Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11375

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,418,599	+		DZA65_RS11370	0.33	-0.1
2,418,752	+		DZA65_RS11370	0.44	-0.4
2,418,753	-		DZA65_RS11370	0.44	+0.4
2,418,753	-		DZA65_RS11370	0.44	+0.2
2,418,753	-		DZA65_RS11370	0.44	-0.8
2,418,763	+		DZA65_RS11370	0.45	+0.1
2,418,763	+		DZA65_RS11370	0.45	-1.2
2,418,763	+		DZA65_RS11370	0.45	+1.4
2,418,763	+		DZA65_RS11370	0.45	-2.1
2,418,764	-		DZA65_RS11370	0.45	-1.0
2,418,862	+		DZA65_RS11370	0.52	-0.2
2,418,862	+		DZA65_RS11370	0.52	-0.6
2,418,862	+		DZA65_RS11370	0.52	-1.4
2,418,863	-		DZA65_RS11370	0.52	+0.8
2,418,981	+		DZA65_RS11370	0.60	-2.5
2,418,981	+		DZA65_RS11370	0.60	-1.1
2,418,981	+		DZA65_RS11370	0.60	+0.2
2,418,982	-		DZA65_RS11370	0.60	-0.0
2,419,003	-		DZA65_RS11370	0.62	+0.8
2,419,003	-		DZA65_RS11370	0.62	+1.1
2,419,050	-		DZA65_RS11370	0.65	-0.6
2,419,096	-		DZA65_RS11370	0.69	-0.6
2,419,175	+		DZA65_RS11370	0.74	-0.9
2,419,175	+				+0.4
2,419,175	+		DZA65_RS11370	0.74	-0.2
2,419,175	+		DZA65_RS11370	0.74	-1.1
2,419,175	+		DZA65_RS11370	0.74	-1.5
2,419,176	-		DZA65_RS11370	0.74	-0.3
2,419,316	-		DZA65_RS11370	0.84	-1.4
2,419,316	-		DZA65_RS11370	0.84	-0.2
2,419,503	-				+0.1
2,419,504	+				+0.2
2,419,504	+				-0.2
2,419,504	+				-0.0
2,419,504	+				-0.7
2,419,504	+				-0.1
2,419,505	-				-0.7
2,419,505	-				-0.6
2,419,505	-				+0.1
2,419,505	-				-0.9
2,419,505	-				+2.4
2,419,505	-				-0.6
2,419,505	-				+1.1
2,419,505	-				-1.0
2,419,505	-				+0.8
2,419,505	-				-1.1
2,419,505	-				-1.9
2,419,505	-				+1.2
2,419,505	-				-1.6
2,419,505	-				-2.0
2,419,505	-				-1.8
2,419,519	-				+0.7
2,419,544	+				-1.2
2,419,600	-				-0.6
2,419,642	+				+0.9
2,419,686	+				-0.2
2,419,687	-				-0.6
2,419,726	-		DZA65_RS11375	0.12	-1.2
2,419,757	+		DZA65_RS11375	0.14	-2.0
2,419,757	+		DZA65_RS11375	0.14	-0.8
2,419,757	+		DZA65_RS11375	0.14	-0.3
2,419,757	+		DZA65_RS11375	0.14	-0.4
2,419,758	-		DZA65_RS11375	0.14	+1.7
2,419,758	-		DZA65_RS11375	0.14	-0.3
2,419,758	-		DZA65_RS11375	0.14	-0.7
2,419,758	-		DZA65_RS11375	0.14	+0.4
2,419,758	-		DZA65_RS11375	0.14	-1.2
2,419,758	-		DZA65_RS11375	0.14	+0.1
2,419,761	-		DZA65_RS11375	0.14	-0.5
2,419,761	-		DZA65_RS11375	0.14	-0.3
2,419,848	+		DZA65_RS11375	0.20	-0.5
2,419,849	-		DZA65_RS11375	0.20	-0.1
2,419,849	-		DZA65_RS11375	0.20	+0.7
2,419,893	+		DZA65_RS11375	0.23	+0.0
2,419,893	+		DZA65_RS11375	0.23	-1.1
2,419,893	+		DZA65_RS11375	0.23	-1.0
2,419,894	-		DZA65_RS11375	0.23	-1.4
2,420,080	-		DZA65_RS11375	0.35	+0.0
2,420,096	+		DZA65_RS11375	0.36	+1.2
2,420,096	+		DZA65_RS11375	0.36	-0.6
2,420,097	-		DZA65_RS11375	0.36	+0.4
2,420,097	-		DZA65_RS11375	0.36	+0.5
2,420,097	-		DZA65_RS11375	0.36	-1.0
2,420,139	+		DZA65_RS11375	0.39	-0.2
2,420,142	-		DZA65_RS11375	0.39	-0.7
2,420,142	-		DZA65_RS11375	0.39	+0.6
2,420,253	+		DZA65_RS11375	0.46	-0.8
2,420,254	-		DZA65_RS11375	0.46	+0.7
2,420,322	+		DZA65_RS11375	0.51	-0.2
2,420,322	+		DZA65_RS11375	0.51	-0.5
2,420,323	-		DZA65_RS11375	0.51	-0.8
2,420,323	-		DZA65_RS11375	0.51	-1.0
2,420,326	-		DZA65_RS11375	0.51	+0.7
2,420,326	-		DZA65_RS11375	0.51	-0.3
2,420,373	+		DZA65_RS11375	0.54	-0.8
2,420,373	+		DZA65_RS11375	0.54	-1.1
2,420,373	+		DZA65_RS11375	0.54	-1.3
2,420,374	-		DZA65_RS11375	0.54	+0.5
2,420,400	-		DZA65_RS11375	0.56	-1.2
2,420,697	+		DZA65_RS11375	0.75	-0.0
2,420,698	-		DZA65_RS11375	0.75	+0.8
2,420,746	+		DZA65_RS11375	0.78	-0.6
2,420,808	+		DZA65_RS11375	0.83	+0.4
2,420,809	-		DZA65_RS11375	0.83	+1.2
2,420,927	+				+0.8
2,421,061	+				-0.0
2,421,108	+				+0.4
2,421,108	+				+0.9
2,421,109	-				-0.4
2,421,112	+				+0.4
2,421,112	+				-0.1
2,421,112	+				-1.5
2,421,112	+				-1.2
2,421,113	-				-0.7
2,421,118	-				+0.5
2,421,118	-				+0.1
2,421,175	+				+1.1
2,421,175	+				+1.4
2,421,175	+				-0.4
2,421,175	+				-2.5
2,421,175	+				-2.6
2,421,176	-				+0.6
2,421,176	-				+0.2
2,421,176	-				+0.0
2,421,186	-				+0.2
2,421,187	+				-0.0
2,421,192	+				-0.2
2,421,193	-				-1.0
2,421,193	-				+0.6
2,421,207	+				+0.4
2,421,208	-				+0.4
2,421,230	+				-1.4
2,421,231	-				+1.1
2,421,237	+				-0.2
2,421,268	+				+0.9
2,421,269	-				-0.6
2,421,272	+				-0.5
2,421,273	-				+0.4
2,421,312	+				-1.6
2,421,312	+				-0.5
2,421,313	-				-1.2
2,421,386	+				-0.3
2,421,397	+				-1.3
2,421,398	-				-1.2
2,421,400	-				-0.3
2,421,400	-				-0.3
2,421,414	+				+0.1
2,421,418	-				-0.4
2,421,449	+				+0.4
2,421,549	+				+0.7
2,421,549	+				+1.7
2,421,550	-				-0.6
2,421,550	-				-0.1
2,421,550	-				-0.1
2,421,550	-				-0.1
2,421,550	-				+0.0
2,421,550	-				-0.4
2,421,553	+				+0.8
2,421,553	+				+0.7
2,421,553	+				-0.4
2,421,553	+				+2.6
2,421,553	+				-1.0
2,421,553	+				+0.1
2,421,553	+				+0.4
2,421,553	+				-0.4
2,421,553	+				+0.8
2,421,553	+				+1.4
2,421,554	-				+0.4
2,421,554	-				+0.2
2,421,554	-				-0.1
2,421,554	-				+2.7
2,421,554	-				+0.4
2,421,554	-				+0.2
2,421,554	-				-1.1
2,421,554	-				+0.1
2,421,554	-				-0.1
2,421,558	-				-0.8
2,421,558	-				+0.1
2,421,563	-				-0.3
2,421,586	+				-0.6
2,421,586	+				+0.9
2,421,587	-				-1.6
2,421,624	+				-0.7
2,421,625	-				-0.0
2,421,625	-				+0.9
2,421,630	+				+0.8
2,421,630	+				-0.9
2,421,630	+				-1.6
2,421,631	-				-0.4
2,421,631	-				-0.9
2,421,704	-		DZA65_RS11380	0.12	+1.6
2,421,715	-		DZA65_RS11380	0.13	+1.4
2,421,734	+		DZA65_RS11380	0.15	+0.0
2,421,735	-		DZA65_RS11380	0.16	-1.2
2,421,791	+		DZA65_RS11380	0.21	+0.4
2,421,791	+		DZA65_RS11380	0.21	+3.2
2,421,791	+		DZA65_RS11380	0.21	+0.4
2,421,792	-		DZA65_RS11380	0.22	-1.6
2,421,792	-		DZA65_RS11380	0.22	-1.0
2,421,848	+		DZA65_RS11380	0.27	-1.6
2,421,853	+		DZA65_RS11380	0.28	+1.2
2,421,853	+		DZA65_RS11380	0.28	+0.4
2,421,853	+		DZA65_RS11380	0.28	+0.2
2,421,853	+		DZA65_RS11380	0.28	+0.1
2,421,853	+		DZA65_RS11380	0.28	+2.3
2,421,887	+		DZA65_RS11380	0.32	+0.6
2,421,888	-				-1.0
2,421,934	-		DZA65_RS11380	0.36	-1.2
2,421,948	-		DZA65_RS11380	0.38	-0.6
2,421,948	-		DZA65_RS11380	0.38	-1.5
2,421,971	+		DZA65_RS11380	0.40	+1.4
2,422,004	-		DZA65_RS11380	0.44	+0.2
2,422,004	-		DZA65_RS11380	0.44	-0.4
2,422,010	-		DZA65_RS11380	0.44	-0.2
2,422,035	-		DZA65_RS11380	0.47	-1.4
2,422,043	+		DZA65_RS11380	0.48	-1.5
2,422,043	+		DZA65_RS11380	0.48	-0.6
2,422,043	+		DZA65_RS11380	0.48	-0.8
2,422,044	-		DZA65_RS11380	0.48	-0.5