Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12390

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,645,705	+				-1.4
2,645,705	+				-1.0
2,645,706	-				-1.4
2,645,707	+				-1.2
2,645,707	+				+0.5
2,645,708	-				-0.5
2,645,708	-				-0.7
2,645,708	-				+1.3
2,645,708	-				+0.8
2,645,727	+				-0.0
2,645,727	+				+0.1
2,645,727	+				+1.0
2,645,728	-				+0.4
2,645,728	-				+0.8
2,645,806	+				-1.3
2,645,806	+				-0.2
2,645,807	-				-0.6
2,645,817	+				-0.3
2,645,817	+				+0.5
2,645,818	-				+1.4
2,645,818	-				-1.2
2,645,818	-				+1.0
2,646,080	+		DZA65_RS12385	0.29	+0.4
2,646,252	+		DZA65_RS12385	0.50	-1.3
2,646,252	+		DZA65_RS12385	0.50	-0.6
2,646,252	+		DZA65_RS12385	0.50	-0.9
2,646,252	+		DZA65_RS12385	0.50	-0.6
2,646,252	+		DZA65_RS12385	0.50	+0.8
2,646,253	-		DZA65_RS12385	0.50	-0.2
2,646,253	-		DZA65_RS12385	0.50	+0.1
2,646,311	+		DZA65_RS12385	0.57	+0.4
2,646,311	+		DZA65_RS12385	0.57	-0.6
2,646,530	-		DZA65_RS12385	0.84	-0.6
2,646,530	-		DZA65_RS12385	0.84	-0.9
2,646,530	-		DZA65_RS12385	0.84	+0.2
2,646,638	+				-0.5
2,646,741	+				+0.1
2,646,741	+				-0.2
2,646,741	+				-1.0
2,646,741	+				-0.1
2,646,741	+				-1.2
2,646,741	+				+1.1
2,646,741	+				+0.0
2,646,741	+				-0.3
2,646,741	+				-0.9
2,646,741	+				-1.2
2,646,741	+				+0.8
2,646,742	-				+0.4
2,646,742	-				-1.5
2,646,742	-				-0.6
2,646,742	-				-1.8
2,646,742	-				-0.2
2,646,742	-				-0.3
2,646,742	-				+0.7
2,646,742	-				-0.4
2,646,742	-				+1.0
2,646,742	-				-0.6
2,646,750	+				-0.1
2,646,750	+				-1.2
2,646,750	+				+0.3
2,646,750	+				+0.6
2,646,750	+				-0.6
2,646,750	+				+0.4
2,646,751	-				+0.3
2,646,751	-				+1.4
2,646,751	-				-0.2
2,646,751	-				-0.3
2,646,751	-				-0.4
2,646,840	+				+2.0
2,646,841	-		DZA65_RS12390	0.11	-1.2
2,646,841	-		DZA65_RS12390	0.11	+0.4
2,646,841	-		DZA65_RS12390	0.11	+0.1
2,646,888	+		DZA65_RS12390	0.15	-0.5
2,646,888	+		DZA65_RS12390	0.15	+0.4
2,646,888	+		DZA65_RS12390	0.15	-1.0
2,646,888	+		DZA65_RS12390	0.15	+1.1
2,646,888	+		DZA65_RS12390	0.15	+0.3
2,646,888	+		DZA65_RS12390	0.15	-0.6
2,646,889	-		DZA65_RS12390	0.15	+0.9
2,646,889	-		DZA65_RS12390	0.15	-0.8
2,646,891	+		DZA65_RS12390	0.15	+0.1
2,646,942	+		DZA65_RS12390	0.19	+1.6
2,646,943	-		DZA65_RS12390	0.19	-0.2
2,646,943	-		DZA65_RS12390	0.19	-0.6
2,646,943	-		DZA65_RS12390	0.19	+0.2
2,646,943	-		DZA65_RS12390	0.19	-0.5
2,646,957	+		DZA65_RS12390	0.20	+0.0
2,646,957	+		DZA65_RS12390	0.20	-1.2
2,646,957	+		DZA65_RS12390	0.20	+0.8
2,646,957	+		DZA65_RS12390	0.20	+1.4
2,646,957	+		DZA65_RS12390	0.20	+0.2
2,646,957	+		DZA65_RS12390	0.20	+0.4
2,646,957	+		DZA65_RS12390	0.20	-1.0
2,646,957	+		DZA65_RS12390	0.20	+1.2
2,646,957	+		DZA65_RS12390	0.20	+1.6
2,646,957	+		DZA65_RS12390	0.20	-1.0
2,646,957	+		DZA65_RS12390	0.20	-0.1
2,646,957	+		DZA65_RS12390	0.20	-2.2
2,646,957	+		DZA65_RS12390	0.20	-0.3
2,646,958	-		DZA65_RS12390	0.20	-0.2
2,646,958	-		DZA65_RS12390	0.20	-0.2
2,646,958	-		DZA65_RS12390	0.20	+1.0
2,646,958	-		DZA65_RS12390	0.20	-1.4
2,646,958	-		DZA65_RS12390	0.20	-0.7
2,646,958	-		DZA65_RS12390	0.20	-0.6
2,647,014	+		DZA65_RS12390	0.25	+0.0
2,647,014	+		DZA65_RS12390	0.25	-0.2
2,647,014	+		DZA65_RS12390	0.25	+0.2
2,647,014	+		DZA65_RS12390	0.25	+0.1
2,647,014	+		DZA65_RS12390	0.25	-1.3
2,647,014	+		DZA65_RS12390	0.25	-0.6
2,647,014	+		DZA65_RS12390	0.25	-2.9
2,647,014	+		DZA65_RS12390	0.25	+1.3
2,647,014	+		DZA65_RS12390	0.25	-0.1
2,647,014	+		DZA65_RS12390	0.25	+0.4
2,647,014	+		DZA65_RS12390	0.25	-0.0
2,647,014	+		DZA65_RS12390	0.25	+0.0
2,647,015	-		DZA65_RS12390	0.25	+0.1
2,647,015	-		DZA65_RS12390	0.25	+0.1
2,647,015	-		DZA65_RS12390	0.25	-0.3
2,647,015	-		DZA65_RS12390	0.25	-0.4
2,647,015	-		DZA65_RS12390	0.25	-0.8
2,647,015	-		DZA65_RS12390	0.25	-1.7
2,647,015	-		DZA65_RS12390	0.25	+0.4
2,647,015	-		DZA65_RS12390	0.25	-0.4
2,647,015	-		DZA65_RS12390	0.25	+0.2
2,647,015	-		DZA65_RS12390	0.25	+0.4
2,647,015	-		DZA65_RS12390	0.25	-0.8
2,647,044	+		DZA65_RS12390	0.27	+0.1
2,647,044	+		DZA65_RS12390	0.27	-0.3
2,647,044	+		DZA65_RS12390	0.27	-1.9
2,647,044	+		DZA65_RS12390	0.27	-0.9
2,647,044	+		DZA65_RS12390	0.27	-0.5
2,647,044	+		DZA65_RS12390	0.27	+1.7
2,647,045	-		DZA65_RS12390	0.27	-1.0
2,647,045	-		DZA65_RS12390	0.27	-0.6
2,647,045	-		DZA65_RS12390	0.27	-0.1
2,647,045	-		DZA65_RS12390	0.27	+2.6
2,647,092	+		DZA65_RS12390	0.31	-0.9
2,647,092	+		DZA65_RS12390	0.31	-0.3
2,647,102	+		DZA65_RS12390	0.32	-1.8
2,647,102	+		DZA65_RS12390	0.32	+1.5
2,647,291	-		DZA65_RS12390	0.47	-0.3
2,647,371	+		DZA65_RS12390	0.53	+0.4
2,647,371	+		DZA65_RS12390	0.53	-0.8
2,647,371	+		DZA65_RS12390	0.53	-0.3
2,647,371	+		DZA65_RS12390	0.53	-0.8
2,647,372	-		DZA65_RS12390	0.53	+2.0
2,647,372	-		DZA65_RS12390	0.53	-0.7
2,647,372	-		DZA65_RS12390	0.53	+0.7
2,647,372	-		DZA65_RS12390	0.53	-0.2
2,647,372	-		DZA65_RS12390	0.53	-0.9
2,647,372	-		DZA65_RS12390	0.53	-0.1
2,647,426	+		DZA65_RS12390	0.57	-1.2
2,647,426	+		DZA65_RS12390	0.57	+0.5
2,647,426	+		DZA65_RS12390	0.57	-1.0
2,647,426	+		DZA65_RS12390	0.57	-0.3
2,647,427	-		DZA65_RS12390	0.57	-0.2
2,647,449	+		DZA65_RS12390	0.59	-2.4
2,647,449	+		DZA65_RS12390	0.59	+0.4
2,647,450	-		DZA65_RS12390	0.59	+0.5
2,647,450	-		DZA65_RS12390	0.59	-0.4
2,647,450	-		DZA65_RS12390	0.59	-0.3
2,647,450	-		DZA65_RS12390	0.59	-1.1
2,647,452	+		DZA65_RS12390	0.59	-0.9
2,647,452	+		DZA65_RS12390	0.59	-0.4
2,647,452	+		DZA65_RS12390	0.59	-0.4
2,647,453	-		DZA65_RS12390	0.59	-2.2
2,647,614	+		DZA65_RS12390	0.72	-0.2
2,647,614	+		DZA65_RS12390	0.72	+0.0
2,647,615	-		DZA65_RS12390	0.72	+1.2
2,647,969	+				-0.4
2,647,969	+				+0.4
2,647,970	-				+0.5
2,647,970	-				-1.2
2,647,970	-				+1.0
2,647,970	-				-0.1
2,647,970	-				-0.4
2,647,970	-				-2.2
2,647,970	-				+0.1
2,647,970	-				+1.2
2,647,970	-				+2.4
2,647,970	-				-1.6
2,648,007	+				+0.6
2,648,007	+				+0.1
2,648,008	-				+0.9
2,648,251	+		DZA65_RS12395	0.24	-2.4
2,648,251	+		DZA65_RS12395	0.24	+2.9
2,648,251	+		DZA65_RS12395	0.24	-0.0
2,648,251	+		DZA65_RS12395	0.24	-0.7
2,648,252	-		DZA65_RS12395	0.24	+1.1
2,648,252	-		DZA65_RS12395	0.24	+1.2
2,648,281	+		DZA65_RS12395	0.27	-1.0
2,648,282	-		DZA65_RS12395	0.27	+0.4
2,648,292	+				+2.0
2,648,315	-		DZA65_RS12395	0.30	+0.0
2,648,361	+		DZA65_RS12395	0.34	+0.4
2,648,362	-		DZA65_RS12395	0.34	-2.6
2,648,362	-		DZA65_RS12395	0.34	+0.4
2,648,362	-		DZA65_RS12395	0.34	+0.7
2,648,502	+		DZA65_RS12395	0.48	+3.2
2,648,503	-		DZA65_RS12395	0.48	+0.6
2,648,503	-		DZA65_RS12395	0.48	-0.1
2,648,503	-		DZA65_RS12395	0.48	+0.7
2,648,503	-				+1.4
2,648,503	-		DZA65_RS12395	0.48	-1.4
2,648,503	-		DZA65_RS12395	0.48	-0.5
2,648,650	+		DZA65_RS12395	0.62	-0.2
2,648,652	+		DZA65_RS12395	0.63	-1.6
2,648,652	+		DZA65_RS12395	0.63	-1.8
2,648,652	+		DZA65_RS12395	0.63	-0.1
2,648,652	+		DZA65_RS12395	0.63	-0.3
2,648,652	+		DZA65_RS12395	0.63	+0.4
2,648,653	-		DZA65_RS12395	0.63	-0.3
2,648,653	-		DZA65_RS12395	0.63	-0.3
2,648,653	-		DZA65_RS12395	0.63	-0.6
2,648,665	+		DZA65_RS12395	0.64	-1.8
2,648,666	-		DZA65_RS12395	0.64	+0.4
2,648,868	+		DZA65_RS12395	0.84	-0.9
2,648,869	-		DZA65_RS12395	0.84	-0.2
2,648,869	-		DZA65_RS12395	0.84	-1.4
2,648,869	-		DZA65_RS12395	0.84	-1.6
2,648,916	+		DZA65_RS12395	0.88	-1.0
2,648,916	+		DZA65_RS12395	0.88	+0.4