Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,890,105	+		DZA65_RS13465	0.59	+1.8
2,890,105	+		DZA65_RS13465	0.59	-1.3
2,890,106	-		DZA65_RS13465	0.59	+0.3
2,890,106	-		DZA65_RS13465	0.59	-0.7
2,890,326	+		DZA65_RS13465	0.72	+0.9
2,890,326	+		DZA65_RS13465	0.72	-0.3
2,890,327	-		DZA65_RS13465	0.72	+0.7
2,890,327	-		DZA65_RS13465	0.72	-2.0
2,890,327	-		DZA65_RS13465	0.72	-0.2
2,890,327	-		DZA65_RS13465	0.72	+2.7
2,890,328	+		DZA65_RS13465	0.72	+0.6
2,890,328	+		DZA65_RS13465	0.72	-0.1
2,890,328	+		DZA65_RS13465	0.72	-0.9
2,890,328	+		DZA65_RS13465	0.72	-0.4
2,890,328	+		DZA65_RS13465	0.72	-0.5
2,890,328	+		DZA65_RS13465	0.72	-0.5
2,890,329	-		DZA65_RS13465	0.72	-0.4
2,890,329	-		DZA65_RS13465	0.72	-1.5
2,890,344	-		DZA65_RS13465	0.73	-0.9
2,890,344	-		DZA65_RS13465	0.73	+1.5
2,890,344	-		DZA65_RS13465	0.73	-1.1
2,890,391	+		DZA65_RS13465	0.76	-0.5
2,890,391	+		DZA65_RS13465	0.76	-0.5
2,890,391	+		DZA65_RS13465	0.76	+0.3
2,890,392	-		DZA65_RS13465	0.76	-0.7
2,890,392	-		DZA65_RS13465	0.76	+0.3
2,890,439	-		DZA65_RS13465	0.79	+0.9
2,890,461	+		DZA65_RS13465	0.80	-2.0
2,890,596	+		DZA65_RS13465	0.88	+1.4
2,890,601	+		DZA65_RS13465	0.89	+0.9
2,890,601	+		DZA65_RS13465	0.89	-0.5
2,890,601	+		DZA65_RS13465	0.89	+1.5
2,890,601	+		DZA65_RS13465	0.89	-0.0
2,890,601	+		DZA65_RS13465	0.89	-0.5
2,890,602	-		DZA65_RS13465	0.89	-0.9
2,890,602	-		DZA65_RS13465	0.89	-1.1
2,890,602	-		DZA65_RS13465	0.89	-0.5
2,890,773	+				+0.5
2,890,786	+				-1.0
2,890,809	+				-0.3
2,890,809	+				+0.5
2,890,809	+				+0.5
2,890,809	+				+1.0
2,890,809	+				-0.3
2,890,810	-				-2.3
2,890,810	-				-1.8
2,890,814	-				-2.3
2,890,830	+				+0.2
2,890,874	+				-1.5
2,890,874	+				+3.0
2,890,875	-				-1.0
2,890,890	+				+0.5
2,890,890	+				+0.9
2,890,890	+				-1.2
2,890,892	+				+0.2
2,890,892	+				-0.2
2,890,893	-				-3.0
2,890,893	-				+0.5
2,890,927	+				-0.9
2,890,927	+				+0.3
2,890,928	-				-0.1
2,890,928	-				-0.2
2,890,928	-				-0.8
2,890,928	-				-0.2
2,890,928	-				+0.8
2,890,928	-				+0.5
2,890,928	-				-0.5
2,890,928	-				+1.4
2,890,979	+				-0.2
2,890,979	+				-0.0
2,890,980	-				+0.5
2,890,980	-				-2.3
2,890,984	+				+1.2
2,890,984	+				-0.8
2,890,984	+				+2.1
2,890,985	-				-1.5
2,890,985	-				-0.9
2,891,015	-				-0.2
2,891,015	-				-0.3
2,891,034	+				-2.3
2,891,049	+				-1.8
2,891,049	+				-1.5
2,891,049	+				+1.6
2,891,049	+				-0.9
2,891,050	-				-0.6
2,891,050	-				-1.1
2,891,050	-				+0.3
2,891,050	-				-0.5
2,891,050	-				-0.1
2,891,050	-				-0.7
2,891,050	-				-0.6
2,891,050	-				-1.0
2,891,050	-				-0.3
2,891,059	+				+0.1
2,891,059	+				-2.3
2,891,060	-				+0.1
2,891,064	+				+0.3
2,891,065	-				-0.6
2,891,186	+				-0.4
2,891,186	+				-0.1
2,891,187	-				+0.7
2,891,197	+				-0.1
2,891,197	+				+0.1
2,891,197	+				+0.1
2,891,197	+				+0.5
2,891,270	+		DZA65_RS13470	0.11	+0.1
2,891,271	-		DZA65_RS13470	0.12	-0.6
2,891,271	-		DZA65_RS13470	0.12	-2.0
2,891,274	+		DZA65_RS13470	0.12	+2.1
2,891,274	+		DZA65_RS13470	0.12	+0.5
2,891,274	+		DZA65_RS13470	0.12	-0.6
2,891,274	+		DZA65_RS13470	0.12	-0.0
2,891,275	-		DZA65_RS13470	0.12	-0.8
2,891,275	-		DZA65_RS13470	0.12	-1.3
2,891,275	-		DZA65_RS13470	0.12	+0.2
2,891,285	+		DZA65_RS13470	0.12	+0.6
2,891,285	+		DZA65_RS13470	0.12	-0.8
2,891,285	+		DZA65_RS13470	0.12	-1.5
2,891,286	-				-1.8
2,891,286	-		DZA65_RS13470	0.13	-0.5
2,891,398	-		DZA65_RS13470	0.20	-1.2
2,891,410	+		DZA65_RS13470	0.21	-2.5
2,891,410	+		DZA65_RS13470	0.21	-1.1
2,891,411	-		DZA65_RS13470	0.21	+0.8
2,891,411	-		DZA65_RS13470	0.21	-0.2
2,891,466	+		DZA65_RS13470	0.25	-0.3
2,891,466	+		DZA65_RS13470	0.25	+0.5
2,891,466	+		DZA65_RS13470	0.25	-1.1
2,891,467	-		DZA65_RS13470	0.25	+0.2
2,891,467	-		DZA65_RS13470	0.25	-1.5
2,891,467	-		DZA65_RS13470	0.25	-0.0
2,891,467	-		DZA65_RS13470	0.25	+0.9
2,891,467	-		DZA65_RS13470	0.25	-1.5
2,891,467	-		DZA65_RS13470	0.25	+1.2
2,891,468	+		DZA65_RS13470	0.25	+0.2
2,891,469	-		DZA65_RS13470	0.25	-0.7
2,891,469	-		DZA65_RS13470	0.25	-0.8
2,891,469	-		DZA65_RS13470	0.25	-0.3
2,891,469	-		DZA65_RS13470	0.25	+0.1
2,891,469	-		DZA65_RS13470	0.25	-0.5
2,891,521	-		DZA65_RS13470	0.29	-0.0
2,891,705	+		DZA65_RS13470	0.41	+0.9
2,891,706	-		DZA65_RS13470	0.41	-0.9
2,891,706	-		DZA65_RS13470	0.41	-2.8
2,891,730	+		DZA65_RS13470	0.43	+0.1
2,891,730	+		DZA65_RS13470	0.43	+1.2
2,891,738	+		DZA65_RS13470	0.44	+0.5
2,891,738	+		DZA65_RS13470	0.44	+0.7
2,891,739	-		DZA65_RS13470	0.44	-1.8
2,891,739	-		DZA65_RS13470	0.44	-0.1
2,891,750	+		DZA65_RS13470	0.44	-0.5
2,891,751	-		DZA65_RS13470	0.45	-0.2
2,891,760	+		DZA65_RS13470	0.45	+0.5
2,891,761	-		DZA65_RS13470	0.45	+0.0
2,891,805	+		DZA65_RS13470	0.48	-0.2
2,891,805	+		DZA65_RS13470	0.48	-0.1
2,891,805	+		DZA65_RS13470	0.48	+1.5
2,891,805	+		DZA65_RS13470	0.48	+0.5
2,891,805	+		DZA65_RS13470	0.48	-0.8
2,891,805	+		DZA65_RS13470	0.48	-0.2
2,891,805	+				+2.5
2,891,806	-				-1.1
2,891,806	-		DZA65_RS13470	0.48	-1.1
2,891,806	-		DZA65_RS13470	0.48	+1.1
2,891,806	-		DZA65_RS13470	0.48	+0.4
2,891,806	-		DZA65_RS13470	0.48	-0.2
2,891,806	-		DZA65_RS13470	0.48	+0.3
2,891,806	-		DZA65_RS13470	0.48	+0.5
2,891,806	-		DZA65_RS13470	0.48	+0.5
2,891,806	-		DZA65_RS13470	0.48	-0.5
2,891,806	-		DZA65_RS13470	0.48	-0.1
2,891,806	-		DZA65_RS13470	0.48	+0.1
2,891,806	-		DZA65_RS13470	0.48	+0.5
2,891,806	-		DZA65_RS13470	0.48	+0.9
2,891,806	-		DZA65_RS13470	0.48	-0.2
2,891,806	-		DZA65_RS13470	0.48	+0.0
2,891,806	-		DZA65_RS13470	0.48	-0.5
2,891,806	-		DZA65_RS13470	0.48	-0.4
2,891,814	+		DZA65_RS13470	0.49	+0.1
2,891,900	+		DZA65_RS13470	0.55	-0.7
2,891,900	+		DZA65_RS13470	0.55	-0.0
2,891,900	+		DZA65_RS13470	0.55	-1.5
2,891,900	+		DZA65_RS13470	0.55	+0.7
2,891,901	-		DZA65_RS13470	0.55	-0.3
2,891,901	-		DZA65_RS13470	0.55	+0.2
2,891,901	-		DZA65_RS13470	0.55	-0.4
2,891,901	-		DZA65_RS13470	0.55	+0.9
2,891,901	-		DZA65_RS13470	0.55	-1.4
2,891,901	-		DZA65_RS13470	0.55	-0.7
2,891,901	-		DZA65_RS13470	0.55	-0.7
2,891,901	-		DZA65_RS13470	0.55	-0.9
2,891,901	-		DZA65_RS13470	0.55	-0.3
2,891,901	-		DZA65_RS13470	0.55	-0.8
2,891,903	+		DZA65_RS13470	0.55	+0.2
2,891,904	-		DZA65_RS13470	0.55	-0.1
2,891,939	+		DZA65_RS13470	0.58	-0.6
2,891,940	-		DZA65_RS13470	0.58	+0.1
2,891,940	-		DZA65_RS13470	0.58	-0.2
2,891,940	-		DZA65_RS13470	0.58	-0.5
2,891,940	-		DZA65_RS13470	0.58	-0.3
2,891,951	+		DZA65_RS13470	0.58	-0.0
2,891,951	+		DZA65_RS13470	0.58	-0.1
2,891,951	+		DZA65_RS13470	0.58	-0.7
2,891,952	-		DZA65_RS13470	0.58	-0.6
2,891,952	-		DZA65_RS13470	0.58	-0.1
2,891,952	-		DZA65_RS13470	0.58	+0.2
2,891,993	+		DZA65_RS13470	0.61	-1.5
2,892,043	+		DZA65_RS13470	0.65	+0.5
2,892,117	+		DZA65_RS13470	0.70	-2.3
2,892,117	+		DZA65_RS13470	0.70	-0.1
2,892,118	-		DZA65_RS13470	0.70	-0.2
2,892,136	+		DZA65_RS13470	0.71	+1.0
2,892,136	+		DZA65_RS13470	0.71	+0.8
2,892,136	+		DZA65_RS13470	0.71	+0.7
2,892,136	+		DZA65_RS13470	0.71	+0.5
2,892,137	-		DZA65_RS13470	0.71	-0.1
2,892,137	-		DZA65_RS13470	0.71	-0.0
2,892,137	-		DZA65_RS13470	0.71	+1.5
2,892,335	+		DZA65_RS13470	0.85	-2.0
2,892,335	+		DZA65_RS13470	0.85	+1.1
2,892,335	+		DZA65_RS13470	0.85	-0.0
2,892,335	+		DZA65_RS13470	0.85	+1.5
2,892,335	+		DZA65_RS13470	0.85	+1.1
2,892,335	+		DZA65_RS13470	0.85	-0.1
2,892,335	+		DZA65_RS13470	0.85	-1.2
2,892,335	+		DZA65_RS13470	0.85	+0.6
2,892,335	+		DZA65_RS13470	0.85	-1.1
2,892,336	-		DZA65_RS13470	0.85	-0.8
2,892,336	-		DZA65_RS13470	0.85	+0.5
2,892,336	-		DZA65_RS13470	0.85	+0.6
2,892,336	-		DZA65_RS13470	0.85	+0.2
2,892,336	-		DZA65_RS13470	0.85	-0.7
2,892,336	-		DZA65_RS13470	0.85	+0.2
2,892,336	-		DZA65_RS13470	0.85	-0.8
2,892,337	+		DZA65_RS13470	0.85	+0.1
2,892,337	+		DZA65_RS13470	0.85	-0.2
2,892,337	+		DZA65_RS13470	0.85	+1.7
2,892,338	-		DZA65_RS13470	0.85	+1.1
2,892,338	-		DZA65_RS13470	0.85	-2.5
2,892,338	-		DZA65_RS13470	0.85	+0.3
2,892,455	+				+2.1
2,892,456	-				-0.4
2,892,456	-				+0.7
2,892,500	+				+0.3
2,892,500	+				+1.7
2,892,501	-				-1.3
2,892,501	-				-0.2
2,892,501	-				-1.5
2,892,501	-				+0.1
2,892,524	+				-2.0
2,892,525	-				-0.4
2,892,532	-				+0.5
2,892,532	-				-0.3
2,892,535	-				+0.5
2,892,555	+				-0.1
2,892,555	+				+0.9
2,892,555	+				-0.2
2,892,556	-				+0.1
2,892,556	-				-0.3
2,892,556	-				-0.4
2,892,556	-				-0.5
2,892,579	+				+0.2
2,892,579	+				+0.2
2,892,579	+				-0.9
2,892,580	-				-0.5
2,892,580	-				-0.7
2,892,614	-				+1.5
2,892,614	-				+0.1
2,892,621	+				-0.1
2,892,622	-				+0.9
2,892,625	-				+1.1
2,892,658	+				-2.3
2,892,658	+				+1.1
2,892,658	+				-0.7
2,892,658	+				+1.0
2,892,658	+				-0.5
2,892,658	+				-0.9
2,892,658	+				-0.5
2,892,658	+				+0.1
2,892,659	-				-0.5
2,892,659	-				+0.6
2,892,659	-				+0.2
2,892,659	-				-0.7
2,892,659	-				+0.8
2,892,659	-				+0.7
2,892,667	+				-0.8
2,892,668	-				-0.0
2,892,773	+				-2.1
2,892,774	-				+2.3
2,892,774	-				+1.6
2,892,827	+		DZA65_RS13475	0.16	-0.5
2,892,830	-		DZA65_RS13475	0.16	-0.4
2,892,830	-		DZA65_RS13475	0.16	-0.3
2,892,832	+		DZA65_RS13475	0.17	+0.5
2,892,833	-		DZA65_RS13475	0.17	-0.4
2,892,833	-		DZA65_RS13475	0.17	-1.4
2,892,904	+		DZA65_RS13475	0.26	-1.1
2,892,904	+		DZA65_RS13475	0.26	+0.6
2,892,930	-		DZA65_RS13475	0.30	-0.3
2,892,934	+		DZA65_RS13475	0.30	+0.1
2,892,934	+		DZA65_RS13475	0.30	-0.0
2,892,935	-		DZA65_RS13475	0.31	-0.5
2,892,992	+		DZA65_RS13475	0.38	-0.3
2,892,993	-		DZA65_RS13475	0.39	+1.0
2,893,051	+		DZA65_RS13475	0.46	-1.8
2,893,051	+		DZA65_RS13475	0.46	-2.3
2,893,052	-		DZA65_RS13475	0.47	+0.8
2,893,067	-		DZA65_RS13475	0.49	-0.7
2,893,180	+		DZA65_RS13475	0.64	+0.5
2,893,180	+		DZA65_RS13475	0.64	-1.6
2,893,181	-		DZA65_RS13475	0.64	-0.7
2,893,181	-		DZA65_RS13475	0.64	+1.5
2,893,181	-		DZA65_RS13475	0.64	+1.5
2,893,219	+		DZA65_RS13475	0.69	+0.8
2,893,234	+		DZA65_RS13475	0.71	+0.5
2,893,235	-		DZA65_RS13475	0.71	+0.2
2,893,389	+				-0.5
2,893,390	-				+0.3
2,893,390	-				+1.4
2,893,407	+				-1.1
2,893,408	-				-0.1
2,893,419	+				-1.2
2,893,419	+				+0.3
2,893,419	+				-0.2
2,893,419	+				-2.3
2,893,420	-				+0.5
2,893,439	-				-0.5
2,893,444	+				+0.2
2,893,445	-				+1.2
2,893,450	+				+0.9
2,893,450	+				-1.2
2,893,453	-				+0.3
2,893,453	-				+0.3
2,893,453	-				+0.3
2,893,462	-				+0.1
2,893,500	+				-0.1
2,893,518	-				+2.1
2,893,544	+				+0.1
2,893,554	+				-0.0