Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14105

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,026,046	+		DZA65_RS14100	0.45	+0.0
3,026,046	+		DZA65_RS14100	0.45	+0.1
3,026,046	+		DZA65_RS14100	0.45	+0.5
3,026,047	-		DZA65_RS14100	0.45	+2.1
3,026,047	-		DZA65_RS14100	0.45	+0.0
3,026,047	-		DZA65_RS14100	0.45	-0.9
3,026,047	-		DZA65_RS14100	0.45	-2.3
3,026,047	-		DZA65_RS14100	0.45	-0.6
3,026,051	+		DZA65_RS14100	0.45	-0.9
3,026,052	-				-0.5
3,026,066	+		DZA65_RS14100	0.46	-2.6
3,026,112	-		DZA65_RS14100	0.49	+0.5
3,026,112	-		DZA65_RS14100	0.49	-0.3
3,026,136	-		DZA65_RS14100	0.50	+0.0
3,026,148	+		DZA65_RS14100	0.51	+0.4
3,026,148	+		DZA65_RS14100	0.51	-0.8
3,026,149	-		DZA65_RS14100	0.51	+1.7
3,026,149	-		DZA65_RS14100	0.51	-0.3
3,026,263	+		DZA65_RS14100	0.57	+0.3
3,026,264	-		DZA65_RS14100	0.57	+0.5
3,026,302	+		DZA65_RS14100	0.60	-0.9
3,026,468	-		DZA65_RS14100	0.69	-1.5
3,026,468	-		DZA65_RS14100	0.69	+0.8
3,026,468	-		DZA65_RS14100	0.69	-0.5
3,026,524	+		DZA65_RS14100	0.72	+0.5
3,026,524	+		DZA65_RS14100	0.72	+0.2
3,026,525	-		DZA65_RS14100	0.73	-0.3
3,026,525	-		DZA65_RS14100	0.73	-0.8
3,026,525	-		DZA65_RS14100	0.73	-1.5
3,026,681	+		DZA65_RS14100	0.82	+0.5
3,026,682	-		DZA65_RS14100	0.82	+0.7
3,026,682	-		DZA65_RS14100	0.82	+0.9
3,026,760	-		DZA65_RS14100	0.86	+1.1
3,026,892	+				-0.6
3,026,892	+				+0.5
3,026,892	+				-0.5
3,026,893	-				+0.5
3,026,981	+				+0.8
3,026,982	-				+0.6
3,027,002	+				+1.7
3,027,002	+				-1.3
3,027,002	+				-0.5
3,027,002	+				-0.5
3,027,002	+				+0.5
3,027,002	+				-0.2
3,027,002	+				+0.9
3,027,002	+				-0.2
3,027,002	+				+0.3
3,027,002	+				-1.5
3,027,003	-				-1.1
3,027,003	-				+0.4
3,027,003	-				-0.5
3,027,003	-				-0.5
3,027,003	-				+1.1
3,027,003	-				-2.6
3,027,003	-				-0.3
3,027,003	-				+3.1
3,027,003	-				-0.7
3,027,003	-				+2.5
3,027,003	-				+0.2
3,027,003	-				-0.5
3,027,003	-				-1.2
3,027,003	-				-1.1
3,027,003	-				-3.1
3,027,085	-		DZA65_RS14105	0.24	+0.5
3,027,087	+		DZA65_RS14105	0.25	+0.4
3,027,087	+		DZA65_RS14105	0.25	-0.5
3,027,087	+		DZA65_RS14105	0.25	+0.5
3,027,087	+		DZA65_RS14105	0.25	-0.9
3,027,088	-		DZA65_RS14105	0.25	-0.5
3,027,088	-		DZA65_RS14105	0.25	+0.0
3,027,140	+		DZA65_RS14105	0.51	-0.5
3,027,141	-		DZA65_RS14105	0.52	-0.7
3,027,141	-		DZA65_RS14105	0.52	-2.6
3,027,193	+		DZA65_RS14105	0.78	+2.1
3,027,194	-		DZA65_RS14105	0.78	-0.9
3,027,211	+		DZA65_RS14105	0.87	-0.2
3,027,229	+				-0.2
3,027,230	-				-0.2
3,027,230	-				+0.5
3,027,230	-				+1.1
3,027,230	-				-0.5
3,027,230	-				-0.2
3,027,230	-				+0.8
3,027,283	+				-1.5
3,027,283	+				-1.5
3,027,283	+				-0.3
3,027,283	+				+0.1
3,027,283	+				+0.4
3,027,283	+				+0.7
3,027,283	+				+0.4
3,027,283	+				+2.3
3,027,284	-				-0.0
3,027,284	-				-1.1
3,027,284	-				-0.5
3,027,284	-				-1.8
3,027,284	-				+1.4
3,027,284	-				-0.9
3,027,284	-				-1.8
3,027,284	-				-0.7
3,027,284	-				-0.1
3,027,376	+				+0.2
3,027,377	-				+1.8
3,027,510	-				+0.5
3,027,510	-				+1.9
3,027,532	+				-1.1
3,027,532	+				+1.2
3,027,532	+				-0.5
3,027,532	+				+1.9
3,027,533	-				+1.9
3,027,533	-				-1.6
3,027,533	-				-1.1
3,027,535	-				-0.5
3,027,575	+				-0.5
3,027,586	+				-1.1
3,027,618	+				-0.2
3,027,621	-				+0.3
3,027,621	-				+1.5
3,027,621	-				+0.2
3,027,621	-				-0.7
3,027,636	+				+0.8
3,027,636	+				-0.1
3,027,643	-				-0.8
3,027,664	+				+0.9
3,027,664	+				-0.3
3,027,665	-				-0.7
3,027,665	-				+1.9
3,027,676	-				-0.2
3,027,677	+				+0.8
3,027,677	+				-2.2
3,027,678	-				-0.5
3,027,678	-				-0.1
3,027,678	-				+0.5
3,027,678	-				-1.1
3,027,717	+				-0.1
3,027,718	-				+0.5
3,027,732	+				-0.8
3,027,733	-				-0.1
3,027,806	+				+0.2
3,027,806	+				-0.1
3,027,814	+				+0.1
3,027,814	+				+0.3
3,027,814	+				+0.1
3,027,815	-				-0.2
3,027,815	-				+1.0
3,027,815	-				+1.3
3,027,818	+				-0.1
3,027,818	+				-0.3
3,027,818	+				-0.2
3,027,818	+				-0.3
3,027,819	-				-0.2
3,027,819	-				-1.1
3,027,819	-				+0.1
3,027,833	+				+2.5
3,027,854	+				-0.8
3,027,855	-				+0.3
3,027,920	+				+0.5
3,027,920	+				-0.3
3,027,921	-				+0.7
3,027,955	+				+0.4
3,027,955	+				-1.8
3,027,955	+				-0.5
3,027,956	-				+0.5
3,027,961	+				-0.7
3,027,961	+				-1.3
3,027,962	-				+0.5
3,027,962	-				-0.1
3,028,059	-		DZA65_RS14110	0.16	-0.9
3,028,124	+		DZA65_RS14110	0.21	+0.3
3,028,124	+		DZA65_RS14110	0.21	+0.2
3,028,125	-		DZA65_RS14110	0.21	+2.3
3,028,125	-		DZA65_RS14110	0.21	+1.4
3,028,125	-		DZA65_RS14110	0.21	+0.3
3,028,125	-		DZA65_RS14110	0.21	+1.1
3,028,130	+		DZA65_RS14110	0.21	-0.6
3,028,160	+		DZA65_RS14110	0.24	-0.3
3,028,160	+		DZA65_RS14110	0.24	-1.1
3,028,161	-		DZA65_RS14110	0.24	-0.5
3,028,161	-		DZA65_RS14110	0.24	-0.4
3,028,161	-		DZA65_RS14110	0.24	-2.5
3,028,161	-		DZA65_RS14110	0.24	+1.9
3,028,161	-		DZA65_RS14110	0.24	-1.1
3,028,161	-		DZA65_RS14110	0.24	-1.7
3,028,161	-		DZA65_RS14110	0.24	-0.3
3,028,161	-		DZA65_RS14110	0.24	-0.5
3,028,168	+		DZA65_RS14110	0.24	+0.1
3,028,169	-		DZA65_RS14110	0.24	-2.0
3,028,169	-		DZA65_RS14110	0.24	-1.3
3,028,169	-		DZA65_RS14110	0.24	-0.3
3,028,169	-		DZA65_RS14110	0.24	+1.2
3,028,172	-		DZA65_RS14110	0.24	-0.3
3,028,172	-		DZA65_RS14110	0.24	-0.7
3,028,172	-		DZA65_RS14110	0.24	-1.1
3,028,178	+		DZA65_RS14110	0.25	-1.6
3,028,178	+		DZA65_RS14110	0.25	-2.3
3,028,178	+		DZA65_RS14110	0.25	+0.3
3,028,179	-		DZA65_RS14110	0.25	-0.9
3,028,179	-		DZA65_RS14110	0.25	-0.2
3,028,179	-		DZA65_RS14110	0.25	-0.3
3,028,179	-		DZA65_RS14110	0.25	-0.6