Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13765

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,952,865	-				-1.3
2,952,868	-				+0.0
2,952,880	-				-0.9
2,952,880	-				+0.7
2,952,919	+				+1.3
2,952,919	+				-2.1
2,952,919	+				+0.1
2,952,919	+				+0.8
2,952,919	+				-1.5
2,952,920	-				+1.5
2,952,920	-				-0.3
2,952,931	+				-0.9
2,952,950	+				-0.1
2,952,950	+				-1.4
2,952,951	-				+1.1
2,953,010	+				-0.2
2,953,011	-				+0.1
2,953,062	+				-0.2
2,953,092	+				-1.1
2,953,092	+				-1.1
2,953,093	-				-0.4
2,953,093	-				+0.1
2,953,105	-				-1.1
2,953,166	+				+0.5
2,953,166	+				-1.0
2,953,182	+				-0.7
2,953,183	-				+1.6
2,953,183	-				+0.8
2,953,194	+				-0.5
2,953,194	+				+0.4
2,953,195	-				+0.9
2,953,220	+				-0.1
2,953,220	+				-1.8
2,953,220	+				-0.3
2,953,221	-				-1.8
2,953,221	-				+0.0
2,953,221	-				-1.5
2,953,221	-				-1.1
2,953,221	-				+1.2
2,953,222	+				-0.4
2,953,222	+				-1.0
2,953,223	-				+0.2
2,953,223	-				+0.8
2,953,223	-				+0.3
2,953,223	-				-0.6
2,953,474	-		DZA65_RS13760	0.55	-1.2
2,953,485	-		DZA65_RS13760	0.57	-1.1
2,953,485	-		DZA65_RS13760	0.57	+0.3
2,953,529	-		DZA65_RS13760	0.67	-0.2
2,953,529	-		DZA65_RS13760	0.67	-0.5
2,953,547	+		DZA65_RS13760	0.71	+0.3
2,953,548	-		DZA65_RS13760	0.72	+0.3
2,953,575	+		DZA65_RS13760	0.78	-1.4
2,953,576	-		DZA65_RS13760	0.78	+0.8
2,953,725	+				+0.0
2,953,725	+				-0.2
2,953,822	-				+0.2
2,953,839	+				-0.2
2,953,840	-				-1.5
2,953,840	-				-0.5
2,953,916	-				-1.1
2,953,916	-				-0.2
2,953,982	-				-0.6
2,953,984	-				+2.0
2,953,992	-		DZA65_RS13765	0.10	-0.0
2,954,038	+		DZA65_RS13765	0.13	-1.5
2,954,038	+		DZA65_RS13765	0.13	+0.1
2,954,038	+		DZA65_RS13765	0.13	-1.5
2,954,038	+		DZA65_RS13765	0.13	-1.5
2,954,038	+		DZA65_RS13765	0.13	-1.1
2,954,038	+		DZA65_RS13765	0.13	+1.3
2,954,038	+		DZA65_RS13765	0.13	+2.8
2,954,038	+		DZA65_RS13765	0.13	+0.4
2,954,038	+		DZA65_RS13765	0.13	-1.1
2,954,038	+		DZA65_RS13765	0.13	+0.2
2,954,039	-		DZA65_RS13765	0.13	-1.1
2,954,039	-		DZA65_RS13765	0.13	-1.3
2,954,071	+				+0.5
2,954,071	+		DZA65_RS13765	0.15	+0.3
2,954,071	+		DZA65_RS13765	0.15	-0.3
2,954,071	+		DZA65_RS13765	0.15	-0.9
2,954,072	-		DZA65_RS13765	0.15	-0.4
2,954,072	-		DZA65_RS13765	0.15	-0.5
2,954,357	-		DZA65_RS13765	0.34	-1.2
2,954,367	+		DZA65_RS13765	0.35	+1.1
2,954,375	+		DZA65_RS13765	0.35	-0.4
2,954,423	+		DZA65_RS13765	0.38	-0.6
2,954,438	+		DZA65_RS13765	0.39	-3.3
2,954,449	+		DZA65_RS13765	0.40	+0.5
2,954,449	+		DZA65_RS13765	0.40	+1.2
2,954,449	+		DZA65_RS13765	0.40	-1.1
2,954,449	+		DZA65_RS13765	0.40	+0.2
2,954,449	+		DZA65_RS13765	0.40	+0.2
2,954,449	+		DZA65_RS13765	0.40	+2.7
2,954,449	+		DZA65_RS13765	0.40	+0.1
2,954,449	+		DZA65_RS13765	0.40	-0.5
2,954,450	-		DZA65_RS13765	0.40	-0.5
2,954,450	-		DZA65_RS13765	0.40	-1.1
2,954,450	-		DZA65_RS13765	0.40	-0.6
2,954,450	-		DZA65_RS13765	0.40	-0.7
2,954,450	-		DZA65_RS13765	0.40	-0.1
2,954,450	-		DZA65_RS13765	0.40	+0.1
2,954,451	+		DZA65_RS13765	0.40	-2.1
2,954,451	+		DZA65_RS13765	0.40	+1.0
2,954,452	-		DZA65_RS13765	0.40	-1.1
2,954,486	+		DZA65_RS13765	0.43	-0.1
2,954,565	-		DZA65_RS13765	0.48	-0.8
2,954,585	+				+2.1
2,954,585	+		DZA65_RS13765	0.49	-1.3
2,954,585	+		DZA65_RS13765	0.49	-0.7
2,954,585	+		DZA65_RS13765	0.49	+1.1
2,954,586	-		DZA65_RS13765	0.49	-0.5
2,954,695	-		DZA65_RS13765	0.56	-0.3
2,954,725	-		DZA65_RS13765	0.58	-2.1
2,954,725	-		DZA65_RS13765	0.58	-1.3
2,954,738	+		DZA65_RS13765	0.59	-0.4
2,954,738	+		DZA65_RS13765	0.59	+0.8
2,954,738	+		DZA65_RS13765	0.59	-1.7
2,954,738	+		DZA65_RS13765	0.59	-1.5
2,954,738	+		DZA65_RS13765	0.59	+0.5
2,954,738	+		DZA65_RS13765	0.59	-2.0
2,954,738	+		DZA65_RS13765	0.59	-0.7
2,954,738	+		DZA65_RS13765	0.59	-0.3
2,954,739	-		DZA65_RS13765	0.59	+0.5
2,954,739	-		DZA65_RS13765	0.59	-0.8
2,954,739	-		DZA65_RS13765	0.59	-1.2
2,954,739	-		DZA65_RS13765	0.59	+0.5
2,954,739	-		DZA65_RS13765	0.59	-0.8
2,954,834	+		DZA65_RS13765	0.65	+1.1
2,954,835	-		DZA65_RS13765	0.66	-0.5
2,954,835	-		DZA65_RS13765	0.66	-2.5
2,955,000	+		DZA65_RS13765	0.76	-0.4
2,955,001	-		DZA65_RS13765	0.76	+0.2
2,955,065	+		DZA65_RS13765	0.81	-0.5
2,955,081	+		DZA65_RS13765	0.82	+1.0
2,955,081	+		DZA65_RS13765	0.82	-1.5
2,955,081	+				+1.1
2,955,081	+		DZA65_RS13765	0.82	+0.1
2,955,082	-		DZA65_RS13765	0.82	-0.0
2,955,082	-		DZA65_RS13765	0.82	-1.0
2,955,082	-		DZA65_RS13765	0.82	-1.5
2,955,082	-		DZA65_RS13765	0.82	-2.1
2,955,082	-		DZA65_RS13765	0.82	-0.6
2,955,183	+		DZA65_RS13765	0.88	-0.5
2,955,184	-		DZA65_RS13765	0.89	-1.8
2,955,315	-				-2.3
2,955,355	+				+0.1
2,955,355	+				+2.5
2,955,356	-				+0.3
2,955,394	+				-1.4
2,955,394	+				+0.1
2,955,394	+				+2.6
2,955,394	+				-0.4
2,955,395	-				+0.3
2,955,395	-				+0.0
2,955,395	-				+0.5
2,955,395	-				-1.1
2,955,406	+				+0.2
2,955,406	+				+0.7
2,955,406	+				-0.0
2,955,406	+				-2.1
2,955,406	+				-0.2
2,955,406	+				-0.2
2,955,406	+				-0.2
2,955,407	-				+1.4
2,955,407	-				-1.8
2,955,407	-				-0.5
2,955,407	-				-0.3
2,955,407	-				-0.2
2,955,407	-				+0.6
2,955,451	+				-0.8
2,955,451	+				-1.7
2,955,534	+				-1.5
2,955,534	+				-0.1
2,955,535	-				-0.2
2,955,626	+				+0.2
2,955,627	-				+0.2
2,955,738	-		DZA65_RS13770	0.14	-1.8
2,955,761	+		DZA65_RS13770	0.15	+0.5
2,955,761	+		DZA65_RS13770	0.15	+0.1
2,955,816	+		DZA65_RS13770	0.19	-0.3
2,955,816	+				+1.5
2,955,839	+		DZA65_RS13770	0.20	-0.7
2,955,839	+		DZA65_RS13770	0.20	-2.7
2,955,840	-		DZA65_RS13770	0.20	+1.0
2,955,840	-		DZA65_RS13770	0.20	-0.9
2,955,870	-		DZA65_RS13770	0.22	+0.5
2,955,914	+		DZA65_RS13770	0.25	-0.1
2,955,915	-		DZA65_RS13770	0.25	-1.0
2,955,954	-		DZA65_RS13770	0.27	-0.2
2,956,052	+		DZA65_RS13770	0.33	+0.1
2,956,052	+		DZA65_RS13770	0.33	-0.5
2,956,070	+		DZA65_RS13770	0.34	-0.7
2,956,214	+		DZA65_RS13770	0.43	-0.5
2,956,226	+				-1.5