Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10610

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,250,244	+				-0.6
2,250,245	-				-1.0
2,250,329	+				-0.1
2,250,365	+				+0.3
2,250,366	-				-1.7
2,250,377	-				+1.6
2,250,387	+				+1.9
2,250,388	-				-0.3
2,250,434	+				-2.0
2,250,453	+				+0.3
2,250,453	+				+0.6
2,250,453	+				+1.7
2,250,453	+				+0.8
2,250,454	-				+0.7
2,250,454	-				+2.9
2,250,454	-				-1.1
2,250,457	+				+0.5
2,250,457	+				-0.7
2,250,457	+				-1.3
2,250,458	-				-0.3
2,250,458	-				+1.3
2,250,458	-				+0.3
2,250,472	-				+1.5
2,250,472	-				+0.0
2,250,531	+		DZA65_RS10600	0.34	-0.7
2,250,531	+		DZA65_RS10600	0.34	-0.7
2,250,531	+		DZA65_RS10600	0.34	-0.0
2,250,532	-		DZA65_RS10600	0.35	+0.3
2,250,591	+		DZA65_RS10600	0.60	-0.1
2,250,592	-		DZA65_RS10600	0.61	+0.3
2,250,592	-		DZA65_RS10600	0.61	-0.4
2,250,592	-		DZA65_RS10600	0.61	-0.2
2,250,592	-		DZA65_RS10600	0.61	+2.0
2,250,654	+		DZA65_RS10600	0.87	+1.7
2,250,654	+		DZA65_RS10600	0.87	-3.4
2,250,675	+				-0.1
2,250,675	+				-1.0
2,250,675	+				+1.6
2,250,676	-				-0.2
2,250,676	-				+0.9
2,250,708	-				-0.7
2,250,708	-				+1.2
2,250,782	+				+0.0
2,250,783	-				-0.3
2,250,903	+		DZA65_RS10605	0.15	-0.9
2,250,966	+		DZA65_RS10605	0.32	-0.3
2,251,032	+		DZA65_RS10605	0.49	-0.1
2,251,151	-		DZA65_RS10605	0.81	-1.5
2,251,204	+				-2.0
2,251,204	+				+0.2
2,251,205	-				+0.1
2,251,222	+				+0.6
2,251,222	+				+0.6
2,251,222	+				+0.3
2,251,223	-				+0.9
2,251,223	-				-1.0
2,251,246	+				-0.2
2,251,247	-				-0.1
2,251,281	+				-1.4
2,251,281	+				+1.8
2,251,281	+				-0.4
2,251,281	+				-1.2
2,251,281	+				-0.2
2,251,282	-				-0.9
2,251,282	-				+0.3
2,251,306	+				-1.1
2,251,306	+				+1.5
2,251,412	+		DZA65_RS10610	0.21	+0.4
2,251,412	+		DZA65_RS10610	0.21	-0.5
2,251,413	-		DZA65_RS10610	0.21	-0.1
2,251,413	-		DZA65_RS10610	0.21	-1.0
2,251,452	+		DZA65_RS10610	0.25	-1.5
2,251,453	-		DZA65_RS10610	0.25	+1.1
2,251,456	-		DZA65_RS10610	0.25	-1.7
2,251,619	+		DZA65_RS10610	0.44	-0.7
2,251,620	-		DZA65_RS10610	0.44	+0.9
2,251,628	+		DZA65_RS10610	0.45	-0.7
2,251,628	+		DZA65_RS10610	0.45	+0.7
2,251,682	+		DZA65_RS10610	0.51	-0.7
2,251,800	+		DZA65_RS10610	0.64	+0.2
2,251,829	-		DZA65_RS10610	0.67	+0.4
2,251,875	+		DZA65_RS10610	0.72	-1.0
2,251,876	-		DZA65_RS10610	0.72	-0.5
2,251,876	-		DZA65_RS10610	0.72	+0.4
2,251,876	-		DZA65_RS10610	0.72	-1.0
2,251,976	+		DZA65_RS10610	0.83	-0.5
2,251,976	+		DZA65_RS10610	0.83	+0.6
2,251,981	-		DZA65_RS10610	0.84	+0.0
2,252,015	+		DZA65_RS10610	0.88	-0.1
2,252,022	+		DZA65_RS10610	0.89	+1.3
2,252,023	-		DZA65_RS10610	0.89	-1.8
2,252,023	-		DZA65_RS10610	0.89	-0.5
2,252,024	+		DZA65_RS10610	0.89	-1.3
2,252,024	+		DZA65_RS10610	0.89	-1.0
2,252,024	+		DZA65_RS10610	0.89	-0.0
2,252,024	+		DZA65_RS10610	0.89	+1.1
2,252,024	+		DZA65_RS10610	0.89	-1.2
2,252,025	-		DZA65_RS10610	0.89	-1.2
2,252,025	-		DZA65_RS10610	0.89	-0.0
2,252,025	-		DZA65_RS10610	0.89	-0.7
2,252,025	-		DZA65_RS10610	0.89	-2.6
2,252,025	-		DZA65_RS10610	0.89	-0.9
2,252,025	-		DZA65_RS10610	0.89	-0.7
2,252,029	+		DZA65_RS10610	0.89	-0.2
2,252,029	+		DZA65_RS10610	0.89	-0.2
2,252,029	+		DZA65_RS10610	0.89	-0.7
2,252,030	-		DZA65_RS10610	0.89	-1.0
2,252,030	-		DZA65_RS10610	0.89	-0.5
2,252,030	-		DZA65_RS10610	0.89	+0.3
2,252,030	-		DZA65_RS10610	0.89	-0.2
2,252,030	-		DZA65_RS10610	0.89	-0.5
2,252,030	-		DZA65_RS10610	0.89	-1.0
2,252,070	-				-1.1
2,252,194	-				-0.1
2,252,261	+				+0.3
2,252,262	-				+1.1
2,252,320	+				-0.1
2,252,320	+				+1.9
2,252,320	+				-0.1
2,252,321	-				+0.3
2,252,321	-				-0.1
2,252,321	-				+1.1
2,252,321	-				-0.2
2,252,407	+				+0.3
2,252,407	+				+0.3
2,252,408	-				-1.1
2,252,408	-				+0.3
2,252,408	-				-1.2
2,252,408	-				+0.2
2,252,420	+		DZA65_RS10615	0.11	+1.1
2,252,435	+		DZA65_RS10615	0.14	-0.5
2,252,543	+		DZA65_RS10615	0.35	+0.1
2,252,732	+		DZA65_RS10615	0.72	-0.4
2,252,732	+		DZA65_RS10615	0.72	-0.7
2,252,732	+				+2.9
2,252,732	+		DZA65_RS10615	0.72	-1.5
2,252,732	+		DZA65_RS10615	0.72	-1.0
2,252,733	-		DZA65_RS10615	0.72	-0.5
2,252,733	-		DZA65_RS10615	0.72	-1.2
2,252,733	-		DZA65_RS10615	0.72	+2.7
2,252,733	-		DZA65_RS10615	0.72	-1.5
2,252,733	-		DZA65_RS10615	0.72	+1.1
2,252,733	-		DZA65_RS10615	0.72	+0.2
2,252,736	+		DZA65_RS10615	0.73	+3.3
2,252,736	+		DZA65_RS10615	0.73	-0.7
2,252,736	+		DZA65_RS10615	0.73	-1.5
2,252,737	-		DZA65_RS10615	0.73	-2.0
2,252,737	-		DZA65_RS10615	0.73	-0.6
2,252,737	-		DZA65_RS10615	0.73	-0.5
2,252,737	-		DZA65_RS10615	0.73	-0.4
2,252,773	+		DZA65_RS10615	0.80	-1.9
2,252,824	+		DZA65_RS10615	0.90	-0.5
2,252,913	+				+0.3
2,252,914	-				-0.7
2,252,920	-				+0.8
2,252,920	-				-0.5
2,252,945	+				-1.1
2,252,945	+				-0.3
2,252,949	+				+0.7
2,252,950	-				-0.3
2,252,950	-				-0.2
2,252,950	-				+0.5
2,252,950	-				-0.4
2,252,970	+				-0.1
2,252,975	+				-0.5
2,252,976	-				-0.7
2,252,977	+				-1.0
2,253,005	-				-0.7
2,253,005	-				-2.0
2,253,009	-				+1.0
2,253,018	-				-0.2
2,253,073	+				+0.2
2,253,120	+				+0.3