Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11600

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,474,120	+		DZA65_RS11590	0.21	-0.6
2,474,121	-		DZA65_RS11590	0.21	-0.6
2,474,121	-		DZA65_RS11590	0.21	-1.6
2,474,172	+		DZA65_RS11590	0.27	-0.5
2,474,173	-		DZA65_RS11590	0.28	-0.4
2,474,173	-		DZA65_RS11590	0.28	-0.9
2,474,179	+		DZA65_RS11590	0.28	+0.2
2,474,180	-				-0.6
2,474,198	+		DZA65_RS11590	0.31	-1.2
2,474,199	-		DZA65_RS11590	0.31	-0.4
2,474,199	-		DZA65_RS11590	0.31	-2.4
2,474,199	-		DZA65_RS11590	0.31	-3.1
2,474,199	-		DZA65_RS11590	0.31	-2.0
2,474,199	-		DZA65_RS11590	0.31	-0.6
2,474,199	-		DZA65_RS11590	0.31	-0.1
2,474,201	-		DZA65_RS11590	0.31	-1.6
2,474,201	-		DZA65_RS11590	0.31	-0.3
2,474,201	-		DZA65_RS11590	0.31	-0.6
2,474,228	-		DZA65_RS11590	0.34	+0.8
2,474,348	+		DZA65_RS11590	0.49	+1.0
2,474,348	+		DZA65_RS11590	0.49	-2.2
2,474,349	-		DZA65_RS11590	0.49	-2.6
2,474,467	+		DZA65_RS11590	0.64	-2.1
2,474,495	+		DZA65_RS11590	0.67	-1.0
2,474,495	+				+0.4
2,474,496	-		DZA65_RS11590	0.67	+0.0
2,474,663	+		DZA65_RS11590	0.88	-0.4
2,474,663	+		DZA65_RS11590	0.88	-0.8
2,474,663	+		DZA65_RS11590	0.88	+0.6
2,474,664	-		DZA65_RS11590	0.88	-0.5
2,474,664	-		DZA65_RS11590	0.88	-1.6
2,475,000	+		DZA65_RS11595	0.83	-0.3
2,475,000	+		DZA65_RS11595	0.83	+1.7
2,475,000	+		DZA65_RS11595	0.83	-0.3
2,475,001	-		DZA65_RS11595	0.84	+0.4
2,475,044	+				-2.0
2,475,044	+				-1.6
2,475,044	+				-0.0
2,475,045	-				+2.7
2,475,045	-				-0.6
2,475,045	-				+0.6
2,475,124	-				-2.2
2,475,331	+		DZA65_RS11600	0.19	-0.8
2,475,331	+		DZA65_RS11600	0.19	-0.1
2,475,331	+		DZA65_RS11600	0.19	+0.9
2,475,331	+		DZA65_RS11600	0.19	+0.4
2,475,331	+		DZA65_RS11600	0.19	+0.8
2,475,331	+				-0.6
2,475,331	+		DZA65_RS11600	0.19	-0.6
2,475,332	-		DZA65_RS11600	0.19	+0.2
2,475,332	-		DZA65_RS11600	0.19	-1.0
2,475,332	-		DZA65_RS11600	0.19	+1.3
2,475,332	-		DZA65_RS11600	0.19	-0.2
2,475,332	-		DZA65_RS11600	0.19	-0.1
2,475,332	-		DZA65_RS11600	0.19	-0.0
2,475,332	-		DZA65_RS11600	0.19	+0.0
2,475,343	-		DZA65_RS11600	0.20	+1.0
2,475,562	+		DZA65_RS11600	0.39	+0.3
2,475,632	+		DZA65_RS11600	0.46	+0.5
2,475,632	+		DZA65_RS11600	0.46	+0.5
2,475,632	+				+1.5
2,475,632	+		DZA65_RS11600	0.46	+0.4
2,475,632	+		DZA65_RS11600	0.46	+0.1
2,475,633	-		DZA65_RS11600	0.46	-0.5
2,475,633	-		DZA65_RS11600	0.46	+0.5
2,475,633	-		DZA65_RS11600	0.46	-0.1
2,475,633	-		DZA65_RS11600	0.46	+1.5
2,475,768	+		DZA65_RS11600	0.58	+0.4
2,475,768	+		DZA65_RS11600	0.58	+3.6
2,475,768	+		DZA65_RS11600	0.58	-2.0
2,475,769	-		DZA65_RS11600	0.58	-0.2
2,475,769	-		DZA65_RS11600	0.58	+0.7
2,475,769	-		DZA65_RS11600	0.58	+0.7
2,475,769	-		DZA65_RS11600	0.58	-1.6
2,475,769	-		DZA65_RS11600	0.58	+0.0
2,475,769	-		DZA65_RS11600	0.58	+0.7
2,475,789	+		DZA65_RS11600	0.60	+1.5
2,475,847	+		DZA65_RS11600	0.65	-1.2
2,475,848	-		DZA65_RS11600	0.65	-1.2
2,475,848	-		DZA65_RS11600	0.65	+0.1
2,475,894	+		DZA65_RS11600	0.69	+0.1
2,475,895	-		DZA65_RS11600	0.69	+0.1
2,475,973	+		DZA65_RS11600	0.76	+0.5
2,476,101	+		DZA65_RS11600	0.88	+1.1
2,476,101	+		DZA65_RS11600	0.88	+1.0
2,476,101	+		DZA65_RS11600	0.88	-0.4
2,476,101	+		DZA65_RS11600	0.88	+0.2
2,476,101	+		DZA65_RS11600	0.88	-0.4
2,476,101	+		DZA65_RS11600	0.88	+0.4
2,476,101	+		DZA65_RS11600	0.88	+1.6
2,476,101	+		DZA65_RS11600	0.88	+1.0
2,476,102	-		DZA65_RS11600	0.88	-2.0
2,476,102	-		DZA65_RS11600	0.88	+0.2
2,476,102	-		DZA65_RS11600	0.88	-0.3
2,476,102	-		DZA65_RS11600	0.88	-0.4
2,476,102	-		DZA65_RS11600	0.88	+0.2
2,476,131	+				-1.0
2,476,131	+				+0.1
2,476,131	+				+0.0
2,476,131	+				+1.0
2,476,131	+				+1.4
2,476,131	+				+0.2
2,476,131	+				-0.0
2,476,131	+				+0.5
2,476,131	+				+0.6
2,476,131	+				+0.5
2,476,131	+				+0.8
2,476,131	+				+0.8
2,476,131	+				-0.0
2,476,131	+				+0.0
2,476,131	+				+3.2
2,476,132	-				-1.0
2,476,132	-				+2.0
2,476,132	-				+1.6
2,476,132	-				-0.0
2,476,132	-				+1.2
2,476,132	-				-0.1
2,476,132	-				+0.4
2,476,132	-				+0.4
2,476,132	-				-0.6
2,476,132	-				+0.3
2,476,132	-				+0.8
2,476,132	-				+0.1
2,476,132	-				-0.5
2,476,132	-				+0.2
2,476,136	-				+1.1
2,476,206	-				+0.4
2,476,219	+				+0.4
2,476,220	-				+0.3
2,476,222	+				+0.0
2,476,222	+				+0.2
2,476,223	-				+1.7
2,476,223	-				+1.4
2,476,233	+				+1.0
2,476,247	-				+0.2
2,476,352	+				-1.0
2,476,353	-				-0.9
2,476,353	-				+0.5
2,476,412	+				-0.6
2,476,425	+				-0.3
2,476,425	+				-0.4
2,476,425	+				+0.4
2,476,426	-				-0.4
2,476,596	-				-0.6
2,476,671	+		DZA65_RS11605	0.14	-1.0
2,476,715	-		DZA65_RS11605	0.16	+0.4
2,476,984	+		DZA65_RS11605	0.33	-1.8
2,476,984	+		DZA65_RS11605	0.33	-0.9
2,476,984	+		DZA65_RS11605	0.33	-2.0
2,476,984	+		DZA65_RS11605	0.33	-0.6
2,476,984	+		DZA65_RS11605	0.33	-0.4
2,476,985	-		DZA65_RS11605	0.33	+1.1
2,477,041	+				+0.0
2,477,041	+		DZA65_RS11605	0.36	-2.0
2,477,042	-		DZA65_RS11605	0.36	-1.6
2,477,225	+		DZA65_RS11605	0.47	-0.2
2,477,225	+		DZA65_RS11605	0.47	-0.5
2,477,226	-		DZA65_RS11605	0.47	-0.7