Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,667,500	+		DZA65_RS12465	0.84	-1.4
2,667,572	+		DZA65_RS12465	0.86	+0.1
2,667,572	+		DZA65_RS12465	0.86	+1.6
2,667,573	-		DZA65_RS12465	0.86	+0.7
2,667,651	+		DZA65_RS12465	0.88	-1.6
2,667,651	+		DZA65_RS12465	0.88	-0.0
2,667,651	+		DZA65_RS12465	0.88	+0.1
2,667,651	+		DZA65_RS12465	0.88	+0.1
2,667,651	+		DZA65_RS12465	0.88	-0.6
2,667,651	+		DZA65_RS12465	0.88	-0.4
2,667,651	+		DZA65_RS12465	0.88	-1.2
2,667,651	+		DZA65_RS12465	0.88	+0.4
2,667,652	-		DZA65_RS12465	0.88	+0.4
2,667,652	-		DZA65_RS12465	0.88	-0.2
2,667,652	-		DZA65_RS12465	0.88	+1.4
2,667,652	-		DZA65_RS12465	0.88	-0.2
2,667,652	-		DZA65_RS12465	0.88	+0.7
2,667,653	+		DZA65_RS12465	0.88	-0.6
2,667,653	+		DZA65_RS12465	0.88	+0.4
2,667,654	-		DZA65_RS12465	0.88	-0.3
2,667,654	-		DZA65_RS12465	0.88	-1.3
2,667,654	-		DZA65_RS12465	0.88	+1.7
2,667,753	+				-0.6
2,667,788	+				-0.5
2,667,789	-				-0.3
2,667,794	+				-1.6
2,667,803	+				+1.1
2,667,803	+				-0.2
2,667,803	+				+0.1
2,667,803	+				-0.2
2,667,911	+				+1.0
2,667,911	+				+0.8
2,667,912	-				-2.2
2,667,912	-				-0.5
2,667,936	+				+0.1
2,667,987	+				+0.3
2,668,017	+				+0.7
2,668,018	-				-1.9
2,668,071	-				-1.2
2,668,075	+				-1.6
2,668,138	+				-0.3
2,668,139	-				-0.2
2,668,145	+				+0.0
2,668,145	+				-0.8
2,668,145	+				-0.0
2,668,145	+				-0.8
2,668,146	-				-1.0
2,668,146	-				-1.2
2,668,146	-				+1.1
2,668,146	-				-0.9
2,668,146	-				+0.4
2,668,146	-				-1.9
2,668,146	-				+0.4
2,668,252	+				-1.2
2,668,252	+				-0.8
2,668,252	+				-0.2
2,668,252	+				+0.3
2,668,253	-				-0.7
2,668,253	-				-1.2
2,668,253	-				-0.4
2,668,253	-				-0.6
2,668,253	-				-0.6
2,668,266	+				+0.0
2,668,355	+				-0.6
2,668,356	-				+0.6
2,668,356	-				-1.2
2,668,356	-				-0.3
2,668,366	-				-0.2
2,668,366	-				-0.0
2,668,366	-				-2.8
2,668,368	+				+0.1
2,668,368	+				-0.2
2,668,368	+				+2.0
2,668,368	+				+0.2
2,668,368	+				-0.2
2,668,369	-				+0.4
2,668,434	+				-0.2
2,668,435	-				-0.4
2,668,453	-				-0.8
2,668,488	+				-0.1
2,668,488	+				-0.7
2,668,539	-				-0.4
2,668,539	-				-1.0
2,668,561	+				-2.5
2,668,562	-				+0.2
2,668,562	-				-0.7
2,668,578	+				+0.4
2,668,578	+				+1.6
2,668,578	+				-0.8
2,668,578	+				+0.9
2,668,578	+				+0.4
2,668,578	+				+2.3
2,668,578	+				-1.0
2,668,578	+				+0.6
2,668,578	+				-0.0
2,668,578	+				+1.8
2,668,578	+				+0.8
2,668,579	-				-1.0
2,668,579	-				+0.6
2,668,579	-				-2.2
2,668,579	-				-0.4
2,668,579	-				-1.0
2,668,579	-				-0.4
2,668,579	-				-2.8
2,668,579	-				-0.6
2,668,579	-				+0.4
2,668,579	-				-2.4
2,668,579	-				-0.5
2,668,579	-				-1.1
2,668,587	+				-0.2
2,668,587	+				-1.5
2,668,587	+				+0.4
2,668,588	-		DZA65_RS12470	0.10	-0.6
2,668,588	-		DZA65_RS12470	0.10	-0.0
2,668,588	-		DZA65_RS12470	0.10	+1.4
2,668,724	-		DZA65_RS12470	0.25	-0.5
2,668,724	-		DZA65_RS12470	0.25	+0.2
2,668,786	+		DZA65_RS12470	0.32	-0.3
2,668,786	+		DZA65_RS12470	0.32	+0.3
2,668,813	+		DZA65_RS12470	0.35	-1.9
2,668,813	+		DZA65_RS12470	0.35	+0.8
2,668,813	+		DZA65_RS12470	0.35	+1.8
2,668,814	-		DZA65_RS12470	0.35	-0.8
2,668,835	+		DZA65_RS12470	0.38	-1.4
2,668,835	+		DZA65_RS12470	0.38	+0.4
2,668,836	-		DZA65_RS12470	0.38	+0.4
2,668,836	-		DZA65_RS12470	0.38	-0.3
2,668,836	-		DZA65_RS12470	0.38	-2.0
2,668,836	-		DZA65_RS12470	0.38	-0.4
2,668,836	-		DZA65_RS12470	0.38	-0.2
2,668,878	+		DZA65_RS12470	0.43	-0.5
2,668,976	-		DZA65_RS12470	0.54	-1.0
2,669,013	-		DZA65_RS12470	0.58	-0.3
2,669,013	-		DZA65_RS12470	0.58	-1.3
2,669,029	+		DZA65_RS12470	0.59	+0.1
2,669,030	-		DZA65_RS12470	0.60	+0.4
2,669,074	-		DZA65_RS12470	0.65	+1.0
2,669,283	+		DZA65_RS12470	0.88	-0.1
2,669,283	+		DZA65_RS12470	0.88	+0.3
2,669,284	-		DZA65_RS12470	0.88	-1.9
2,669,308	+				-1.4
2,669,308	+				-3.5
2,669,309	-				+0.7
2,669,309	-				-0.3
2,669,309	-				-0.0
2,669,309	-				-0.0
2,669,309	-				-0.2
2,669,389	+				-0.3
2,669,409	-				+0.0
2,669,409	-				-0.6
2,669,410	+				+0.4
2,669,410	+				-1.2
2,669,411	-				-0.0
2,669,411	-				-0.3
2,669,411	-				-0.9
2,669,411	-				+0.9
2,669,411	-				+0.1
2,669,411	-				+1.4
2,669,411	-				-0.3
2,669,430	-				-0.1
2,669,430	-				-0.3
2,669,465	-				-0.9
2,669,467	+				+1.8
2,669,485	+				+1.0
2,669,485	+				-1.2
2,669,525	+				-0.9
2,669,526	-				-1.4
2,669,531	-				-0.7
2,669,531	-				+0.6
2,669,679	+		DZA65_RS12475	0.18	+0.4
2,669,727	+		DZA65_RS12475	0.23	-0.2
2,669,758	+		DZA65_RS12475	0.26	+0.4
2,669,758	+		DZA65_RS12475	0.26	+1.6
2,669,759	-		DZA65_RS12475	0.26	+1.5
2,669,759	-		DZA65_RS12475	0.26	+0.4
2,669,759	-		DZA65_RS12475	0.26	+0.1
2,669,827	-		DZA65_RS12475	0.32	+1.4
2,669,827	-		DZA65_RS12475	0.32	-0.6
2,669,842	+		DZA65_RS12475	0.34	-0.4
2,669,842	+		DZA65_RS12475	0.34	-0.4
2,669,842	+		DZA65_RS12475	0.34	-0.4
2,669,842	+		DZA65_RS12475	0.34	+0.1
2,669,842	+		DZA65_RS12475	0.34	-0.0
2,669,842	+		DZA65_RS12475	0.34	-0.2
2,669,842	+		DZA65_RS12475	0.34	+1.1
2,669,843	-		DZA65_RS12475	0.34	+1.4
2,669,843	-		DZA65_RS12475	0.34	-1.3
2,669,843	-		DZA65_RS12475	0.34	-0.7
2,669,843	-		DZA65_RS12475	0.34	+1.5
2,669,843	-		DZA65_RS12475	0.34	-1.0
2,669,843	-		DZA65_RS12475	0.34	-0.2
2,669,843	-		DZA65_RS12475	0.34	+0.3
2,669,843	-		DZA65_RS12475	0.34	+0.6
2,669,843	-		DZA65_RS12475	0.34	+0.7
2,670,121	+		DZA65_RS12475	0.61	+0.6
2,670,121	+		DZA65_RS12475	0.61	+0.7
2,670,121	+		DZA65_RS12475	0.61	+1.1
2,670,121	+		DZA65_RS12475	0.61	-0.2
2,670,121	+		DZA65_RS12475	0.61	-0.8
2,670,122	-		DZA65_RS12475	0.61	+0.2
2,670,122	-		DZA65_RS12475	0.61	-0.1
2,670,122	-		DZA65_RS12475	0.61	+0.8
2,670,127	+		DZA65_RS12475	0.62	-1.3
2,670,128	-		DZA65_RS12475	0.62	-0.9
2,670,128	-		DZA65_RS12475	0.62	+0.4
2,670,128	-		DZA65_RS12475	0.62	-0.9
2,670,144	+		DZA65_RS12475	0.63	-1.2
2,670,145	-		DZA65_RS12475	0.63	+0.3
2,670,163	+		DZA65_RS12475	0.65	+0.8
2,670,164	-		DZA65_RS12475	0.65	-0.6
2,670,196	+		DZA65_RS12475	0.68	+0.4
2,670,197	-		DZA65_RS12475	0.68	+0.1
2,670,254	+		DZA65_RS12475	0.74	+0.4
2,670,262	+		DZA65_RS12475	0.75	-0.9
2,670,262	+		DZA65_RS12475	0.75	-0.8
2,670,263	-		DZA65_RS12475	0.75	-0.2
2,670,263	-		DZA65_RS12475	0.75	+0.6
2,670,263	-		DZA65_RS12475	0.75	-1.2