Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12815

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,743,615	-				+0.5
2,743,624	+				+1.0
2,743,624	+				+0.8
2,743,625	-				+0.5
2,743,633	+				-1.7
2,743,658	-				+0.3
2,743,892	+		DZA65_RS12805	0.48	-1.5
2,743,892	+		DZA65_RS12805	0.48	+0.5
2,743,892	+		DZA65_RS12805	0.48	+0.2
2,743,893	-		DZA65_RS12805	0.48	-0.7
2,743,893	-		DZA65_RS12805	0.48	-0.3
2,744,234	-				-0.1
2,744,307	+				+0.9
2,744,307	+				-0.7
2,744,308	-				-0.1
2,744,308	-				-0.0
2,744,308	-				+0.1
2,744,323	+				-0.9
2,744,323	+				+1.0
2,744,323	+				+0.4
2,744,324	-				+0.7
2,744,324	-				-1.7
2,744,379	-		DZA65_RS12810	0.28	-0.9
2,744,392	+		DZA65_RS12810	0.33	-0.4
2,744,393	-		DZA65_RS12810	0.33	-0.4
2,744,432	-		DZA65_RS12810	0.48	-1.3
2,744,587	-				+0.2
2,744,594	+				+0.0
2,744,684	+				+0.3
2,744,740	-				-0.9
2,744,808	+				-0.3
2,744,808	+				-0.8
2,744,808	+				-0.3
2,744,808	+				-0.5
2,744,808	+				-1.1
2,744,808	+				-0.7
2,744,808	+				-1.4
2,744,808	+				-0.8
2,744,808	+				-0.1
2,744,809	-				+1.3
2,744,809	-				-0.1
2,744,809	-				-2.1
2,744,809	-				+0.4
2,744,809	-				-0.7
2,744,810	+				-1.0
2,744,810	+				-1.5
2,744,810	+				-1.0
2,744,811	-				-0.6
2,744,811	-				-0.2
2,744,811	-				-0.0
2,744,811	-				-0.0
2,744,917	-		DZA65_RS12815	0.12	+0.7
2,745,033	+		DZA65_RS12815	0.17	+1.2
2,745,033	+		DZA65_RS12815	0.17	+0.6
2,745,033	+		DZA65_RS12815	0.17	+1.2
2,745,034	-		DZA65_RS12815	0.17	-0.3
2,745,040	+		DZA65_RS12815	0.17	+0.9
2,745,040	+		DZA65_RS12815	0.17	+0.1
2,745,047	-		DZA65_RS12815	0.17	-0.9
2,745,158	+		DZA65_RS12815	0.22	-0.2
2,745,158	+		DZA65_RS12815	0.22	+0.3
2,745,158	+		DZA65_RS12815	0.22	+0.1
2,745,158	+		DZA65_RS12815	0.22	-0.3
2,745,159	-		DZA65_RS12815	0.22	+0.5
2,745,159	-		DZA65_RS12815	0.22	+0.7
2,745,159	-		DZA65_RS12815	0.22	-0.4
2,745,159	-		DZA65_RS12815	0.22	+1.5
2,745,159	-		DZA65_RS12815	0.22	+1.1
2,745,167	+		DZA65_RS12815	0.22	+1.5
2,745,169	+		DZA65_RS12815	0.22	-0.2
2,745,169	+		DZA65_RS12815	0.22	+0.9
2,745,169	+		DZA65_RS12815	0.22	+0.6
2,745,170	-		DZA65_RS12815	0.22	-1.0
2,745,170	-		DZA65_RS12815	0.22	+0.3
2,745,402	-		DZA65_RS12815	0.31	-0.3
2,745,414	+		DZA65_RS12815	0.32	+0.5
2,745,647	-		DZA65_RS12815	0.40	-0.5
2,745,903	+		DZA65_RS12815	0.50	+1.2
2,745,903	+		DZA65_RS12815	0.50	+0.3
2,745,940	+		DZA65_RS12815	0.52	+0.5
2,745,940	+		DZA65_RS12815	0.52	+1.1
2,745,940	+		DZA65_RS12815	0.52	-0.9
2,745,941	-		DZA65_RS12815	0.52	+1.2
2,745,941	-		DZA65_RS12815	0.52	+0.8
2,745,941	-		DZA65_RS12815	0.52	+0.5
2,745,959	+		DZA65_RS12815	0.52	-0.5
2,745,959	+		DZA65_RS12815	0.52	-1.3
2,745,959	+		DZA65_RS12815	0.52	-0.4
2,745,959	+		DZA65_RS12815	0.52	+0.2
2,745,959	+		DZA65_RS12815	0.52	+0.5
2,745,959	+		DZA65_RS12815	0.52	+0.3
2,745,959	+		DZA65_RS12815	0.52	-0.7
2,745,959	+		DZA65_RS12815	0.52	-0.8
2,745,960	-		DZA65_RS12815	0.52	+0.5
2,745,960	-		DZA65_RS12815	0.52	+1.7
2,745,960	-		DZA65_RS12815	0.52	+0.7
2,745,960	-		DZA65_RS12815	0.52	+1.3
2,745,960	-		DZA65_RS12815	0.52	+0.9
2,745,960	-		DZA65_RS12815	0.52	-0.4
2,745,960	-		DZA65_RS12815	0.52	+0.9
2,745,964	-		DZA65_RS12815	0.53	-0.7
2,746,087	+		DZA65_RS12815	0.57	+0.2
2,746,088	-		DZA65_RS12815	0.57	+1.2
2,746,091	-		DZA65_RS12815	0.58	-0.5
2,746,182	+		DZA65_RS12815	0.61	+0.9
2,746,182	+		DZA65_RS12815	0.61	-1.9
2,746,183	-		DZA65_RS12815	0.61	+0.3
2,746,293	+		DZA65_RS12815	0.65	-0.0
2,746,293	+		DZA65_RS12815	0.65	-0.9
2,746,293	+		DZA65_RS12815	0.65	+0.1
2,746,294	-		DZA65_RS12815	0.65	+0.1
2,746,294	-		DZA65_RS12815	0.65	-1.9
2,746,294	-		DZA65_RS12815	0.65	-2.1
2,746,294	-		DZA65_RS12815	0.65	-1.5
2,746,340	+		DZA65_RS12815	0.67	-0.2
2,746,340	+		DZA65_RS12815	0.67	+0.0
2,746,340	+		DZA65_RS12815	0.67	+0.2
2,746,340	+		DZA65_RS12815	0.67	-0.1
2,746,340	+		DZA65_RS12815	0.67	-1.5
2,746,341	-		DZA65_RS12815	0.67	-0.9
2,746,382	+		DZA65_RS12815	0.69	-2.7
2,746,705	+		DZA65_RS12815	0.81	-1.1
2,746,705	+		DZA65_RS12815	0.81	-1.9
2,746,706	-		DZA65_RS12815	0.81	-0.2
2,746,706	-		DZA65_RS12815	0.81	-0.1
2,746,706	-		DZA65_RS12815	0.81	-0.1
2,746,706	-		DZA65_RS12815	0.81	+0.9
2,746,750	-		DZA65_RS12815	0.83	-1.3
2,746,750	-		DZA65_RS12815	0.83	-1.5
2,746,972	-				-0.5
2,747,078	+				-0.7
2,747,079	-				-0.0
2,747,079	-				+0.5
2,747,079	-				-0.2
2,747,079	-				+2.0
2,747,112	+				-0.7
2,747,112	+				+0.0
2,747,112	+				-0.6
2,747,113	-				-1.8
2,747,113	-				+0.5
2,747,113	-				+0.2
2,747,201	+				-0.3
2,747,201	+				-0.2
2,747,202	-				+0.5
2,747,202	-				-1.4
2,747,262	-				+0.8
2,747,262	-				-0.8
2,747,262	-				-1.1
2,747,262	-				-1.5
2,747,262	-				-1.1
2,747,312	+				+0.8
2,747,319	+				+0.3
2,747,435	+				-1.6
2,747,478	+				-0.6
2,747,478	+				-0.5
2,747,480	+				+0.5
2,747,480	+				-0.3
2,747,480	+				+0.2
2,747,480	+				+1.2
2,747,480	+				-0.5
2,747,480	+				+0.6
2,747,480	+				-1.5
2,747,480	+				-0.5
2,747,480	+				-1.3
2,747,480	+				-0.9
2,747,480	+				+0.3
2,747,481	-				+0.5
2,747,481	-				+0.8
2,747,481	-				-0.3
2,747,481	-				+0.5
2,747,481	-				-1.1
2,747,481	-				+1.0
2,747,502	+				+1.9
2,747,502	+				-2.2
2,747,502	+				-0.8
2,747,502	+				-0.5
2,747,503	-				-0.6
2,747,503	-				-1.3
2,747,506	+				-2.5
2,747,507	-				-1.5
2,747,507	-				-0.0
2,747,513	+				-0.9
2,747,513	+				-0.2
2,747,527	-				-0.3
2,747,527	-				-0.9
2,747,534	+				+1.6
2,747,561	-				+1.6
2,747,608	+				-0.3
2,747,608	+				-0.3
2,747,608	+				-1.5
2,747,608	+				-1.1
2,747,609	-				+1.0
2,747,644	+				+0.5
2,747,644	+				-0.0
2,747,644	+				+0.3
2,747,644	+				-0.2
2,747,644	+				+1.8
2,747,644	+				-0.4
2,747,645	-				-1.3
2,747,645	-				-1.9
2,747,645	-				-0.6
2,747,645	-				-2.6
2,747,645	-				-1.7
2,747,645	-				-1.0
2,747,648	+				-1.9
2,747,648	+				-0.3
2,747,649	-				+0.1
2,747,649	-				+1.0
2,747,649	-				+0.2
2,747,649	-				-0.5
2,747,713	+		DZA65_RS12820	0.10	-0.7
2,747,714	-		DZA65_RS12820	0.10	+0.8
2,747,716	+		DZA65_RS12820	0.10	-1.2
2,747,716	+		DZA65_RS12820	0.10	+0.8
2,747,716	+		DZA65_RS12820	0.10	-2.0
2,747,716	+		DZA65_RS12820	0.10	+0.5
2,747,717	-		DZA65_RS12820	0.10	-1.4
2,747,717	-		DZA65_RS12820	0.10	+0.5
2,747,717	-		DZA65_RS12820	0.10	-1.9
2,747,717	-		DZA65_RS12820	0.10	-0.8
2,747,717	-		DZA65_RS12820	0.10	+1.5
2,747,719	+		DZA65_RS12820	0.11	-0.3
2,747,767	+		DZA65_RS12820	0.14	-0.3
2,747,768	-		DZA65_RS12820	0.14	+0.1
2,747,768	-		DZA65_RS12820	0.14	-0.0
2,747,772	+				-1.1
2,747,773	-		DZA65_RS12820	0.14	-2.1
2,747,773	-		DZA65_RS12820	0.14	+0.2
2,747,831	+		DZA65_RS12820	0.18	-0.5
2,747,831	+		DZA65_RS12820	0.18	+0.3
2,747,832	-		DZA65_RS12820	0.18	-1.0
2,747,885	+		DZA65_RS12820	0.21	-0.4
2,747,885	+		DZA65_RS12820	0.21	+0.1
2,747,885	+		DZA65_RS12820	0.21	+0.7
2,747,885	+		DZA65_RS12820	0.21	-0.5
2,747,885	+		DZA65_RS12820	0.21	-1.1
2,747,885	+		DZA65_RS12820	0.21	+1.5
2,747,886	-		DZA65_RS12820	0.21	+1.5
2,747,886	-		DZA65_RS12820	0.21	-1.1
2,747,886	-		DZA65_RS12820	0.21	-0.3
2,747,942	+		DZA65_RS12820	0.25	-0.9
2,748,002	+		DZA65_RS12820	0.29	+0.5
2,748,002	+		DZA65_RS12820	0.29	-0.3
2,748,003	-		DZA65_RS12820	0.29	+0.2
2,748,069	-		DZA65_RS12820	0.33	-0.1
2,748,069	-		DZA65_RS12820	0.33	+0.5
2,748,069	-		DZA65_RS12820	0.33	-0.2
2,748,069	-		DZA65_RS12820	0.33	-0.0