Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14065

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,015,178	-		DZA65_RS14060	0.69	+0.5
3,015,180	+		DZA65_RS14060	0.70	-0.2
3,015,180	+		DZA65_RS14060	0.70	-0.5
3,015,181	-		DZA65_RS14060	0.70	-1.6
3,015,181	-		DZA65_RS14060	0.70	-2.5
3,015,230	+		DZA65_RS14060	0.75	-1.2
3,015,284	+		DZA65_RS14060	0.82	+0.3
3,015,285	-		DZA65_RS14060	0.82	-0.8
3,015,300	+		DZA65_RS14060	0.83	+0.5
3,015,301	-		DZA65_RS14060	0.84	+0.2
3,015,332	+		DZA65_RS14060	0.87	+0.8
3,015,332	+		DZA65_RS14060	0.87	+0.5
3,015,332	+		DZA65_RS14060	0.87	-0.2
3,015,332	+		DZA65_RS14060	0.87	-0.2
3,015,332	+		DZA65_RS14060	0.87	-2.2
3,015,336	+		DZA65_RS14060	0.88	-0.6
3,015,336	+		DZA65_RS14060	0.88	+1.8
3,015,336	+		DZA65_RS14060	0.88	-0.5
3,015,336	+		DZA65_RS14060	0.88	-0.2
3,015,336	+		DZA65_RS14060	0.88	-0.0
3,015,337	-		DZA65_RS14060	0.88	-1.5
3,015,337	-		DZA65_RS14060	0.88	-0.0
3,015,337	-		DZA65_RS14060	0.88	-0.8
3,015,337	-		DZA65_RS14060	0.88	-0.7
3,015,337	-		DZA65_RS14060	0.88	-0.3
3,015,337	-		DZA65_RS14060	0.88	-1.1
3,015,337	-		DZA65_RS14060	0.88	-0.7
3,015,337	-		DZA65_RS14060	0.88	-1.3
3,015,337	-		DZA65_RS14060	0.88	-1.1
3,015,337	-		DZA65_RS14060	0.88	-2.8
3,015,337	-		DZA65_RS14060	0.88	-0.1
3,015,337	-		DZA65_RS14060	0.88	-0.0
3,015,337	-		DZA65_RS14060	0.88	+0.2
3,015,402	+				-0.1
3,015,402	+				-0.0
3,015,403	-				-0.7
3,015,403	-				+1.0
3,015,408	+				-2.5
3,015,408	+				+0.8
3,015,408	+				-0.9
3,015,409	-				-2.1
3,015,409	-				-0.5
3,015,409	-				+0.7
3,015,466	+				-0.5
3,015,467	-				+0.1
3,015,477	-				-0.8
3,015,502	+				-0.7
3,015,503	-				-2.1
3,015,503	-				-0.3
3,015,504	+				-0.7
3,015,504	+				-0.1
3,015,504	+				-0.2
3,015,505	-				-1.3
3,015,505	-				-2.7
3,015,505	-				+0.5
3,015,505	-				+0.1
3,015,505	-				-1.8
3,015,505	-				+0.4
3,015,505	-				-0.8
3,015,505	-				-1.7
3,015,508	+				+0.5
3,015,508	+				-0.2
3,015,528	-				+0.8
3,015,546	-				-2.5
3,015,573	+				-0.7
3,015,574	-				-1.1
3,015,616	+				-0.2
3,015,641	+				+1.5
3,015,641	+				+0.5
3,015,642	-				+0.8
3,015,703	+				-1.5
3,015,704	-				-1.1
3,015,715	-				-0.5
3,015,770	+				+0.0
3,015,777	-				-1.1
3,015,784	+				+0.6
3,015,784	+				-1.8
3,015,785	-				+0.9
3,015,785	-				-0.1
3,015,785	-				-1.8
3,015,785	-				+0.7
3,015,796	+				+0.8
3,015,797	-				-0.3
3,015,797	-				+0.1
3,015,797	-				+1.9
3,015,800	+				+1.3
3,015,800	+				-0.5
3,015,800	+				+0.7
3,015,801	-				-1.8
3,015,801	-				+0.7
3,015,801	-				-1.5
3,015,803	-				+0.6
3,015,831	-				+0.7
3,015,835	-				+0.5
3,015,914	+				+0.5
3,015,915	-				+0.8
3,015,920	+				-1.5
3,015,948	+				-0.1
3,015,948	+				-1.0
3,015,949	-				-1.5
3,015,968	+				-0.1
3,015,968	+				+4.1
3,015,968	+				-0.6
3,015,969	-				+0.8
3,016,002	+				-0.5
3,016,003	-				+1.5
3,016,003	-				-0.1
3,016,055	+				-1.6
3,016,055	+				-0.1
3,016,101	+				-0.4
3,016,101	+				-0.9
3,016,102	-				+0.5
3,016,102	-				+0.7
3,016,102	-				+0.9
3,016,146	+				-1.1
3,016,146	+				+0.3
3,016,174	+				-0.7
3,016,175	-				+0.8
3,016,224	-				-0.5
3,016,224	-				+2.0
3,016,328	+		DZA65_RS14065	0.11	-2.3
3,016,520	-		DZA65_RS14065	0.22	+0.0
3,016,520	-		DZA65_RS14065	0.22	-0.1
3,016,520	-		DZA65_RS14065	0.22	+0.9
3,016,544	+		DZA65_RS14065	0.23	-1.1
3,016,545	-		DZA65_RS14065	0.24	+0.2
3,016,568	+		DZA65_RS14065	0.25	-0.5
3,016,592	-		DZA65_RS14065	0.26	-0.4
3,016,592	-		DZA65_RS14065	0.26	-0.5
3,016,630	+		DZA65_RS14065	0.29	+0.1
3,016,753	+		DZA65_RS14065	0.36	+0.9
3,016,787	-		DZA65_RS14065	0.38	-0.5
3,016,787	-		DZA65_RS14065	0.38	-0.4
3,016,787	-		DZA65_RS14065	0.38	-0.1
3,016,978	+		DZA65_RS14065	0.49	-0.1
3,016,978	+		DZA65_RS14065	0.49	-1.1
3,017,010	+		DZA65_RS14065	0.51	+0.7
3,017,010	+		DZA65_RS14065	0.51	+0.0
3,017,010	+		DZA65_RS14065	0.51	+1.7
3,017,010	+		DZA65_RS14065	0.51	+0.1
3,017,010	+		DZA65_RS14065	0.51	-0.9
3,017,010	+		DZA65_RS14065	0.51	+0.5
3,017,011	-		DZA65_RS14065	0.51	+0.2
3,017,011	-		DZA65_RS14065	0.51	-1.5
3,017,011	-		DZA65_RS14065	0.51	+1.9
3,017,011	-		DZA65_RS14065	0.51	+1.7
3,017,011	-		DZA65_RS14065	0.51	-1.4
3,017,014	+		DZA65_RS14065	0.51	-1.1
3,017,014	+		DZA65_RS14065	0.51	-1.4
3,017,014	+		DZA65_RS14065	0.51	+0.5
3,017,014	+		DZA65_RS14065	0.51	+0.2
3,017,014	+		DZA65_RS14065	0.51	-1.1
3,017,015	-		DZA65_RS14065	0.51	+0.3
3,017,015	-		DZA65_RS14065	0.51	-2.2
3,017,015	-		DZA65_RS14065	0.51	-0.6
3,017,015	-		DZA65_RS14065	0.51	-1.5
3,017,015	-		DZA65_RS14065	0.51	-1.5
3,017,050	+		DZA65_RS14065	0.53	+0.1
3,017,051	-		DZA65_RS14065	0.53	+0.9
3,017,080	+		DZA65_RS14065	0.55	-0.2
3,017,080	+		DZA65_RS14065	0.55	-1.8
3,017,150	-		DZA65_RS14065	0.59	+0.0
3,017,150	-		DZA65_RS14065	0.59	-0.2
3,017,150	-		DZA65_RS14065	0.59	-0.2
3,017,158	+		DZA65_RS14065	0.60	-1.5
3,017,158	+		DZA65_RS14065	0.60	-0.1
3,017,159	-		DZA65_RS14065	0.60	+0.8
3,017,173	+		DZA65_RS14065	0.60	-2.3
3,017,174	-		DZA65_RS14065	0.60	-0.9
3,017,174	-		DZA65_RS14065	0.60	-1.6
3,017,177	+		DZA65_RS14065	0.61	-0.7
3,017,177	+		DZA65_RS14065	0.61	-0.3
3,017,177	+		DZA65_RS14065	0.61	+0.5
3,017,178	-		DZA65_RS14065	0.61	-0.4
3,017,178	-		DZA65_RS14065	0.61	-1.7
3,017,188	+		DZA65_RS14065	0.61	-1.1
3,017,241	-		DZA65_RS14065	0.64	-0.2
3,017,252	+		DZA65_RS14065	0.65	-1.4
3,017,264	+		DZA65_RS14065	0.66	-0.1
3,017,264	+		DZA65_RS14065	0.66	-0.8
3,017,287	+		DZA65_RS14065	0.67	-0.9
3,017,322	+		DZA65_RS14065	0.69	-0.3
3,017,334	+		DZA65_RS14065	0.70	-0.1
3,017,340	+		DZA65_RS14065	0.70	-0.2
3,017,340	+		DZA65_RS14065	0.70	-0.8
3,017,343	+		DZA65_RS14065	0.70	+0.4
3,017,344	-		DZA65_RS14065	0.70	-1.9
3,017,344	-		DZA65_RS14065	0.70	+1.1
3,017,411	-		DZA65_RS14065	0.74	-1.1
3,017,416	+		DZA65_RS14065	0.75	+0.2
3,017,457	+		DZA65_RS14065	0.77	-0.1
3,017,457	+		DZA65_RS14065	0.77	-0.5
3,017,457	+		DZA65_RS14065	0.77	-1.5
3,017,457	+		DZA65_RS14065	0.77	+0.4
3,017,457	+		DZA65_RS14065	0.77	+1.6
3,017,458	-		DZA65_RS14065	0.77	-0.5
3,017,458	-		DZA65_RS14065	0.77	+0.5
3,017,458	-		DZA65_RS14065	0.77	-0.9
3,017,461	+		DZA65_RS14065	0.77	+0.5
3,017,462	-		DZA65_RS14065	0.77	+0.5
3,017,462	-		DZA65_RS14065	0.77	-0.5
3,017,503	+		DZA65_RS14065	0.80	-0.6
3,017,503	+		DZA65_RS14065	0.80	-2.2
3,017,520	+		DZA65_RS14065	0.81	-0.2
3,017,537	-		DZA65_RS14065	0.82	-0.1
3,017,620	+		DZA65_RS14065	0.87	+0.1
3,017,621	-		DZA65_RS14065	0.87	-0.5
3,017,625	+		DZA65_RS14065	0.87	-1.3
3,017,625	+		DZA65_RS14065	0.87	-0.1
3,017,626	-		DZA65_RS14065	0.87	+0.4
3,017,626	-		DZA65_RS14065	0.87	-2.3
3,017,664	-		DZA65_RS14065	0.89	-0.5
3,017,666	+		DZA65_RS14065	0.89	-1.8
3,017,670	+		DZA65_RS14065	0.90	-1.8
3,017,671	-		DZA65_RS14065	0.90	-0.7
3,017,681	-				-0.6
3,017,731	+				-0.9
3,017,795	+				-1.5
3,017,795	+				+0.2
3,017,849	-				-0.6
3,017,858	+				-0.4
3,017,858	+				-1.3
3,017,859	-				+0.5
3,017,859	-				+0.5
3,017,957	+				+1.9
3,017,957	+				+0.2
3,017,958	-				+0.5
3,017,958	-				-0.2
3,017,981	+				-0.8
3,017,982	-				+0.2
3,017,982	-				+0.5
3,018,013	-				-1.0
3,018,073	+		DZA65_RS14070	0.22	-1.3
3,018,074	-		DZA65_RS14070	0.22	-1.3
3,018,147	+		DZA65_RS14070	0.37	-0.6
3,018,147	+		DZA65_RS14070	0.37	-0.6
3,018,148	-		DZA65_RS14070	0.37	+0.0
3,018,148	-		DZA65_RS14070	0.37	-0.6
3,018,148	-		DZA65_RS14070	0.37	-0.1
3,018,171	+		DZA65_RS14070	0.42	+0.3
3,018,206	+		DZA65_RS14070	0.49	-0.1
3,018,207	-		DZA65_RS14070	0.49	+0.2
3,018,207	-		DZA65_RS14070	0.49	-0.5
3,018,207	-		DZA65_RS14070	0.49	-1.3
3,018,217	+		DZA65_RS14070	0.51	+0.5
3,018,218	-		DZA65_RS14070	0.51	-2.1
3,018,218	-		DZA65_RS14070	0.51	-0.2
3,018,218	-		DZA65_RS14070	0.51	+0.9
3,018,296	+		DZA65_RS14070	0.67	+0.2
3,018,305	+		DZA65_RS14070	0.68	+0.5
3,018,306	-		DZA65_RS14070	0.69	-0.7
3,018,306	-		DZA65_RS14070	0.69	-1.3
3,018,377	-		DZA65_RS14070	0.83	-0.8
3,018,417	+				-1.3
3,018,417	+				-0.2
3,018,417	+				-0.6
3,018,418	-				+0.5
3,018,418	-				+0.2
3,018,479	+				-0.4
3,018,479	+				-0.6
3,018,479	+				+0.4
3,018,479	+				-0.0
3,018,479	+				-2.5
3,018,480	-				+0.2
3,018,480	-				+0.1
3,018,480	-				-0.2
3,018,480	-				-0.8
3,018,480	-				+0.5
3,018,480	-				+0.3
3,018,480	-				+0.3
3,018,481	+				+0.3
3,018,481	+				+0.5
3,018,481	+				+0.1
3,018,481	+				-0.2
3,018,487	+				-0.3
3,018,487	+				-0.1
3,018,487	+				-0.5
3,018,487	+				+1.8
3,018,487	+				-2.2
3,018,487	+				-1.1
3,018,487	+				+0.3
3,018,488	-				+0.5
3,018,498	+				-0.3
3,018,498	+				+2.2
3,018,499	-				-0.1
3,018,557	+				-1.2
3,018,558	-				+1.7
3,018,558	-				-0.5
3,018,558	-				-0.3
3,018,558	-				-2.3
3,018,575	-				-1.1
3,018,590	-				-0.6
3,018,590	-				-2.3
3,018,590	-				-0.3
3,018,621	+				+0.2
3,018,768	+		DZA65_RS14075	0.13	-1.1
3,018,769	-				-0.5
3,018,789	+		DZA65_RS14075	0.14	-1.1
3,018,789	+		DZA65_RS14075	0.14	-0.3
3,018,790	-		DZA65_RS14075	0.14	+0.4
3,018,790	-		DZA65_RS14075	0.14	-0.2
3,018,835	-		DZA65_RS14075	0.17	-1.1
3,018,835	-		DZA65_RS14075	0.17	-1.1