Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14110

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,026,892	+				-0.6
3,026,892	+				+0.5
3,026,892	+				-0.5
3,026,893	-				+0.5
3,026,981	+				+0.8
3,026,982	-				+0.6
3,027,002	+				+1.7
3,027,002	+				-1.3
3,027,002	+				-0.5
3,027,002	+				-0.5
3,027,002	+				+0.5
3,027,002	+				-0.2
3,027,002	+				+0.9
3,027,002	+				-0.2
3,027,002	+				+0.3
3,027,002	+				-1.5
3,027,003	-				-1.1
3,027,003	-				+0.4
3,027,003	-				-0.5
3,027,003	-				-0.5
3,027,003	-				+1.1
3,027,003	-				-2.6
3,027,003	-				-0.3
3,027,003	-				+3.1
3,027,003	-				-0.7
3,027,003	-				+2.5
3,027,003	-				+0.2
3,027,003	-				-0.5
3,027,003	-				-1.2
3,027,003	-				-1.1
3,027,003	-				-3.1
3,027,085	-		DZA65_RS14105	0.24	+0.5
3,027,087	+		DZA65_RS14105	0.25	+0.4
3,027,087	+		DZA65_RS14105	0.25	-0.5
3,027,087	+		DZA65_RS14105	0.25	+0.5
3,027,087	+		DZA65_RS14105	0.25	-0.9
3,027,088	-		DZA65_RS14105	0.25	-0.5
3,027,088	-		DZA65_RS14105	0.25	+0.0
3,027,140	+		DZA65_RS14105	0.51	-0.5
3,027,141	-		DZA65_RS14105	0.52	-0.7
3,027,141	-		DZA65_RS14105	0.52	-2.6
3,027,193	+		DZA65_RS14105	0.78	+2.1
3,027,194	-		DZA65_RS14105	0.78	-0.9
3,027,211	+		DZA65_RS14105	0.87	-0.2
3,027,229	+				-0.2
3,027,230	-				-0.2
3,027,230	-				+0.5
3,027,230	-				+1.1
3,027,230	-				-0.5
3,027,230	-				-0.2
3,027,230	-				+0.8
3,027,283	+				-1.5
3,027,283	+				-1.5
3,027,283	+				-0.3
3,027,283	+				+0.1
3,027,283	+				+0.4
3,027,283	+				+0.7
3,027,283	+				+0.4
3,027,283	+				+2.3
3,027,284	-				-0.0
3,027,284	-				-1.1
3,027,284	-				-0.5
3,027,284	-				-1.8
3,027,284	-				+1.4
3,027,284	-				-0.9
3,027,284	-				-1.8
3,027,284	-				-0.7
3,027,284	-				-0.1
3,027,376	+				+0.2
3,027,377	-				+1.8
3,027,510	-				+0.5
3,027,510	-				+1.9
3,027,532	+				-1.1
3,027,532	+				+1.2
3,027,532	+				-0.5
3,027,532	+				+1.9
3,027,533	-				+1.9
3,027,533	-				-1.6
3,027,533	-				-1.1
3,027,535	-				-0.5
3,027,575	+				-0.5
3,027,586	+				-1.1
3,027,618	+				-0.2
3,027,621	-				+0.3
3,027,621	-				+1.5
3,027,621	-				+0.2
3,027,621	-				-0.7
3,027,636	+				+0.8
3,027,636	+				-0.1
3,027,643	-				-0.8
3,027,664	+				+0.9
3,027,664	+				-0.3
3,027,665	-				-0.7
3,027,665	-				+1.9
3,027,676	-				-0.2
3,027,677	+				+0.8
3,027,677	+				-2.2
3,027,678	-				-0.5
3,027,678	-				-0.1
3,027,678	-				+0.5
3,027,678	-				-1.1
3,027,717	+				-0.1
3,027,718	-				+0.5
3,027,732	+				-0.8
3,027,733	-				-0.1
3,027,806	+				+0.2
3,027,806	+				-0.1
3,027,814	+				+0.1
3,027,814	+				+0.3
3,027,814	+				+0.1
3,027,815	-				-0.2
3,027,815	-				+1.0
3,027,815	-				+1.3
3,027,818	+				-0.1
3,027,818	+				-0.3
3,027,818	+				-0.2
3,027,818	+				-0.3
3,027,819	-				-0.2
3,027,819	-				-1.1
3,027,819	-				+0.1
3,027,833	+				+2.5
3,027,854	+				-0.8
3,027,855	-				+0.3
3,027,920	+				+0.5
3,027,920	+				-0.3
3,027,921	-				+0.7
3,027,955	+				+0.4
3,027,955	+				-1.8
3,027,955	+				-0.5
3,027,956	-				+0.5
3,027,961	+				-0.7
3,027,961	+				-1.3
3,027,962	-				+0.5
3,027,962	-				-0.1
3,028,059	-		DZA65_RS14110	0.16	-0.9
3,028,124	+		DZA65_RS14110	0.21	+0.3
3,028,124	+		DZA65_RS14110	0.21	+0.2
3,028,125	-		DZA65_RS14110	0.21	+2.3
3,028,125	-		DZA65_RS14110	0.21	+1.4
3,028,125	-		DZA65_RS14110	0.21	+0.3
3,028,125	-		DZA65_RS14110	0.21	+1.1
3,028,130	+		DZA65_RS14110	0.21	-0.6
3,028,160	+		DZA65_RS14110	0.24	-0.3
3,028,160	+		DZA65_RS14110	0.24	-1.1
3,028,161	-		DZA65_RS14110	0.24	-0.5
3,028,161	-		DZA65_RS14110	0.24	-0.4
3,028,161	-		DZA65_RS14110	0.24	-2.5
3,028,161	-		DZA65_RS14110	0.24	+1.9
3,028,161	-		DZA65_RS14110	0.24	-1.1
3,028,161	-		DZA65_RS14110	0.24	-1.7
3,028,161	-		DZA65_RS14110	0.24	-0.3
3,028,161	-		DZA65_RS14110	0.24	-0.5
3,028,168	+		DZA65_RS14110	0.24	+0.1
3,028,169	-		DZA65_RS14110	0.24	-2.0
3,028,169	-		DZA65_RS14110	0.24	-1.3
3,028,169	-		DZA65_RS14110	0.24	-0.3
3,028,169	-		DZA65_RS14110	0.24	+1.2
3,028,172	-		DZA65_RS14110	0.24	-0.3
3,028,172	-		DZA65_RS14110	0.24	-0.7
3,028,172	-		DZA65_RS14110	0.24	-1.1
3,028,178	+		DZA65_RS14110	0.25	-1.6
3,028,178	+		DZA65_RS14110	0.25	-2.3
3,028,178	+		DZA65_RS14110	0.25	+0.3
3,028,179	-		DZA65_RS14110	0.25	-0.9
3,028,179	-		DZA65_RS14110	0.25	-0.2
3,028,179	-		DZA65_RS14110	0.25	-0.3
3,028,179	-		DZA65_RS14110	0.25	-0.6
3,028,242	+		DZA65_RS14110	0.29	-0.2
3,028,242	+		DZA65_RS14110	0.29	+1.5
3,028,242	+		DZA65_RS14110	0.29	-0.8
3,028,242	+		DZA65_RS14110	0.29	-0.2
3,028,243	-		DZA65_RS14110	0.29	-0.5
3,028,243	-		DZA65_RS14110	0.29	-0.3
3,028,243	-		DZA65_RS14110	0.29	+0.1
3,028,245	-		DZA65_RS14110	0.29	+0.1
3,028,406	+		DZA65_RS14110	0.41	+0.2
3,028,498	-		DZA65_RS14110	0.47	-1.3
3,028,510	+		DZA65_RS14110	0.48	+0.9
3,028,510	+		DZA65_RS14110	0.48	-2.9
3,028,511	-		DZA65_RS14110	0.48	-0.2
3,028,511	-		DZA65_RS14110	0.48	+1.1
3,028,511	-		DZA65_RS14110	0.48	+0.9
3,028,511	-		DZA65_RS14110	0.48	-0.4
3,028,572	+		DZA65_RS14110	0.52	-1.1
3,028,572	+		DZA65_RS14110	0.52	+0.5
3,028,572	+		DZA65_RS14110	0.52	+0.5
3,028,572	+		DZA65_RS14110	0.52	+0.2
3,028,573	-		DZA65_RS14110	0.52	+0.4
3,028,573	-		DZA65_RS14110	0.52	-1.1
3,028,573	-		DZA65_RS14110	0.52	+0.3
3,028,573	-		DZA65_RS14110	0.52	+1.6
3,028,652	+		DZA65_RS14110	0.58	+0.6
3,028,653	-		DZA65_RS14110	0.58	-1.2
3,028,653	-		DZA65_RS14110	0.58	+1.3
3,028,653	-		DZA65_RS14110	0.58	+1.9
3,028,761	-		DZA65_RS14110	0.65	-1.3
3,028,787	+		DZA65_RS14110	0.67	-1.0
3,028,787	+		DZA65_RS14110	0.67	-0.5
3,028,787	+		DZA65_RS14110	0.67	+0.2
3,028,788	-		DZA65_RS14110	0.67	-0.7
3,028,792	+		DZA65_RS14110	0.68	+0.5
3,028,793	-		DZA65_RS14110	0.68	-1.1
3,028,793	-		DZA65_RS14110	0.68	-0.1
3,028,808	+		DZA65_RS14110	0.69	-1.1
3,028,845	+		DZA65_RS14110	0.71	-1.1
3,028,845	+		DZA65_RS14110	0.71	+0.0
3,028,845	+		DZA65_RS14110	0.71	-1.5
3,028,845	+		DZA65_RS14110	0.71	+0.5
3,028,845	+		DZA65_RS14110	0.71	-0.9
3,028,845	+				+1.3
3,028,845	+		DZA65_RS14110	0.71	-1.1
3,028,845	+		DZA65_RS14110	0.71	-1.0
3,028,845	+		DZA65_RS14110	0.71	-0.7
3,028,846	-		DZA65_RS14110	0.71	-0.7
3,028,846	-		DZA65_RS14110	0.71	+0.8
3,028,846	-		DZA65_RS14110	0.71	+0.9
3,028,846	-		DZA65_RS14110	0.71	-1.2
3,028,846	-		DZA65_RS14110	0.71	+0.9
3,028,846	-		DZA65_RS14110	0.71	-0.5
3,028,846	-		DZA65_RS14110	0.71	+0.2
3,028,847	+		DZA65_RS14110	0.71	-1.4
3,028,848	-		DZA65_RS14110	0.71	+0.4
3,028,848	-		DZA65_RS14110	0.71	-0.5
3,028,848	-		DZA65_RS14110	0.71	-0.5
3,028,912	+		DZA65_RS14110	0.76	-0.3
3,028,926	+		DZA65_RS14110	0.77	+0.2
3,028,926	+		DZA65_RS14110	0.77	+0.1
3,028,926	+		DZA65_RS14110	0.77	-1.5
3,028,926	+		DZA65_RS14110	0.77	-0.6
3,028,926	+		DZA65_RS14110	0.77	-1.3
3,028,926	+		DZA65_RS14110	0.77	+1.3
3,028,926	+		DZA65_RS14110	0.77	-1.1
3,028,926	+		DZA65_RS14110	0.77	+0.3
3,028,927	-		DZA65_RS14110	0.77	-1.1
3,028,927	-		DZA65_RS14110	0.77	+0.3
3,028,927	-		DZA65_RS14110	0.77	+0.5
3,028,927	-		DZA65_RS14110	0.77	-0.8
3,028,927	-		DZA65_RS14110	0.77	+0.2
3,028,927	-		DZA65_RS14110	0.77	+0.8
3,028,955	-		DZA65_RS14110	0.79	-2.1
3,028,955	-		DZA65_RS14110	0.79	-2.1
3,028,955	-		DZA65_RS14110	0.79	-1.6
3,028,955	-		DZA65_RS14110	0.79	-2.0
3,028,955	-		DZA65_RS14110	0.79	-0.3
3,028,955	-		DZA65_RS14110	0.79	-0.1
3,028,955	-		DZA65_RS14110	0.79	-2.2
3,028,959	-		DZA65_RS14110	0.79	+1.9
3,028,959	-		DZA65_RS14110	0.79	-1.6
3,029,052	+		DZA65_RS14110	0.86	-0.1
3,029,052	+		DZA65_RS14110	0.86	-0.5
3,029,052	+		DZA65_RS14110	0.86	+0.8
3,029,052	+		DZA65_RS14110	0.86	+0.9
3,029,052	+		DZA65_RS14110	0.86	-0.1
3,029,052	+		DZA65_RS14110	0.86	-0.5
3,029,052	+		DZA65_RS14110	0.86	-0.1
3,029,052	+		DZA65_RS14110	0.86	+0.6
3,029,053	-		DZA65_RS14110	0.86	-1.6
3,029,053	-		DZA65_RS14110	0.86	+0.1
3,029,053	-		DZA65_RS14110	0.86	+0.5
3,029,053	-		DZA65_RS14110	0.86	-0.9
3,029,053	-		DZA65_RS14110	0.86	-0.2
3,029,053	-		DZA65_RS14110	0.86	+0.2
3,029,053	-		DZA65_RS14110	0.86	+0.0
3,029,053	-		DZA65_RS14110	0.86	+0.5
3,029,053	-		DZA65_RS14110	0.86	-0.5
3,029,053	-		DZA65_RS14110	0.86	-0.5
3,029,054	+		DZA65_RS14110	0.86	-0.6
3,029,054	+		DZA65_RS14110	0.86	-0.1
3,029,055	-		DZA65_RS14110	0.86	-0.9
3,029,055	-		DZA65_RS14110	0.86	+0.9
3,029,055	-		DZA65_RS14110	0.86	+0.2
3,029,055	-		DZA65_RS14110	0.86	-0.8
3,029,055	-		DZA65_RS14110	0.86	-0.8
3,029,055	-		DZA65_RS14110	0.86	+0.3
3,029,055	-		DZA65_RS14110	0.86	-1.1
3,029,055	-		DZA65_RS14110	0.86	+0.5
3,029,055	-		DZA65_RS14110	0.86	+0.2
3,029,055	-		DZA65_RS14110	0.86	+0.3
3,029,055	-		DZA65_RS14110	0.86	+0.3
3,029,057	+		DZA65_RS14110	0.86	-0.7
3,029,057	+		DZA65_RS14110	0.86	-0.1
3,029,057	+		DZA65_RS14110	0.86	-1.8
3,029,057	+		DZA65_RS14110	0.86	+0.8
3,029,057	+		DZA65_RS14110	0.86	-1.2
3,029,057	+		DZA65_RS14110	0.86	-0.5
3,029,057	+		DZA65_RS14110	0.86	-1.1
3,029,057	+		DZA65_RS14110	0.86	-1.3
3,029,057	+		DZA65_RS14110	0.86	-2.1
3,029,057	+		DZA65_RS14110	0.86	+0.1
3,029,057	+		DZA65_RS14110	0.86	-0.9
3,029,057	+		DZA65_RS14110	0.86	-0.2
3,029,058	-		DZA65_RS14110	0.86	-0.7
3,029,058	-		DZA65_RS14110	0.86	+0.9
3,029,058	-		DZA65_RS14110	0.86	+0.2
3,029,058	-		DZA65_RS14110	0.86	-0.9
3,029,058	-		DZA65_RS14110	0.86	-1.5
3,029,058	-		DZA65_RS14110	0.86	-0.2
3,029,058	-		DZA65_RS14110	0.86	-1.8
3,029,058	-		DZA65_RS14110	0.86	-0.5
3,029,058	-		DZA65_RS14110	0.86	+0.8
3,029,058	-		DZA65_RS14110	0.86	-0.8
3,029,058	-		DZA65_RS14110	0.86	+0.3
3,029,058	-		DZA65_RS14110	0.86	-0.5
3,029,058	-		DZA65_RS14110	0.86	-1.1
3,029,058	-		DZA65_RS14110	0.86	+0.9
3,029,078	+		DZA65_RS14110	0.87	+0.5
3,029,079	-		DZA65_RS14110	0.87	-0.3
3,029,079	-		DZA65_RS14110	0.87	+0.9
3,029,079	-		DZA65_RS14110	0.87	-0.8
3,029,079	-		DZA65_RS14110	0.87	-0.1
3,029,079	-		DZA65_RS14110	0.87	+0.5
3,029,079	-		DZA65_RS14110	0.87	-0.5
3,029,079	-		DZA65_RS14110	0.87	+1.0
3,029,079	-		DZA65_RS14110	0.87	-0.3
3,029,107	-		DZA65_RS14110	0.89	-0.3
3,029,107	-		DZA65_RS14110	0.89	-0.9
3,029,108	+		DZA65_RS14110	0.89	-0.2
3,029,108	+		DZA65_RS14110	0.89	-0.4
3,029,108	+		DZA65_RS14110	0.89	-0.8
3,029,108	+		DZA65_RS14110	0.89	+1.3
3,029,108	+		DZA65_RS14110	0.89	-0.9
3,029,109	-		DZA65_RS14110	0.90	+0.5
3,029,109	-		DZA65_RS14110	0.90	+0.3
3,029,109	-		DZA65_RS14110	0.90	+1.0
3,029,121	-				-0.5
3,029,230	-				-1.1
3,029,237	+				-0.8
3,029,244	-				-0.9
3,029,256	+				+0.2
3,029,282	+				-2.3
3,029,282	+				+0.9
3,029,283	-				+0.8
3,029,283	-				+0.1
3,029,323	+				-0.1
3,029,364	+				-1.3
3,029,364	+				+0.1
3,029,423	-				+0.0
3,029,439	+				-0.9
3,029,439	+				-0.5
3,029,439	+				+0.8
3,029,440	-				+0.1
3,029,440	-				+0.3
3,029,440	-				-0.1
3,029,440	-				+1.9
3,029,440	-				-1.5
3,029,440	-				+0.9
3,029,444	-				+0.1
3,029,444	-				-0.5
3,029,444	-				+1.1
3,029,444	-				-0.3
3,029,444	-				+0.5
3,029,471	-				+0.7
3,029,471	-				+1.2
3,029,471	-				-1.3
3,029,471	-				-0.7
3,029,473	+				-0.7
3,029,473	+				-0.1
3,029,474	-				+0.1
3,029,480	-				-1.3
3,029,480	-				+0.5
3,029,480	-				-0.6
3,029,482	-				+0.8
3,029,482	-				-0.8
3,029,482	-				+1.0
3,029,500	-				-0.1
3,029,503	+				-0.1
3,029,504	-				-0.5
3,029,504	-				+0.5
3,029,504	-				+1.5
3,029,529	+				-0.6
3,029,529	+				+0.0
3,029,529	+				+1.1
3,029,529	+				+1.1
3,029,533	-				-1.9
3,029,533	-				+1.2
3,029,562	+		DZA65_RS14115	0.12	+1.5
3,029,629	+		DZA65_RS14115	0.29	+1.1
3,029,679	-		DZA65_RS14115	0.43	+0.1
3,029,679	-		DZA65_RS14115	0.43	-1.1
3,029,687	+		DZA65_RS14115	0.45	-2.6
3,029,687	+		DZA65_RS14115	0.45	-1.8
3,029,688	-		DZA65_RS14115	0.45	+0.8
3,029,688	-		DZA65_RS14115	0.45	+0.4
3,029,688	-		DZA65_RS14115	0.45	-0.1
3,029,688	-		DZA65_RS14115	0.45	+1.0
3,029,688	-				+1.5
3,029,709	+		DZA65_RS14115	0.51	-0.8
3,029,730	+		DZA65_RS14115	0.56	+0.3
3,029,754	+		DZA65_RS14115	0.62	+0.7
3,029,754	+		DZA65_RS14115	0.62	-0.8
3,029,796	+		DZA65_RS14115	0.74	-0.3
3,029,832	+		DZA65_RS14115	0.83	-0.7
3,029,833	-		DZA65_RS14115	0.83	-0.5
3,029,833	-		DZA65_RS14115	0.83	-0.3
3,029,872	+				+0.0
3,029,877	+				-0.8
3,029,878	-				+0.1
3,029,892	-				-2.1
3,029,923	+				-0.1
3,029,923	+				+0.9
3,029,923	+				+0.2
3,029,924	-				-0.5
3,029,924	-				-0.5
3,029,924	-				-2.4
3,029,927	-				-0.3
3,029,944	-				-0.6
3,029,944	-				-0.5
3,029,967	+				+0.5
3,029,967	+				-0.7
3,029,967	+				-1.1
3,029,968	-				-0.7
3,029,968	-				-0.4
3,030,001	-				+0.3
3,030,001	-				-0.9
3,030,001	-				+0.9
3,030,003	-				+0.7
3,030,003	-				+1.7
3,030,003	-				+0.0
3,030,003	-				+0.9
3,030,003	-				-0.8
3,030,005	-				+0.4
3,030,014	-				-1.5
3,030,014	-				-0.5
3,030,184	-				-1.1
3,030,199	-				+0.1
3,030,207	-				-0.9
3,030,207	-				+0.0
3,030,207	-				-1.0