Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13445

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,884,243	+		DZA65_RS13440	0.35	+0.9
2,884,249	+		DZA65_RS13440	0.35	-0.5
2,884,249	+		DZA65_RS13440	0.35	-1.2
2,884,249	+		DZA65_RS13440	0.35	-2.5
2,884,256	+		DZA65_RS13440	0.36	-1.5
2,884,271	+		DZA65_RS13440	0.37	-1.5
2,884,271	+		DZA65_RS13440	0.37	-0.4
2,884,271	+		DZA65_RS13440	0.37	-0.3
2,884,271	+		DZA65_RS13440	0.37	-0.9
2,884,271	+		DZA65_RS13440	0.37	-0.7
2,884,271	+		DZA65_RS13440	0.37	+1.8
2,884,272	-		DZA65_RS13440	0.37	-0.7
2,884,272	-		DZA65_RS13440	0.37	+2.1
2,884,272	-		DZA65_RS13440	0.37	-0.0
2,884,272	-		DZA65_RS13440	0.37	-0.2
2,884,272	-		DZA65_RS13440	0.37	+0.7
2,884,272	-		DZA65_RS13440	0.37	-0.3
2,884,273	+		DZA65_RS13440	0.37	+0.1
2,884,273	+		DZA65_RS13440	0.37	+0.7
2,884,274	-		DZA65_RS13440	0.37	-0.5
2,884,310	+		DZA65_RS13440	0.41	-0.4
2,884,310	+		DZA65_RS13440	0.41	-0.3
2,884,310	+		DZA65_RS13440	0.41	-0.8
2,884,310	+		DZA65_RS13440	0.41	-0.6
2,884,311	-		DZA65_RS13440	0.41	+0.6
2,884,311	-		DZA65_RS13440	0.41	-0.2
2,884,311	-		DZA65_RS13440	0.41	-0.4
2,884,311	-		DZA65_RS13440	0.41	+0.5
2,884,311	-		DZA65_RS13440	0.41	+0.6
2,884,311	-		DZA65_RS13440	0.41	-0.6
2,884,311	-		DZA65_RS13440	0.41	-0.2
2,884,311	-		DZA65_RS13440	0.41	-0.1
2,884,353	-		DZA65_RS13440	0.45	+0.4
2,884,358	-		DZA65_RS13440	0.45	-0.2
2,884,406	+		DZA65_RS13440	0.50	+0.1
2,884,478	+		DZA65_RS13440	0.56	-0.1
2,884,478	+		DZA65_RS13440	0.56	-0.7
2,884,479	-		DZA65_RS13440	0.56	+0.4
2,884,514	+		DZA65_RS13440	0.60	-1.7
2,884,514	+		DZA65_RS13440	0.60	-0.1
2,884,514	+		DZA65_RS13440	0.60	-0.4
2,884,515	-		DZA65_RS13440	0.60	+0.6
2,884,613	+		DZA65_RS13440	0.69	+3.1
2,884,613	+		DZA65_RS13440	0.69	+0.3
2,884,613	+		DZA65_RS13440	0.69	+0.2
2,884,613	+		DZA65_RS13440	0.69	-0.1
2,884,613	+		DZA65_RS13440	0.69	+1.3
2,884,614	-		DZA65_RS13440	0.69	-1.5
2,884,614	-		DZA65_RS13440	0.69	+0.5
2,884,614	-		DZA65_RS13440	0.69	-1.1
2,884,628	+		DZA65_RS13440	0.70	-0.1
2,884,629	-		DZA65_RS13440	0.70	-0.3
2,884,637	+		DZA65_RS13440	0.71	-0.2
2,884,638	-		DZA65_RS13440	0.71	+1.0
2,884,643	-		DZA65_RS13440	0.71	+0.1
2,884,652	+		DZA65_RS13440	0.72	-0.4
2,884,652	+		DZA65_RS13440	0.72	+0.7
2,884,663	+		DZA65_RS13440	0.73	-0.0
2,884,663	+		DZA65_RS13440	0.73	-0.7
2,884,663	+		DZA65_RS13440	0.73	+0.1
2,884,664	-		DZA65_RS13440	0.73	+2.5
2,884,664	-		DZA65_RS13440	0.73	+0.6
2,884,664	-		DZA65_RS13440	0.73	-1.2
2,884,664	-		DZA65_RS13440	0.73	-1.2
2,884,695	+		DZA65_RS13440	0.76	+0.2
2,884,751	+		DZA65_RS13440	0.81	-0.6
2,884,751	+		DZA65_RS13440	0.81	-0.1
2,884,751	+		DZA65_RS13440	0.81	+0.2
2,884,751	+		DZA65_RS13440	0.81	-1.1
2,884,752	-		DZA65_RS13440	0.81	+0.1
2,884,752	-		DZA65_RS13440	0.81	-0.0
2,884,796	+		DZA65_RS13440	0.85	-1.8
2,884,804	+		DZA65_RS13440	0.86	-0.5
2,884,804	+		DZA65_RS13440	0.86	+1.0
2,884,805	-		DZA65_RS13440	0.86	-1.1
2,884,805	-		DZA65_RS13440	0.86	-1.1
2,884,808	+		DZA65_RS13440	0.87	+2.9
2,884,808	+		DZA65_RS13440	0.87	-0.1
2,884,808	+		DZA65_RS13440	0.87	+0.0
2,884,808	+		DZA65_RS13440	0.87	-1.3
2,884,809	-		DZA65_RS13440	0.87	+0.1
2,884,809	-		DZA65_RS13440	0.87	-0.5
2,884,809	-		DZA65_RS13440	0.87	+0.5
2,884,809	-		DZA65_RS13440	0.87	-2.1
2,884,829	+		DZA65_RS13440	0.88	+0.5
2,884,829	+		DZA65_RS13440	0.88	-0.8
2,884,829	+		DZA65_RS13440	0.88	+0.6
2,884,829	+		DZA65_RS13440	0.88	-0.0
2,884,829	+		DZA65_RS13440	0.88	+0.0
2,884,829	+		DZA65_RS13440	0.88	+0.5
2,884,830	-		DZA65_RS13440	0.89	-0.5
2,884,840	+		DZA65_RS13440	0.89	+0.5
2,884,860	+				-0.7
2,884,860	+				+0.2
2,884,860	+				+1.1
2,884,860	+				+1.2
2,884,861	-				-1.5
2,884,861	-				-0.5
2,884,861	-				+1.2
2,884,861	-				-0.3
2,884,861	-				-1.1
2,884,865	+				-0.6
2,884,866	-				-1.4
2,884,866	-				-1.3
2,884,901	+				+0.7
2,884,902	-				-1.8
2,884,902	-				+0.6
2,884,902	-				-0.5
2,884,902	-				-0.1
2,884,943	+				+0.6
2,884,943	+				-0.3
2,884,968	-				+1.5
2,884,973	+				-0.7
2,884,973	+				-0.2
2,884,974	-				+1.5
2,884,974	-				-0.9
2,884,974	-				-1.7
2,884,975	+				-0.5
2,884,975	+				-0.9
2,884,975	+				+0.5
2,884,975	+				+0.5
2,884,975	+				-0.5
2,884,975	+				-2.0
2,884,976	-				-0.8
2,884,976	-				+0.1
2,884,976	-				+1.5
2,885,017	-				+0.6
2,885,030	-				-1.6
2,885,081	-				-1.6
2,885,081	-				-1.3
2,885,085	+				-0.3
2,885,086	-				-0.5
2,885,086	-				+0.1
2,885,086	-				+1.8
2,885,086	-				-1.1
2,885,091	+				-1.3
2,885,091	+				-0.1
2,885,102	+				-0.3
2,885,115	+				-2.7
2,885,158	+				-1.1
2,885,158	+				-0.2
2,885,158	+				-0.3
2,885,162	+				+0.1
2,885,163	-				-0.6
2,885,163	-				-0.4
2,885,193	-				+1.2
2,885,196	+				+0.6
2,885,203	+				-0.6
2,885,204	-				+1.5
2,885,257	+				-0.4
2,885,260	+				-2.5
2,885,298	+				-0.3
2,885,298	+				-0.2
2,885,299	-				-0.5
2,885,299	-				+1.5
2,885,300	+				-0.1
2,885,300	+				-0.2
2,885,352	+		DZA65_RS13445	0.13	+0.9
2,885,400	+		DZA65_RS13445	0.18	+0.5
2,885,400	+		DZA65_RS13445	0.18	+0.1
2,885,400	+		DZA65_RS13445	0.18	-0.5
2,885,400	+		DZA65_RS13445	0.18	-1.2
2,885,400	+		DZA65_RS13445	0.18	-0.8
2,885,401	-		DZA65_RS13445	0.18	+0.7
2,885,401	-		DZA65_RS13445	0.18	-0.1
2,885,463	-				-0.8
2,885,463	-		DZA65_RS13445	0.25	+2.1
2,885,463	-		DZA65_RS13445	0.25	-1.1
2,885,463	-		DZA65_RS13445	0.25	-1.8
2,885,463	-		DZA65_RS13445	0.25	+0.1
2,885,531	+		DZA65_RS13445	0.32	-0.8
2,885,531	+		DZA65_RS13445	0.32	+0.0
2,885,531	+		DZA65_RS13445	0.32	+0.2
2,885,532	-		DZA65_RS13445	0.32	+1.1
2,885,550	-		DZA65_RS13445	0.34	-0.4
2,885,550	-		DZA65_RS13445	0.34	-0.8
2,885,581	+		DZA65_RS13445	0.37	+1.5
2,885,582	-		DZA65_RS13445	0.37	+1.6
2,885,582	-		DZA65_RS13445	0.37	+0.5
2,885,609	+		DZA65_RS13445	0.40	-0.5
2,885,609	+		DZA65_RS13445	0.40	+0.3
2,885,609	+		DZA65_RS13445	0.40	-0.1
2,885,609	+		DZA65_RS13445	0.40	-0.8
2,885,609	+		DZA65_RS13445	0.40	+0.1
2,885,610	-		DZA65_RS13445	0.40	+1.0
2,885,619	+		DZA65_RS13445	0.41	-1.8
2,885,619	+		DZA65_RS13445	0.41	+0.5
2,885,620	-		DZA65_RS13445	0.41	-0.5
2,885,622	+		DZA65_RS13445	0.41	+1.6
2,885,623	-		DZA65_RS13445	0.41	-0.8
2,885,659	+		DZA65_RS13445	0.45	-0.3
2,885,659	+		DZA65_RS13445	0.45	-0.1
2,885,659	+		DZA65_RS13445	0.45	-0.1
2,885,660	-		DZA65_RS13445	0.45	-0.7
2,885,663	-		DZA65_RS13445	0.46	+1.3
2,885,690	+		DZA65_RS13445	0.48	-0.3
2,885,745	-		DZA65_RS13445	0.54	+0.1
2,885,805	+		DZA65_RS13445	0.60	-1.1
2,885,806	-		DZA65_RS13445	0.60	-0.5
2,885,817	-		DZA65_RS13445	0.61	-1.3
2,885,817	-		DZA65_RS13445	0.61	+0.4
2,885,818	+		DZA65_RS13445	0.62	-1.3
2,885,818	+		DZA65_RS13445	0.62	+0.6
2,885,818	+		DZA65_RS13445	0.62	+0.3
2,885,818	+		DZA65_RS13445	0.62	-0.4
2,885,819	-		DZA65_RS13445	0.62	-2.8
2,885,835	+		DZA65_RS13445	0.63	-0.4
2,885,836	+		DZA65_RS13445	0.63	+1.2
2,885,836	+		DZA65_RS13445	0.63	+1.5
2,885,836	+		DZA65_RS13445	0.63	-0.1
2,885,837	-		DZA65_RS13445	0.64	+1.7
2,885,847	+				+0.9
2,885,847	+				-1.1
2,885,847	+		DZA65_RS13445	0.65	-0.5
2,885,847	+		DZA65_RS13445	0.65	+2.8
2,885,847	+		DZA65_RS13445	0.65	+0.5
2,885,847	+		DZA65_RS13445	0.65	+0.2
2,885,847	+		DZA65_RS13445	0.65	-0.4
2,885,848	-		DZA65_RS13445	0.65	-0.5
2,885,848	-		DZA65_RS13445	0.65	+1.5
2,885,848	-		DZA65_RS13445	0.65	+0.2
2,885,848	-		DZA65_RS13445	0.65	+0.6
2,885,851	+		DZA65_RS13445	0.65	-1.6
2,885,852	-		DZA65_RS13445	0.65	-0.7
2,885,852	-		DZA65_RS13445	0.65	+0.1
2,885,852	-		DZA65_RS13445	0.65	-0.2
2,885,852	-		DZA65_RS13445	0.65	-0.5
2,885,852	-		DZA65_RS13445	0.65	+4.4
2,885,858	+		DZA65_RS13445	0.66	+0.3
2,885,858	+		DZA65_RS13445	0.66	-1.3
2,885,859	-		DZA65_RS13445	0.66	-0.9
2,885,859	-		DZA65_RS13445	0.66	+1.5
2,885,859	-		DZA65_RS13445	0.66	-2.3
2,885,878	-		DZA65_RS13445	0.68	-2.7
2,885,878	-		DZA65_RS13445	0.68	-0.6
2,885,907	+		DZA65_RS13445	0.71	-0.3
2,885,919	-		DZA65_RS13445	0.72	+1.3
2,885,919	-		DZA65_RS13445	0.72	-0.0
2,885,919	-		DZA65_RS13445	0.72	+0.5
2,885,938	+		DZA65_RS13445	0.74	-1.0
2,885,939	-		DZA65_RS13445	0.74	+0.3
2,885,974	+		DZA65_RS13445	0.78	+0.8
2,885,974	+		DZA65_RS13445	0.78	-1.8
2,885,974	+		DZA65_RS13445	0.78	+1.4
2,885,974	+		DZA65_RS13445	0.78	+0.1
2,885,974	+		DZA65_RS13445	0.78	-0.5
2,885,974	+		DZA65_RS13445	0.78	-0.1
2,885,975	-		DZA65_RS13445	0.78	+0.1
2,885,975	-		DZA65_RS13445	0.78	+1.6
2,885,975	-		DZA65_RS13445	0.78	+0.1
2,885,975	-		DZA65_RS13445	0.78	-0.5
2,885,975	-		DZA65_RS13445	0.78	-0.5
2,885,975	-		DZA65_RS13445	0.78	-0.8
2,885,975	-		DZA65_RS13445	0.78	+2.0
2,885,975	-		DZA65_RS13445	0.78	-0.7
2,885,975	-		DZA65_RS13445	0.78	-0.6
2,885,975	-		DZA65_RS13445	0.78	+1.0
2,885,978	+		DZA65_RS13445	0.78	-0.3
2,885,978	+		DZA65_RS13445	0.78	-0.5
2,885,978	+		DZA65_RS13445	0.78	+0.4
2,885,979	-		DZA65_RS13445	0.78	+0.2
2,886,028	+		DZA65_RS13445	0.83	-1.2
2,886,028	+		DZA65_RS13445	0.83	+0.4
2,886,030	+		DZA65_RS13445	0.84	-0.3
2,886,031	-		DZA65_RS13445	0.84	+0.1
2,886,050	+		DZA65_RS13445	0.86	-0.1
2,886,050	+		DZA65_RS13445	0.86	-1.2
2,886,051	-		DZA65_RS13445	0.86	+1.0
2,886,051	-		DZA65_RS13445	0.86	-2.1
2,886,063	+		DZA65_RS13445	0.87	-2.1
2,886,063	+		DZA65_RS13445	0.87	-0.5
2,886,063	+		DZA65_RS13445	0.87	-0.8
2,886,064	-		DZA65_RS13445	0.87	+0.1
2,886,064	-		DZA65_RS13445	0.87	+1.2
2,886,064	-		DZA65_RS13445	0.87	+0.7
2,886,064	-		DZA65_RS13445	0.87	+0.7
2,886,065	+		DZA65_RS13445	0.87	+0.7
2,886,065	+		DZA65_RS13445	0.87	-0.7
2,886,065	+		DZA65_RS13445	0.87	+1.1
2,886,065	+		DZA65_RS13445	0.87	-0.7
2,886,065	+		DZA65_RS13445	0.87	+0.8
2,886,065	+		DZA65_RS13445	0.87	+0.3
2,886,075	-		DZA65_RS13445	0.88	+0.7
2,886,080	+		DZA65_RS13445	0.89	-0.5
2,886,080	+		DZA65_RS13445	0.89	+0.8
2,886,080	+		DZA65_RS13445	0.89	+0.2
2,886,081	-		DZA65_RS13445	0.89	-1.8
2,886,081	-		DZA65_RS13445	0.89	+0.7
2,886,094	+				+0.8
2,886,094	+				+0.3
2,886,094	+				+0.5
2,886,094	+				-0.5
2,886,094	+				-0.6
2,886,095	-				+0.1
2,886,095	-				-1.1
2,886,095	-				-0.4
2,886,095	-				-0.5
2,886,095	-				-0.5
2,886,100	-				+1.0
2,886,175	+				-0.7
2,886,175	+				+0.1
2,886,175	+				-0.1
2,886,175	+				-0.3
2,886,175	+				-1.3
2,886,175	+				+1.5
2,886,175	+				-0.8
2,886,175	+				+0.2
2,886,176	-				-1.6
2,886,176	-				-2.3
2,886,176	-				+0.1
2,886,209	-				-2.7
2,886,209	-				-2.1
2,886,212	+				-1.1
2,886,285	+				+0.1
2,886,285	+				+1.4
2,886,285	+				+0.2
2,886,285	+				+0.1
2,886,286	-				+0.2
2,886,286	-				-0.1
2,886,286	-				+0.5
2,886,343	+				+2.8
2,886,344	-				-0.0
2,886,354	-				-0.5
2,886,370	+				-0.3
2,886,371	-				+0.3
2,886,457	+				-0.1
2,886,457	+				+1.5
2,886,458	-				+1.2
2,886,459	+				-0.5
2,886,460	-				+0.1
2,886,484	+				-0.3
2,886,484	+				+2.1
2,886,485	-				+0.8
2,886,486	+				+0.0
2,886,486	+				-0.3
2,886,487	-				+0.1
2,886,487	-				-0.6
2,886,501	+		DZA65_RS13450	0.10	-0.3
2,886,502	-		DZA65_RS13450	0.10	-0.3
2,886,502	-		DZA65_RS13450	0.10	-0.7
2,886,502	-		DZA65_RS13450	0.10	+1.6
2,886,572	-		DZA65_RS13450	0.16	+1.2
2,886,631	-		DZA65_RS13450	0.21	-0.9
2,886,631	-		DZA65_RS13450	0.21	+0.8
2,886,631	-		DZA65_RS13450	0.21	+0.5
2,886,744	+				-0.5
2,886,745	-		DZA65_RS13450	0.31	-1.8
2,886,777	+		DZA65_RS13450	0.33	+0.1
2,886,778	-		DZA65_RS13450	0.34	+0.1
2,886,817	+		DZA65_RS13450	0.37	-0.0
2,886,817	+				-0.5
2,886,817	+		DZA65_RS13450	0.37	-0.8
2,886,817	+		DZA65_RS13450	0.37	+0.6
2,886,818	-		DZA65_RS13450	0.37	-1.0
2,886,818	-		DZA65_RS13450	0.37	-0.7
2,886,818	-		DZA65_RS13450	0.37	-0.9
2,886,818	-		DZA65_RS13450	0.37	-0.0
2,886,818	-		DZA65_RS13450	0.37	-1.0
2,886,823	+		DZA65_RS13450	0.37	-0.7
2,886,823	+		DZA65_RS13450	0.37	+0.5
2,886,823	+		DZA65_RS13450	0.37	+0.7
2,886,823	+		DZA65_RS13450	0.37	+0.4
2,886,823	+		DZA65_RS13450	0.37	-0.3
2,886,823	+		DZA65_RS13450	0.37	+1.0
2,886,823	+		DZA65_RS13450	0.37	+0.9
2,886,823	+		DZA65_RS13450	0.37	-0.4
2,886,824	-		DZA65_RS13450	0.37	-0.1
2,886,824	-		DZA65_RS13450	0.37	-0.8
2,886,824	-		DZA65_RS13450	0.37	-0.1
2,886,824	-		DZA65_RS13450	0.37	-0.7
2,886,826	+		DZA65_RS13450	0.38	+0.1
2,886,826	+		DZA65_RS13450	0.38	-0.2
2,886,827	-		DZA65_RS13450	0.38	+0.7
2,886,827	-		DZA65_RS13450	0.38	-0.8
2,886,827	-		DZA65_RS13450	0.38	+0.5
2,886,827	-		DZA65_RS13450	0.38	-1.1
2,886,931	-		DZA65_RS13450	0.46	+0.4
2,887,083	+		DZA65_RS13450	0.59	+0.6
2,887,084	-		DZA65_RS13450	0.59	+0.2
2,887,084	-		DZA65_RS13450	0.59	-0.5
2,887,108	+		DZA65_RS13450	0.61	-2.1
2,887,108	+		DZA65_RS13450	0.61	+0.1
2,887,109	-		DZA65_RS13450	0.61	-0.1
2,887,109	-		DZA65_RS13450	0.61	+1.1
2,887,109	-		DZA65_RS13450	0.61	-0.6
2,887,109	-		DZA65_RS13450	0.61	+0.5
2,887,129	+		DZA65_RS13450	0.63	-0.4
2,887,129	+		DZA65_RS13450	0.63	-1.1
2,887,129	+		DZA65_RS13450	0.63	-0.5
2,887,129	+		DZA65_RS13450	0.63	-0.0
2,887,130	-		DZA65_RS13450	0.63	-0.2
2,887,130	-		DZA65_RS13450	0.63	+0.1
2,887,130	-				-1.1
2,887,152	+		DZA65_RS13450	0.65	+1.5
2,887,152	+		DZA65_RS13450	0.65	+0.9
2,887,152	+		DZA65_RS13450	0.65	-0.3
2,887,152	+		DZA65_RS13450	0.65	-1.0
2,887,153	-		DZA65_RS13450	0.65	-0.7
2,887,153	-		DZA65_RS13450	0.65	-0.7
2,887,153	-		DZA65_RS13450	0.65	-2.7
2,887,153	-		DZA65_RS13450	0.65	-1.8
2,887,153	-		DZA65_RS13450	0.65	+0.2
2,887,153	-		DZA65_RS13450	0.65	+0.6
2,887,155	+		DZA65_RS13450	0.65	+0.8
2,887,156	-		DZA65_RS13450	0.65	-0.6
2,887,156	-		DZA65_RS13450	0.65	-0.3