-		DZA65_RS14180	0.77	+0.1
3,040,187	-		DZA65_RS14180	0.77	-0.6
3,040,187	-				-0.5
3,040,188	+		DZA65_RS14180	0.77	-1.5
3,040,188	+		DZA65_RS14180	0.77	+0.4
3,040,188	+		DZA65_RS14180	0.77	+1.5
3,040,189	-		DZA65_RS14180	0.77	-0.3
3,040,189	-		DZA65_RS14180	0.77	-0.2
3,040,221	+		DZA65_RS14180	0.78	-1.0
3,040,221	+		DZA65_RS14180	0.78	+1.7
3,040,222	-		DZA65_RS14180	0.78	-0.3
3,040,222	-		DZA65_RS14180	0.78	+0.5
3,040,242	+		DZA65_RS14180	0.79	+0.6
3,040,243	-		DZA65_RS14180	0.80	-2.6
3,040,243	-		DZA65_RS14180	0.80	+0.7
3,040,243	-		DZA65_RS14180	0.80	+0.3
3,040,243	-		DZA65_RS14180	0.80	-0.2
3,040,324	-		DZA65_RS14180	0.84	-1.4
3,040,326	+		DZA65_RS14180	0.84	-0.0
3,040,327	-		DZA65_RS14180	0.84	-1.0
3,040,327	-		DZA65_RS14180	0.84	-0.5
3,040,327	-		DZA65_RS14180	0.84	+0.4
3,040,361	+		DZA65_RS14180	0.86	+1.5
3,040,362	-		DZA65_RS14180	0.86	+0.2
3,040,362	-		DZA65_RS14180	0.86	-0.5
3,040,424	-		DZA65_RS14180	0.89	+0.4
3,040,427	+		DZA65_RS14180	0.89	-0.1
3,040,427	+		DZA65_RS14180	0.89	+1.0
3,040,427	+		DZA65_RS14180	0.89	+1.0
3,040,427	+		DZA65_RS14180	0.89	+0.2
3,040,427	+		DZA65_RS14180	0.89	-1.5
3,040,428	-		DZA65_RS14180	0.89	+0.0
3,040,428	-		DZA65_RS14180	0.89	+0.3
3,040,428	-		DZA65_RS14180	0.89	-1.3
3,040,428	-		DZA65_RS14180	0.89	-2.0
3,040,446	+				-0.9
3,040,448	+				+0.8
3,040,448	+				+0.3
3,040,448	+				+0.2
3,040,448	+				-0.3
3,040,448	+				-0.5
3,040,448	+				+1.1
3,040,448	+				+0.3
3,040,449	-				-0.5
3,040,449	-				+0.5
3,040,449	-				-0.2
3,040,449	-				+0.1
3,040,449	-				+0.5
3,040,449	-				-0.0
3,040,449	-				+1.1
3,040,449	-				-0.7
3,040,449	-				-0.0
3,040,449	-				+0.1
3,040,449	-				-0.6
3,040,464	+				-0.6
3,040,465	-				-1.5
3,040,465	-				-1.3
3,040,465	-				+0.6
3,040,465	-				+0.5
3,040,466	+				+0.2
3,040,466	+				-2.5
3,040,466	+				-1.8
3,040,467	-				+0.5
3,040,467	-				+1.5
3,040,467	-				-0.5
3,040,467	-				-1.0
3,040,467	-				-0.4
3,040,573	+				+0.1
3,040,573	+				+2.7
3,040,573	+				+0.2
3,040,573	+				+0.1
3,040,574	-				-2.0
3,040,574	-				+1.4
3,040,574	-				+0.8
3,040,590	+				+0.3
3,040,590	+				-0.5
3,040,591	-				-0.3
3,040,596	-				+1.1
3,040,620	+				+1.0
3,040,620	+				-0.9
3,040,621	-				-0.9
3,040,621	-				-0.2
3,040,622	+				+0.5
3,040,622	+				-0.7
3,040,622	+				-2.0
3,040,623	-				-0.7
3,040,623	-				+0.9
3,040,623	-				+0.5
3,040,623	-				-1.6
3,040,635	+				-0.1
3,040,636	-				+0.2
3,040,636	-				-0.0
3,040,653	+				-0.7
3,040,653	+				+0.3
3,040,653	+				+0.5
3,040,654	-				-0.2
3,040,654	-				-0.2
3,040,654	-				-0.2
3,040,654	-				-1.3
3,040,657	+				+1.5
3,040,657	+				-1.2
3,040,657	+				+0.5
3,040,657	+				+1.5
3,040,657	+				-1.5
3,040,657	+				-0.0
3,040,657	+				+0.1
3,040,658	-				-0.3
3,040,658	-				+2.1
3,040,658	-				-1.2
3,040,658	-				-0.9
3,040,658	-				+0.1
3,040,658	-				+0.2
3,040,658	-				+1.2
3,040,777	+				+0.4
3,040,785	+				+0.9
3,040,891	+				+0.1
3,040,891	+				-1.6
3,040,892	-				+0.8
3,040,916	+				-0.6
3,040,997	+		DZA65_RS14185	0.15	-1.8
3,040,997	+		DZA65_RS14185	0.15	+0.1
3,040,997	+		DZA65_RS14185	0.15	+1.1
3,040,997	+		DZA65_RS14185	0.15	-0.6
3,040,998	-		DZA65_RS14185	0.15	+0.1
3,040,998	-		DZA65_RS14185	0.15	+0.4
3,040,998	-		DZA65_RS14185	0.15	-0.8
3,041,008	+		DZA65_RS14185	0.16	+0.2
3,041,008	+		DZA65_RS14185	0.16	+1.9
3,041,009	-		DZA65_RS14185	0.16	-1.3
3,041,009	-				+1.1
3,041,009	-		DZA65_RS14185	0.16	+0.3
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3,041,053	-		DZA65_RS14185	0.19	-1.0
3,041,086	+		DZA65_RS14185	0.21	+0.1
3,041,086	+		DZA65_RS14185	0.21	+0.5
3,041,086	+		DZA65_RS14185	0.21	+0.1
3,041,130	-		DZA65_RS14185	0.24	-0.3
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3,041,134	+		DZA65_RS14185	0.25	-0.5
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3,041,134	+		DZA65_RS14185	0.25	-0.8
3,041,134	+		DZA65_RS14185	0.25	-0.7
3,041,135	-		DZA65_RS14185	0.25	+3.2
3,041,135	-		DZA65_RS14185	0.25	-1.8
3,041,135	-		DZA65_RS14185	0.25	-2.6
3,041,135	-		DZA65_RS14185	0.25	+0.2
3,041,157	-		DZA65_RS14185	0.26	+1.0
3,041,157	-		DZA65_RS14185	0.26	+0.7
3,041,188	+		DZA65_RS14185	0.28	-0.6
3,041,189	-		DZA65_RS14185	0.29	+1.3
3,041,189	-		DZA65_RS14185	0.29	-0.1
3,041,189	-		DZA65_RS14185	0.29	+0.3
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3,041,536	+		DZA65_RS14185	0.53	-1.9
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3,041,537	-		DZA65_RS14185	0.53	-1.8
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3,041,543	+		DZA65_RS14185	0.53	-1.6
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3,041,586	-				-0.0
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3,041,586	-		DZA65_RS14185	0.56	+1.2
3,041,586	-		DZA65_RS14185	0.56	+0.1
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3,041,586	-		DZA65_RS14185	0.56	-0.3
3,041,586	-		DZA65_RS14185	0.56	+1.0
3,041,586	-		DZA65_RS14185	0.56	+0.5