Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13365

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,861,322	+		DZA65_RS13360	0.41	-1.1
2,861,322	+		DZA65_RS13360	0.41	-0.3
2,861,323	-		DZA65_RS13360	0.42	+0.4
2,861,323	-		DZA65_RS13360	0.42	-0.7
2,861,323	-		DZA65_RS13360	0.42	-1.6
2,861,323	-		DZA65_RS13360	0.42	-2.5
2,861,323	-		DZA65_RS13360	0.42	-2.0
2,861,323	-		DZA65_RS13360	0.42	+0.5
2,861,429	+				+0.5
2,861,429	+		DZA65_RS13360	0.48	+0.3
2,861,429	+		DZA65_RS13360	0.48	+0.5
2,861,429	+		DZA65_RS13360	0.48	+1.1
2,861,429	+		DZA65_RS13360	0.48	-0.0
2,861,430	-		DZA65_RS13360	0.48	-0.7
2,861,430	-		DZA65_RS13360	0.48	-1.0
2,861,430	-		DZA65_RS13360	0.48	+0.5
2,861,438	+		DZA65_RS13360	0.49	-0.2
2,861,446	-		DZA65_RS13360	0.49	-0.1
2,861,447	+		DZA65_RS13360	0.49	+1.7
2,861,448	-		DZA65_RS13360	0.49	+0.2
2,861,448	-		DZA65_RS13360	0.49	+0.5
2,861,560	+		DZA65_RS13360	0.56	-1.5
2,861,560	+		DZA65_RS13360	0.56	+0.0
2,861,561	-		DZA65_RS13360	0.56	+0.5
2,861,669	+		DZA65_RS13360	0.63	-2.8
2,861,670	-		DZA65_RS13360	0.63	-0.5
2,861,693	+		DZA65_RS13360	0.64	-0.3
2,861,693	+		DZA65_RS13360	0.64	-1.1
2,861,693	+		DZA65_RS13360	0.64	+1.3
2,861,693	+		DZA65_RS13360	0.64	+0.2
2,861,693	+		DZA65_RS13360	0.64	+0.6
2,861,693	+				-1.5
2,861,694	-		DZA65_RS13360	0.64	-0.2
2,861,694	-		DZA65_RS13360	0.64	+0.6
2,861,694	-		DZA65_RS13360	0.64	+0.8
2,861,694	-		DZA65_RS13360	0.64	+0.7
2,861,694	-		DZA65_RS13360	0.64	+1.1
2,861,694	-		DZA65_RS13360	0.64	-0.1
2,861,694	-		DZA65_RS13360	0.64	-0.5
2,861,727	+		DZA65_RS13360	0.66	-2.5
2,861,727	+		DZA65_RS13360	0.66	+0.8
2,861,805	+		DZA65_RS13360	0.71	+1.2
2,861,805	+		DZA65_RS13360	0.71	-0.3
2,861,805	+		DZA65_RS13360	0.71	+0.1
2,861,806	-		DZA65_RS13360	0.71	+0.5
2,862,067	+		DZA65_RS13360	0.87	-1.5
2,862,068	-		DZA65_RS13360	0.87	-0.2
2,862,068	-		DZA65_RS13360	0.87	-0.4
2,862,068	-		DZA65_RS13360	0.87	+0.3
2,862,068	-		DZA65_RS13360	0.87	+0.6
2,862,185	+				-2.2
2,862,186	-				+0.5
2,862,227	-				+0.8
2,862,282	+				-0.3
2,862,283	-				+0.2
2,862,374	+				-1.0
2,862,374	+				+0.3
2,862,375	-				-1.5
2,862,415	-		DZA65_RS13365	0.11	-0.3
2,862,437	-		DZA65_RS13365	0.12	-0.5
2,862,513	+		DZA65_RS13365	0.18	+0.1
2,862,513	+		DZA65_RS13365	0.18	+0.5
2,862,513	+		DZA65_RS13365	0.18	-2.0
2,862,513	+		DZA65_RS13365	0.18	+0.5
2,862,513	+		DZA65_RS13365	0.18	-1.3
2,862,513	+		DZA65_RS13365	0.18	-0.2
2,862,514	-		DZA65_RS13365	0.18	-2.8
2,862,514	-		DZA65_RS13365	0.18	-0.1
2,862,514	-		DZA65_RS13365	0.18	-1.5
2,862,514	-		DZA65_RS13365	0.18	+0.2
2,862,514	-		DZA65_RS13365	0.18	+0.5
2,862,541	-		DZA65_RS13365	0.20	+0.3
2,862,608	-		DZA65_RS13365	0.26	-0.5
2,862,608	-		DZA65_RS13365	0.26	-0.7
2,862,694	+		DZA65_RS13365	0.33	-1.0
2,862,694	+		DZA65_RS13365	0.33	-0.1
2,862,694	+		DZA65_RS13365	0.33	-1.1
2,862,695	-		DZA65_RS13365	0.33	-2.1
2,862,695	-		DZA65_RS13365	0.33	+0.2
2,862,695	-		DZA65_RS13365	0.33	-1.1
2,862,695	-		DZA65_RS13365	0.33	-1.1
2,862,697	+		DZA65_RS13365	0.33	+0.3
2,862,697	+		DZA65_RS13365	0.33	+0.1
2,862,697	+		DZA65_RS13365	0.33	+1.1
2,862,697	+		DZA65_RS13365	0.33	-0.4
2,862,697	+		DZA65_RS13365	0.33	-0.3
2,862,697	+		DZA65_RS13365	0.33	+0.5
2,862,697	+		DZA65_RS13365	0.33	-0.3
2,862,697	+		DZA65_RS13365	0.33	-0.3
2,862,697	+		DZA65_RS13365	0.33	-3.3
2,862,697	+		DZA65_RS13365	0.33	-1.0
2,862,697	+		DZA65_RS13365	0.33	-0.5
2,862,698	-		DZA65_RS13365	0.33	-0.3
2,862,698	-		DZA65_RS13365	0.33	+0.5
2,862,698	-		DZA65_RS13365	0.33	-0.7
2,862,698	-		DZA65_RS13365	0.33	-0.8
2,862,698	-		DZA65_RS13365	0.33	+1.2
2,862,698	-		DZA65_RS13365	0.33	-0.8
2,862,698	-		DZA65_RS13365	0.33	+0.2
2,862,747	+		DZA65_RS13365	0.37	-1.5
2,862,747	+		DZA65_RS13365	0.37	-0.8
2,862,747	+		DZA65_RS13365	0.37	-0.4
2,862,747	+		DZA65_RS13365	0.37	-1.1
2,862,747	+		DZA65_RS13365	0.37	+1.3
2,862,748	-		DZA65_RS13365	0.37	-0.4
2,862,820	+		DZA65_RS13365	0.42	+1.9
2,862,820	+		DZA65_RS13365	0.42	+1.5
2,862,820	+		DZA65_RS13365	0.42	+1.0
2,862,820	+		DZA65_RS13365	0.42	-0.5
2,862,820	+		DZA65_RS13365	0.42	+0.2
2,862,821	-		DZA65_RS13365	0.43	-2.0
2,863,015	+		DZA65_RS13365	0.58	-0.4
2,863,015	+		DZA65_RS13365	0.58	-0.2
2,863,015	+		DZA65_RS13365	0.58	+0.9
2,863,015	+		DZA65_RS13365	0.58	+0.1
2,863,016	-		DZA65_RS13365	0.58	-0.8
2,863,017	+		DZA65_RS13365	0.58	-2.1
2,863,017	+		DZA65_RS13365	0.58	-1.5
2,863,017	+		DZA65_RS13365	0.58	-0.3
2,863,017	+		DZA65_RS13365	0.58	+0.3
2,863,017	+		DZA65_RS13365	0.58	+0.8
2,863,017	+		DZA65_RS13365	0.58	-0.1
2,863,018	-		DZA65_RS13365	0.58	-0.8
2,863,018	-		DZA65_RS13365	0.58	-0.0
2,863,018	-		DZA65_RS13365	0.58	+0.2
2,863,018	-		DZA65_RS13365	0.58	+2.1
2,863,018	-		DZA65_RS13365	0.58	-1.5
2,863,018	-		DZA65_RS13365	0.58	-0.5
2,863,018	-		DZA65_RS13365	0.58	-1.2
2,863,018	-		DZA65_RS13365	0.58	-1.1
2,863,018	-		DZA65_RS13365	0.58	-0.0
2,863,018	-		DZA65_RS13365	0.58	-0.0
2,863,018	-				-1.1
2,863,039	+				-0.1
2,863,053	+		DZA65_RS13365	0.61	-0.4
2,863,054	-		DZA65_RS13365	0.61	-1.5
2,863,260	+		DZA65_RS13365	0.77	+0.1
2,863,260	+		DZA65_RS13365	0.77	+0.1
2,863,261	-		DZA65_RS13365	0.77	-1.1
2,863,261	-		DZA65_RS13365	0.77	-1.1
2,863,261	-		DZA65_RS13365	0.77	-0.4
2,863,378	+		DZA65_RS13365	0.86	+0.1
2,863,516	+				-1.5
2,863,516	+				+0.6
2,863,516	+				-1.1
2,863,516	+				-0.5
2,863,516	+				-0.3
2,863,516	+				-0.2
2,863,516	+				-1.1
2,863,516	+				+1.1
2,863,516	+				+1.1
2,863,516	+				-0.5
2,863,516	+				-1.5
2,863,517	-				-0.5
2,863,517	-				-0.4
2,863,517	-				+1.0
2,863,517	-				+0.2
2,863,517	-				-0.7
2,863,517	-				+0.2
2,863,517	-				+0.0
2,863,517	-				+1.0
2,863,517	-				-0.7
2,863,517	-				+0.0
2,863,517	-				-1.0
2,863,527	+				-1.7
2,863,528	-				-0.5
2,863,528	-				-0.4
2,863,656	+				-0.0
2,863,656	+				-0.5
2,863,656	+				-0.4
2,863,656	+				-2.1
2,863,656	+				-0.7
2,863,657	-				-0.3
2,863,657	-				-1.1
2,863,686	+				+0.5
2,863,686	+				-1.5
2,863,686	+				-1.1
2,863,686	+				-1.1
2,863,686	+				-0.7
2,863,896	+				-0.3
2,863,896	+				+0.5
2,863,905	-				+0.8
2,863,905	-				+0.1
2,863,942	+		DZA65_RS13370	0.11	-1.4
2,863,942	+		DZA65_RS13370	0.11	-0.5
2,863,942	+		DZA65_RS13370	0.11	+1.1
2,863,942	+		DZA65_RS13370	0.11	-0.5
2,863,942	+		DZA65_RS13370	0.11	-0.1
2,863,943	-		DZA65_RS13370	0.11	+0.2
2,863,943	-		DZA65_RS13370	0.11	-1.5
2,863,967	+		DZA65_RS13370	0.12	+0.5
2,864,000	+		DZA65_RS13370	0.14	-0.1
2,864,000	+		DZA65_RS13370	0.14	-1.6
2,864,000	+		DZA65_RS13370	0.14	+1.5
2,864,001	-		DZA65_RS13370	0.14	+1.6
2,864,001	-		DZA65_RS13370	0.14	-1.5
2,864,043	+		DZA65_RS13370	0.16	+1.9
2,864,044	-		DZA65_RS13370	0.16	-0.5
2,864,044	-		DZA65_RS13370	0.16	+0.6
2,864,096	-		DZA65_RS13370	0.19	-1.5
2,864,108	-		DZA65_RS13370	0.20	+0.1
2,864,108	-		DZA65_RS13370	0.20	-0.7
2,864,159	+		DZA65_RS13370	0.22	-1.1
2,864,159	+		DZA65_RS13370	0.22	+0.2
2,864,159	+		DZA65_RS13370	0.22	+1.1
2,864,159	+		DZA65_RS13370	0.22	+0.2
2,864,160	-		DZA65_RS13370	0.22	-0.5
2,864,261	+		DZA65_RS13370	0.28	-2.1
2,864,261	+		DZA65_RS13370	0.28	+1.1
2,864,261	+		DZA65_RS13370	0.28	-0.4
2,864,261	+		DZA65_RS13370	0.28	+0.9
2,864,262	-		DZA65_RS13370	0.28	-1.4
2,864,262	-		DZA65_RS13370	0.28	-1.5
2,864,262	-		DZA65_RS13370	0.28	+0.5
2,864,262	-		DZA65_RS13370	0.28	+0.3
2,864,507	-		DZA65_RS13370	0.40	-0.4
2,864,507	-		DZA65_RS13370	0.40	-1.1