Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12380

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,643,969	+				+0.1
2,643,970	-				+1.0
2,643,997	+				-0.6
2,643,997	+				-1.6
2,643,998	-				-0.2
2,643,998	-				-1.4
2,644,020	-				-1.4
2,644,032	-				+0.6
2,644,078	+				-1.0
2,644,079	-				-0.7
2,644,079	-				-0.2
2,644,079	-				-0.3
2,644,102	+				-0.6
2,644,103	-				-0.1
2,644,103	-				+0.1
2,644,193	+		DZA65_RS12375	0.19	-1.0
2,644,257	-		DZA65_RS12375	0.27	-0.0
2,644,287	+		DZA65_RS12375	0.31	-0.6
2,644,287	+		DZA65_RS12375	0.31	+0.7
2,644,287	+		DZA65_RS12375	0.31	-0.3
2,644,287	+		DZA65_RS12375	0.31	-0.2
2,644,288	-		DZA65_RS12375	0.31	-0.9
2,644,288	-		DZA65_RS12375	0.31	-0.2
2,644,288	-		DZA65_RS12375	0.31	+0.4
2,644,288	-		DZA65_RS12375	0.31	-1.6
2,644,288	-		DZA65_RS12375	0.31	+1.2
2,644,288	-		DZA65_RS12375	0.31	+0.4
2,644,288	-		DZA65_RS12375	0.31	-0.4
2,644,288	-		DZA65_RS12375	0.31	+1.4
2,644,288	-		DZA65_RS12375	0.31	+1.1
2,644,333	-		DZA65_RS12375	0.36	+0.4
2,644,355	-		DZA65_RS12375	0.39	+1.0
2,644,359	+		DZA65_RS12375	0.40	-1.4
2,644,421	+		DZA65_RS12375	0.47	+0.1
2,644,502	+		DZA65_RS12375	0.58	-1.2
2,644,502	+		DZA65_RS12375	0.58	-0.3
2,644,503	-		DZA65_RS12375	0.58	+0.0
2,644,504	+		DZA65_RS12375	0.58	-0.2
2,644,504	+		DZA65_RS12375	0.58	-2.1
2,644,504	+		DZA65_RS12375	0.58	-0.1
2,644,504	+		DZA65_RS12375	0.58	+1.1
2,644,504	+		DZA65_RS12375	0.58	+0.7
2,644,504	+		DZA65_RS12375	0.58	+0.4
2,644,504	+		DZA65_RS12375	0.58	+0.2
2,644,504	+		DZA65_RS12375	0.58	+0.5
2,644,505	-		DZA65_RS12375	0.58	-0.1
2,644,505	-		DZA65_RS12375	0.58	+0.4
2,644,505	-		DZA65_RS12375	0.58	-0.2
2,644,505	-		DZA65_RS12375	0.58	+0.9
2,644,505	-		DZA65_RS12375	0.58	-0.3
2,644,505	-		DZA65_RS12375	0.58	+3.6
2,644,505	-		DZA65_RS12375	0.58	+0.1
2,644,505	-		DZA65_RS12375	0.58	-2.4
2,644,505	-		DZA65_RS12375	0.58	+0.0
2,644,728	+		DZA65_RS12375	0.86	-0.8
2,644,731	+		DZA65_RS12375	0.87	-0.7
2,644,731	+		DZA65_RS12375	0.87	+1.7
2,644,732	-		DZA65_RS12375	0.87	-0.2
2,644,839	+				-0.5
2,644,839	+				+1.4
2,644,873	+				-0.7
2,644,873	+				-0.1
2,644,873	+				+0.7
2,644,873	+				-0.2
2,644,873	+				+0.8
2,644,873	+				+0.0
2,644,873	+				-0.4
2,644,873	+				+0.2
2,644,874	-				+0.8
2,644,874	-				-0.6
2,644,874	-				-2.3
2,645,005	+				-0.1
2,645,030	+		DZA65_RS12380	0.10	+1.1
2,645,030	+				+1.4
2,645,030	+		DZA65_RS12380	0.10	-0.4
2,645,030	+		DZA65_RS12380	0.10	+0.0
2,645,050	+		DZA65_RS12380	0.13	-0.6
2,645,050	+		DZA65_RS12380	0.13	+1.4
2,645,051	-		DZA65_RS12380	0.13	-0.8
2,645,051	-		DZA65_RS12380	0.13	-0.7
2,645,051	-		DZA65_RS12380	0.13	-0.1
2,645,051	-		DZA65_RS12380	0.13	+0.9
2,645,051	-		DZA65_RS12380	0.13	-0.5
2,645,105	+		DZA65_RS12380	0.20	-0.8
2,645,105	+		DZA65_RS12380	0.20	+1.4
2,645,105	+		DZA65_RS12380	0.20	-2.2
2,645,105	+		DZA65_RS12380	0.20	-1.0
2,645,105	+		DZA65_RS12380	0.20	-0.1
2,645,105	+		DZA65_RS12380	0.20	+0.3
2,645,105	+		DZA65_RS12380	0.20	+1.5
2,645,106	-		DZA65_RS12380	0.20	-1.4
2,645,106	-		DZA65_RS12380	0.20	-0.3
2,645,106	-		DZA65_RS12380	0.20	-2.0
2,645,106	-		DZA65_RS12380	0.20	-0.9
2,645,106	-		DZA65_RS12380	0.20	+0.0
2,645,106	-		DZA65_RS12380	0.20	+0.1
2,645,106	-		DZA65_RS12380	0.20	-0.3
2,645,106	-		DZA65_RS12380	0.20	-0.4
2,645,106	-		DZA65_RS12380	0.20	-1.7
2,645,106	-		DZA65_RS12380	0.20	-1.2
2,645,106	-		DZA65_RS12380	0.20	-0.3
2,645,106	-		DZA65_RS12380	0.20	-0.2
2,645,106	-		DZA65_RS12380	0.20	-0.1
2,645,106	-		DZA65_RS12380	0.20	+0.1
2,645,106	-		DZA65_RS12380	0.20	+0.2
2,645,106	-		DZA65_RS12380	0.20	-2.2
2,645,106	-		DZA65_RS12380	0.20	+0.3
2,645,107	+		DZA65_RS12380	0.20	+0.0
2,645,107	+		DZA65_RS12380	0.20	-0.3
2,645,107	+		DZA65_RS12380	0.20	-0.6
2,645,107	+		DZA65_RS12380	0.20	+0.4
2,645,107	+		DZA65_RS12380	0.20	+0.1
2,645,108	-		DZA65_RS12380	0.20	-0.9
2,645,108	-		DZA65_RS12380	0.20	+1.9
2,645,108	-		DZA65_RS12380	0.20	+0.8
2,645,108	-		DZA65_RS12380	0.20	-0.6
2,645,119	+		DZA65_RS12380	0.22	-0.5
2,645,119	+		DZA65_RS12380	0.22	-1.6
2,645,120	-		DZA65_RS12380	0.22	+0.3
2,645,121	+		DZA65_RS12380	0.22	-0.4
2,645,121	+		DZA65_RS12380	0.22	-1.5
2,645,121	+		DZA65_RS12380	0.22	-0.4
2,645,121	+		DZA65_RS12380	0.22	-0.3
2,645,122	-				+1.4
2,645,162	+		DZA65_RS12380	0.27	+2.2
2,645,162	+		DZA65_RS12380	0.27	-0.0
2,645,162	+		DZA65_RS12380	0.27	+0.3
2,645,163	-		DZA65_RS12380	0.27	-1.2
2,645,163	-		DZA65_RS12380	0.27	-0.1
2,645,163	-		DZA65_RS12380	0.27	+0.9
2,645,393	-		DZA65_RS12380	0.57	-1.4
2,645,393	-		DZA65_RS12380	0.57	-1.3
2,645,393	-		DZA65_RS12380	0.57	+0.7
2,645,393	-		DZA65_RS12380	0.57	-0.7
2,645,447	+		DZA65_RS12380	0.64	+0.6
2,645,447	+		DZA65_RS12380	0.64	+1.2
2,645,447	+		DZA65_RS12380	0.64	-2.6
2,645,447	+		DZA65_RS12380	0.64	-0.9
2,645,451	+		DZA65_RS12380	0.64	-0.6
2,645,451	+		DZA65_RS12380	0.64	+0.7
2,645,451	+		DZA65_RS12380	0.64	-0.7
2,645,451	+		DZA65_RS12380	0.64	-0.1
2,645,452	-		DZA65_RS12380	0.64	+0.5
2,645,509	+		DZA65_RS12380	0.72	-1.0
2,645,510	-		DZA65_RS12380	0.72	+0.0
2,645,518	-		DZA65_RS12380	0.73	-1.0
2,645,705	+				-1.4
2,645,705	+				-1.0
2,645,706	-				-1.4
2,645,707	+				-1.2
2,645,707	+				+0.5
2,645,708	-				-0.5
2,645,708	-				-0.7
2,645,708	-				+1.3
2,645,708	-				+0.8
2,645,727	+				-0.0
2,645,727	+				+0.1
2,645,727	+				+1.0
2,645,728	-				+0.4
2,645,728	-				+0.8
2,645,806	+				-1.3
2,645,806	+				-0.2
2,645,807	-				-0.6
2,645,817	+				-0.3
2,645,817	+				+0.5
2,645,818	-				+1.4
2,645,818	-				-1.2
2,645,818	-				+1.0
2,646,080	+		DZA65_RS12385	0.29	+0.4
2,646,252	+		DZA65_RS12385	0.50	-1.3
2,646,252	+		DZA65_RS12385	0.50	-0.6
2,646,252	+		DZA65_RS12385	0.50	-0.9
2,646,252	+		DZA65_RS12385	0.50	-0.6
2,646,252	+		DZA65_RS12385	0.50	+0.8
2,646,253	-		DZA65_RS12385	0.50	-0.2
2,646,253	-		DZA65_RS12385	0.50	+0.1
2,646,311	+		DZA65_RS12385	0.57	+0.4
2,646,311	+		DZA65_RS12385	0.57	-0.6
2,646,530	-		DZA65_RS12385	0.84	-0.6
2,646,530	-		DZA65_RS12385	0.84	-0.9
2,646,530	-		DZA65_RS12385	0.84	+0.2
2,646,638	+				-0.5