Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11845

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,525,940	+		DZA65_RS11840	0.44	-1.1
2,525,940	+		DZA65_RS11840	0.44	-1.0
2,525,941	-		DZA65_RS11840	0.44	+0.4
2,525,947	+		DZA65_RS11840	0.45	-0.4
2,526,064	+		DZA65_RS11840	0.58	-0.4
2,526,123	+		DZA65_RS11840	0.65	-0.3
2,526,124	-		DZA65_RS11840	0.65	-2.1
2,526,124	-		DZA65_RS11840	0.65	-0.6
2,526,140	+		DZA65_RS11840	0.67	-0.9
2,526,140	+		DZA65_RS11840	0.67	-0.2
2,526,140	+		DZA65_RS11840	0.67	-0.3
2,526,140	+		DZA65_RS11840	0.67	-0.2
2,526,140	+		DZA65_RS11840	0.67	-0.4
2,526,140	+		DZA65_RS11840	0.67	-0.6
2,526,141	-		DZA65_RS11840	0.67	+0.4
2,526,141	-		DZA65_RS11840	0.67	+0.4
2,526,141	-		DZA65_RS11840	0.67	-0.0
2,526,141	-		DZA65_RS11840	0.67	-1.0
2,526,141	-		DZA65_RS11840	0.67	-2.0
2,526,144	+		DZA65_RS11840	0.67	-0.6
2,526,144	+		DZA65_RS11840	0.67	-2.0
2,526,145	-		DZA65_RS11840	0.67	+1.4
2,526,159	+				+0.4
2,526,160	-		DZA65_RS11840	0.69	-0.0
2,526,273	+		DZA65_RS11840	0.82	-0.2
2,526,273	+		DZA65_RS11840	0.82	+0.4
2,526,274	-		DZA65_RS11840	0.82	+1.7
2,526,274	-		DZA65_RS11840	0.82	-0.9
2,526,274	-		DZA65_RS11840	0.82	-2.2
2,526,291	+		DZA65_RS11840	0.84	-0.6
2,526,291	+		DZA65_RS11840	0.84	-0.2
2,526,292	-		DZA65_RS11840	0.84	-0.2
2,526,292	-		DZA65_RS11840	0.84	+0.6
2,526,313	+		DZA65_RS11840	0.86	-0.6
2,526,314	-		DZA65_RS11840	0.86	+0.4
2,526,328	-		DZA65_RS11840	0.88	-0.4
2,526,369	+				+0.6
2,526,370	-				-0.2
2,526,370	-				-0.4
2,526,426	+				+0.2
2,526,427	-				-0.2
2,526,435	+				-2.2
2,526,435	+				+0.0
2,526,435	+				-2.4
2,526,435	+				-2.6
2,526,436	-				-0.5
2,526,436	-				-0.9
2,526,436	-				-0.1
2,526,436	-				+0.6
2,526,436	-				-0.2
2,526,436	-				-0.4
2,526,436	-				-0.3
2,526,436	-				-0.5
2,526,436	-				+1.0
2,526,436	-				-0.6
2,526,525	+				+0.5
2,526,532	+				+0.1
2,526,533	-				-0.2
2,526,533	-				+1.4
2,526,545	+				+1.4
2,526,546	-				+1.1
2,526,556	+				-0.2
2,526,598	+				+1.3
2,526,598	+				-0.9
2,526,598	+				+0.9
2,526,598	+				-1.2
2,526,598	+				+0.4
2,526,599	-				+0.7
2,526,599	-				+0.4
2,526,599	-				+0.2
2,526,623	+				-1.3
2,526,657	+				-0.1
2,526,657	+				-0.1
2,526,657	+				-0.6
2,526,658	-				-0.1
2,526,658	-				+0.4
2,526,686	+				-0.0
2,526,687	-				-0.5
2,526,704	+				-2.2
2,526,705	-				-1.5
2,526,705	-				-0.2
2,526,705	-				+1.1
2,526,707	+				-0.4
2,526,708	-				-0.1
2,526,712	+				-0.6
2,526,713	-				-0.4
2,526,713	-				-0.3
2,526,730	+				-1.1
2,526,731	-				+0.4
2,526,834	-				+0.2
2,526,842	+				-1.8
2,526,842	+				-0.5
2,526,843	-				+1.0
2,526,843	-				+0.6
2,526,843	-				-0.4
2,526,843	-				-0.9
2,526,843	-				-0.4
2,526,843	-				-0.2
2,526,843	-				+1.0
2,526,843	-				+0.1
2,526,854	+				+0.5
2,526,854	+				+0.0
2,526,854	+				-0.3
2,526,854	+				-1.3
2,526,854	+				+0.9
2,526,854	+				-0.1
2,526,854	+				-0.8
2,526,854	+				-0.2
2,526,854	+				-1.0
2,526,854	+				+1.9
2,526,854	+				+0.8
2,526,854	+				-0.9
2,526,854	+				+2.0
2,526,854	+				-0.4
2,526,854	+				-0.5
2,526,855	-				-2.2
2,526,855	-				-0.3
2,526,855	-				-1.2
2,526,855	-				-0.3
2,526,855	-				+0.3
2,526,855	-				-0.1
2,526,855	-				+0.0
2,526,855	-				-2.0
2,526,855	-				-2.4
2,526,855	-				+0.1
2,526,859	-				+0.4
2,526,859	-				+1.1
2,526,886	+				+0.2
2,526,886	+				+1.0
2,526,887	-				+2.6
2,526,887	-				+0.7
2,526,900	-				+2.0
2,526,977	+				+0.8
2,526,978	-				+0.0
2,527,079	+				+0.4
2,527,079	+				-1.6
2,527,079	+				+0.4
2,527,080	-				+0.1
2,527,080	-				+0.7
2,527,125	+		DZA65_RS11845	0.10	+1.0
2,527,125	+				+1.0
2,527,125	+		DZA65_RS11845	0.10	-0.9
2,527,125	+		DZA65_RS11845	0.10	+0.6
2,527,125	+		DZA65_RS11845	0.10	-1.6
2,527,125	+		DZA65_RS11845	0.10	+0.1
2,527,126	-		DZA65_RS11845	0.10	+0.3
2,527,126	-		DZA65_RS11845	0.10	-0.8
2,527,126	-		DZA65_RS11845	0.10	+0.6
2,527,126	-		DZA65_RS11845	0.10	-1.2
2,527,126	-		DZA65_RS11845	0.10	+0.4
2,527,152	+		DZA65_RS11845	0.12	-2.4
2,527,208	+		DZA65_RS11845	0.14	-0.4
2,527,239	+		DZA65_RS11845	0.16	-1.2
2,527,239	+		DZA65_RS11845	0.16	-1.4
2,527,240	-		DZA65_RS11845	0.16	+0.0
2,527,266	+		DZA65_RS11845	0.17	+0.0
2,527,266	+		DZA65_RS11845	0.17	+1.0
2,527,267	-		DZA65_RS11845	0.17	-0.0
2,527,267	-		DZA65_RS11845	0.17	-0.4
2,527,267	-		DZA65_RS11845	0.17	+0.4
2,527,285	+		DZA65_RS11845	0.18	+0.2
2,527,521	+		DZA65_RS11845	0.29	-0.6
2,527,521	+		DZA65_RS11845	0.29	-1.4
2,527,522	-		DZA65_RS11845	0.29	+1.0
2,527,548	+		DZA65_RS11845	0.30	-0.8
2,527,548	+		DZA65_RS11845	0.30	+0.4
2,527,548	+		DZA65_RS11845	0.30	+0.8
2,527,548	+		DZA65_RS11845	0.30	+0.7
2,527,548	+		DZA65_RS11845	0.30	+0.3
2,527,549	-		DZA65_RS11845	0.30	-0.6
2,527,549	-		DZA65_RS11845	0.30	-0.6
2,527,549	-		DZA65_RS11845	0.30	-1.6
2,527,549	-		DZA65_RS11845	0.30	+0.1
2,527,549	-		DZA65_RS11845	0.30	+0.9
2,527,549	-		DZA65_RS11845	0.30	-0.6
2,527,549	-		DZA65_RS11845	0.30	-0.6
2,527,550	+		DZA65_RS11845	0.30	+3.0
2,527,550	+		DZA65_RS11845	0.30	+1.4
2,527,551	-		DZA65_RS11845	0.30	-0.4
2,527,551	-		DZA65_RS11845	0.30	+0.3
2,527,551	-		DZA65_RS11845	0.30	+0.4
2,527,551	-		DZA65_RS11845	0.30	+1.1
2,527,593	+		DZA65_RS11845	0.32	-1.4
2,527,594	-		DZA65_RS11845	0.32	-2.7
2,527,622	+		DZA65_RS11845	0.33	+2.1
2,527,623	-		DZA65_RS11845	0.33	-0.6
2,527,623	-		DZA65_RS11845	0.33	-1.0
2,527,649	+		DZA65_RS11845	0.34	+1.1
2,527,650	-		DZA65_RS11845	0.34	+0.7
2,527,731	+		DZA65_RS11845	0.38	+0.6
2,527,732	-		DZA65_RS11845	0.38	+0.6
2,527,732	-		DZA65_RS11845	0.38	+1.2
2,527,754	+				+0.4
2,527,754	+		DZA65_RS11845	0.39	-0.4
2,527,755	-		DZA65_RS11845	0.39	+0.6
2,527,755	-		DZA65_RS11845	0.39	+1.6
2,527,755	-		DZA65_RS11845	0.39	-0.1
2,527,756	+		DZA65_RS11845	0.39	+1.2
2,527,756	+		DZA65_RS11845	0.39	+2.6
2,527,757	-		DZA65_RS11845	0.39	+1.3
2,527,757	-		DZA65_RS11845	0.39	+0.3
2,527,757	-		DZA65_RS11845	0.39	+1.5
2,527,811	+		DZA65_RS11845	0.42	-2.2
2,527,812	-		DZA65_RS11845	0.42	+1.1
2,527,812	-		DZA65_RS11845	0.42	+0.5
2,527,812	-		DZA65_RS11845	0.42	+2.0
2,527,812	-		DZA65_RS11845	0.42	+0.2
2,527,879	-		DZA65_RS11845	0.45	+1.6
2,527,883	+		DZA65_RS11845	0.45	-1.6
2,527,883	+		DZA65_RS11845	0.45	+0.4
2,527,883	+		DZA65_RS11845	0.45	+0.2
2,527,884	-		DZA65_RS11845	0.45	+0.4
2,527,884	-		DZA65_RS11845	0.45	-0.3
2,527,995	+		DZA65_RS11845	0.50	+0.7
2,527,995	+		DZA65_RS11845	0.50	+0.4
2,527,995	+		DZA65_RS11845	0.50	+0.2
2,527,995	+		DZA65_RS11845	0.50	-0.0
2,527,995	+		DZA65_RS11845	0.50	+0.2
2,527,995	+		DZA65_RS11845	0.50	-1.4
2,527,996	-		DZA65_RS11845	0.50	-1.3
2,527,996	-		DZA65_RS11845	0.50	+1.4
2,527,996	-		DZA65_RS11845	0.50	+0.2
2,528,003	-		DZA65_RS11845	0.51	+0.3
2,528,229	+		DZA65_RS11845	0.61	+0.2
2,528,230	-		DZA65_RS11845	0.61	+0.9
2,528,325	+		DZA65_RS11845	0.66	+0.4
2,528,383	+		DZA65_RS11845	0.68	-1.0
2,528,383	+				+0.4
2,528,383	+		DZA65_RS11845	0.68	+2.4
2,528,383	+		DZA65_RS11845	0.68	-0.0
2,528,383	+		DZA65_RS11845	0.68	-0.2
2,528,383	+		DZA65_RS11845	0.68	+0.0
2,528,384	-		DZA65_RS11845	0.68	+0.7
2,528,384	-		DZA65_RS11845	0.68	-2.2
2,528,384	-		DZA65_RS11845	0.68	+0.5
2,528,384	-		DZA65_RS11845	0.68	+0.6
2,528,384	-		DZA65_RS11845	0.68	+0.2
2,528,401	-		DZA65_RS11845	0.69	+0.7
2,528,433	+		DZA65_RS11845	0.71	+1.5
2,528,450	+		DZA65_RS11845	0.71	+2.0
2,528,450	+		DZA65_RS11845	0.71	+0.0
2,528,451	-		DZA65_RS11845	0.71	+1.1
2,528,490	+		DZA65_RS11845	0.73	+2.7
2,528,491	-		DZA65_RS11845	0.73	+0.9
2,528,596	+		DZA65_RS11845	0.78	-0.6
2,528,597	-		DZA65_RS11845	0.78	+0.4
2,528,597	-		DZA65_RS11845	0.78	+0.0
2,528,597	-		DZA65_RS11845	0.78	-0.0
2,528,634	+		DZA65_RS11845	0.80	-0.5
2,528,635	-		DZA65_RS11845	0.80	-1.7
2,528,673	+		DZA65_RS11845	0.82	+0.9
2,528,679	+		DZA65_RS11845	0.82	+0.7
2,528,680	-		DZA65_RS11845	0.82	+0.2
2,528,680	-		DZA65_RS11845	0.82	+1.0
2,528,686	+		DZA65_RS11845	0.82	+0.3
2,528,686	+		DZA65_RS11845	0.82	+0.5
2,528,687	-		DZA65_RS11845	0.82	+1.2
2,528,687	-		DZA65_RS11845	0.82	-0.4
2,528,687	-		DZA65_RS11845	0.82	+0.4
2,528,772	+		DZA65_RS11845	0.86	-1.6
2,529,003	+				+0.4
2,529,004	-				+0.2
2,529,014	+				-0.3
2,529,051	+				-0.4
2,529,051	+				-0.0
2,529,052	-				+1.2
2,529,121	+				-0.0
2,529,122	-				-0.6
2,529,122	-				+0.4
2,529,145	-				-0.6
2,529,145	-				+0.4
2,529,145	-				-1.2
2,529,150	-				-0.7
2,529,212	-				+1.0
2,529,219	+				+0.0
2,529,227	+				-0.2
2,529,227	+				+0.4
2,529,227	+				+0.8
2,529,228	-				-0.1
2,529,228	-				+0.2
2,529,228	-				-0.4
2,529,228	-				+0.9
2,529,230	+				-0.2
2,529,230	+				-1.2
2,529,231	-				-0.6
2,529,409	-				-1.0
2,529,448	+				+1.0
2,529,455	-				-1.5
2,529,480	-				-2.4
2,529,480	-				-0.3
2,529,504	-				-0.5
2,529,533	-				-1.2
2,529,549	-				-2.0
2,529,575	+				+0.4
2,529,576	-				+1.1
2,529,576	-				+0.3
2,529,595	+				-0.2
2,529,595	+				-0.5
2,529,596	-				+0.3
2,529,596	-				-0.3
2,529,596	-				-0.6
2,529,596	-				+1.4
2,529,596	-				+0.9
2,529,610	+				-0.5
2,529,610	+				+0.4
2,529,611	-				-0.6
2,529,630	+				+0.4
2,529,630	+				-0.6
2,529,736	+				+0.0
2,529,737	-				+0.4
2,529,737	-				-1.6
2,529,739	+				-0.9
2,529,739	+				-1.2
2,529,739	+				+1.2
2,529,771	+				+0.2
2,529,772	-				+0.9
2,529,772	-				-0.3
2,529,806	+				+0.1
2,529,806	+				-1.8
2,529,807	-				-0.5
2,529,807	-				+1.0
2,529,807	-				+0.1
2,529,807	-				-1.2
2,529,825	+				-1.0
2,529,910	+				-0.1
2,529,911	-				-0.5
2,529,911	-				+0.0
2,529,915	-				-0.1