Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10430

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,209,343	+		DZA65_RS10425	0.75	+0.7
2,209,359	-		DZA65_RS10425	0.75	+0.7
2,209,376	+		DZA65_RS10425	0.75	+1.0
2,209,377	-		DZA65_RS10425	0.75	+0.3
2,209,377	-		DZA65_RS10425	0.75	-1.1
2,209,756	+		DZA65_RS10425	0.87	-0.0
2,209,756	+		DZA65_RS10425	0.87	+0.6
2,209,757	-		DZA65_RS10425	0.87	-1.6
2,209,757	-		DZA65_RS10425	0.87	+1.1
2,209,840	+		DZA65_RS10425	0.89	-0.4
2,209,841	-		DZA65_RS10425	0.89	+0.1
2,209,849	+		DZA65_RS10425	0.89	-0.8
2,209,849	+		DZA65_RS10425	0.89	-0.5
2,209,967	+				+0.6
2,209,967	+				-0.4
2,209,967	+				-0.6
2,209,968	-				+0.7
2,210,019	-				+0.1
2,210,155	+				-0.8
2,210,155	+				+0.9
2,210,155	+				-0.2
2,210,156	-				+0.8
2,210,194	+				-1.9
2,210,194	+				-0.0
2,210,194	+				-0.7
2,210,194	+				-0.4
2,210,194	+				+0.9
2,210,195	-				+0.8
2,210,195	-				+0.7
2,210,195	-				-0.6
2,210,195	-				+0.8
2,210,195	-				-1.2
2,210,224	+				-0.5
2,210,224	+				-0.5
2,210,224	+				+1.4
2,210,228	+				-0.4
2,210,229	-				-0.7
2,210,229	-				-0.0
2,210,276	+				+0.2
2,210,276	+				+1.4
2,210,277	-				+2.0
2,210,277	-				+2.1
2,210,277	-				-0.6
2,210,334	+				+0.1
2,210,334	+				+0.6
2,210,334	+				-0.3
2,210,334	+				+2.1
2,210,334	+				-0.0
2,210,335	-				+0.1
2,210,335	-				-1.2
2,210,336	+				-0.6
2,210,337	-				+0.5
2,210,367	+				-0.2
2,210,368	-				-1.2
2,210,368	-				-0.1
2,210,368	-				+0.6
2,210,368	-				+0.2
2,210,379	+				-0.4
2,210,379	+				+0.3
2,210,380	-				-0.0
2,210,388	+				+2.2
2,210,391	+				+1.2
2,210,392	-				-0.4
2,210,392	-				-1.0
2,210,465	+		DZA65_RS10430	0.11	-0.1
2,210,493	-		DZA65_RS10430	0.12	-0.1
2,210,733	+		DZA65_RS10430	0.26	-1.2
2,210,733	+		DZA65_RS10430	0.26	-0.9
2,210,734	-		DZA65_RS10430	0.26	+1.5
2,210,734	-		DZA65_RS10430	0.26	-1.4
2,210,734	-		DZA65_RS10430	0.26	+0.4
2,210,734	-		DZA65_RS10430	0.26	+0.1
2,210,915	+		DZA65_RS10430	0.36	+0.4
2,210,916	-		DZA65_RS10430	0.36	-0.5
2,210,964	-		DZA65_RS10430	0.39	-1.3
2,210,964	-		DZA65_RS10430	0.39	-0.6
2,211,053	+		DZA65_RS10430	0.44	-2.4
2,211,053	+		DZA65_RS10430	0.44	-0.0
2,211,053	+		DZA65_RS10430	0.44	-0.7
2,211,112	+		DZA65_RS10430	0.47	+1.0
2,211,112	+		DZA65_RS10430	0.47	+1.8
2,211,112	+		DZA65_RS10430	0.47	+0.5
2,211,112	+				+0.4
2,211,112	+		DZA65_RS10430	0.47	-0.8
2,211,113	-		DZA65_RS10430	0.47	-0.8
2,211,113	-		DZA65_RS10430	0.47	-0.4
2,211,182	+		DZA65_RS10430	0.51	-0.4
2,211,183	-		DZA65_RS10430	0.51	-0.0
2,211,183	-		DZA65_RS10430	0.51	+0.4
2,211,231	+		DZA65_RS10430	0.54	-0.1
2,211,231	+		DZA65_RS10430	0.54	-0.9
2,211,232	-		DZA65_RS10430	0.54	-0.9
2,211,232	-		DZA65_RS10430	0.54	-1.0
2,211,232	-		DZA65_RS10430	0.54	+0.3
2,211,270	+		DZA65_RS10430	0.56	+0.4
2,211,284	+		DZA65_RS10430	0.57	-2.1
2,211,284	+		DZA65_RS10430	0.57	-0.9
2,211,284	+		DZA65_RS10430	0.57	-0.4
2,211,284	+		DZA65_RS10430	0.57	-1.9
2,211,284	+		DZA65_RS10430	0.57	-1.2
2,211,284	+		DZA65_RS10430	0.57	+0.5
2,211,284	+		DZA65_RS10430	0.57	-0.9
2,211,284	+		DZA65_RS10430	0.57	-0.1
2,211,284	+		DZA65_RS10430	0.57	-0.0
2,211,285	-		DZA65_RS10430	0.57	-0.2
2,211,285	-		DZA65_RS10430	0.57	+1.7
2,211,285	-		DZA65_RS10430	0.57	-0.9
2,211,285	-		DZA65_RS10430	0.57	+1.4
2,211,285	-		DZA65_RS10430	0.57	-1.2
2,211,285	-		DZA65_RS10430	0.57	-0.9
2,211,285	-		DZA65_RS10430	0.57	-1.6
2,211,285	-		DZA65_RS10430	0.57	-0.2
2,211,285	-		DZA65_RS10430	0.57	-1.4
2,211,285	-		DZA65_RS10430	0.57	-1.5
2,211,285	-		DZA65_RS10430	0.57	-0.5
2,211,285	-		DZA65_RS10430	0.57	-1.9
2,211,285	-		DZA65_RS10430	0.57	-0.7
2,211,285	-		DZA65_RS10430	0.57	-1.6
2,211,285	-		DZA65_RS10430	0.57	+0.4
2,211,285	-		DZA65_RS10430	0.57	+2.0
2,211,305	+		DZA65_RS10430	0.58	+0.9
2,211,306	-		DZA65_RS10430	0.58	+0.3
2,211,306	-		DZA65_RS10430	0.58	-1.2
2,211,351	+		DZA65_RS10430	0.61	+0.4
2,211,360	+		DZA65_RS10430	0.61	-0.3
2,211,360	+		DZA65_RS10430	0.61	+0.8
2,211,366	+		DZA65_RS10430	0.62	-0.9
2,211,367	-		DZA65_RS10430	0.62	+0.6
2,211,367	-		DZA65_RS10430	0.62	-1.5
2,211,367	-		DZA65_RS10430	0.62	-1.2
2,211,396	+		DZA65_RS10430	0.64	-0.6
2,211,397	-		DZA65_RS10430	0.64	-0.8
2,211,397	-		DZA65_RS10430	0.64	-0.3
2,211,416	+		DZA65_RS10430	0.65	+0.5
2,211,513	-		DZA65_RS10430	0.70	+0.2
2,211,513	-		DZA65_RS10430	0.70	+0.4
2,211,515	+		DZA65_RS10430	0.70	-1.4
2,211,515	+		DZA65_RS10430	0.70	-0.2
2,211,516	-		DZA65_RS10430	0.70	+0.6
2,211,516	-		DZA65_RS10430	0.70	-0.7
2,211,516	-		DZA65_RS10430	0.70	+0.5
2,211,530	+		DZA65_RS10430	0.71	-1.2
2,211,530	+		DZA65_RS10430	0.71	+0.4
2,211,530	+		DZA65_RS10430	0.71	-1.2
2,211,530	+		DZA65_RS10430	0.71	-0.2
2,211,531	-		DZA65_RS10430	0.71	-0.6
2,211,531	-		DZA65_RS10430	0.71	-1.6
2,211,531	-		DZA65_RS10430	0.71	-1.8
2,211,648	+		DZA65_RS10430	0.78	+0.4
2,211,649	-		DZA65_RS10430	0.78	-0.4
2,211,690	+		DZA65_RS10430	0.80	+1.4
2,211,690	+		DZA65_RS10430	0.80	+0.5
2,211,703	-		DZA65_RS10430	0.81	+0.5
2,211,707	+		DZA65_RS10430	0.81	-0.8
2,211,707	+		DZA65_RS10430	0.81	-0.2
2,211,708	-		DZA65_RS10430	0.81	-1.6
2,211,708	-		DZA65_RS10430	0.81	-0.1
2,211,708	-		DZA65_RS10430	0.81	-0.5
2,211,708	-		DZA65_RS10430	0.81	+0.2
2,211,799	+		DZA65_RS10430	0.86	-3.6
2,211,810	+		DZA65_RS10430	0.87	+3.0
2,211,810	+		DZA65_RS10430	0.87	+0.7
2,211,810	+		DZA65_RS10430	0.87	+0.1
2,211,810	+		DZA65_RS10430	0.87	+0.3
2,211,810	+		DZA65_RS10430	0.87	+0.8
2,211,810	+		DZA65_RS10430	0.87	+1.4
2,211,810	+		DZA65_RS10430	0.87	-0.6
2,211,810	+		DZA65_RS10430	0.87	-1.4
2,211,810	+		DZA65_RS10430	0.87	-0.5
2,211,810	+		DZA65_RS10430	0.87	-0.6
2,211,810	+		DZA65_RS10430	0.87	-2.2
2,211,810	+		DZA65_RS10430	0.87	+0.7
2,211,810	+		DZA65_RS10430	0.87	+0.4
2,211,810	+		DZA65_RS10430	0.87	+0.4
2,211,810	+		DZA65_RS10430	0.87	-0.4
2,211,810	+		DZA65_RS10430	0.87	+1.0
2,211,810	+		DZA65_RS10430	0.87	-0.1
2,211,811	-		DZA65_RS10430	0.87	+1.1
2,211,811	-		DZA65_RS10430	0.87	-0.1
2,211,811	-		DZA65_RS10430	0.87	+0.7
2,211,811	-		DZA65_RS10430	0.87	-0.6
2,211,811	-		DZA65_RS10430	0.87	+0.1
2,211,811	-		DZA65_RS10430	0.87	+0.8
2,211,811	-		DZA65_RS10430	0.87	-0.2
2,211,811	-		DZA65_RS10430	0.87	+1.1
2,211,811	-		DZA65_RS10430	0.87	-0.0
2,211,811	-		DZA65_RS10430	0.87	+0.7
2,211,811	-		DZA65_RS10430	0.87	+1.4
2,211,811	-		DZA65_RS10430	0.87	-1.3
2,211,811	-		DZA65_RS10430	0.87	-0.1
2,211,811	-		DZA65_RS10430	0.87	-2.6
2,211,811	-		DZA65_RS10430	0.87	+1.4
2,211,813	+		DZA65_RS10430	0.87	-2.2
2,211,813	+		DZA65_RS10430	0.87	+0.6
2,211,813	+		DZA65_RS10430	0.87	+0.4
2,211,814	-		DZA65_RS10430	0.87	-0.1
2,211,814	-		DZA65_RS10430	0.87	+0.3
2,211,864	+				-1.2
2,211,865	-				+0.1
2,211,875	+				-1.6
2,211,875	+				+0.9
2,211,876	-				+1.4
2,211,876	-				-0.0
2,211,907	+				+0.1
2,211,984	-				+0.7
2,212,035	+				-0.7
2,212,035	+				-0.6
2,212,036	-				+0.0
2,212,138	+				-0.3
2,212,193	-		DZA65_RS10435	0.12	-0.1
2,212,193	-		DZA65_RS10435	0.12	+0.5
2,212,193	-		DZA65_RS10435	0.12	-0.0
2,212,338	+		DZA65_RS10435	0.25	-1.3
2,212,338	+		DZA65_RS10435	0.25	-2.1
2,212,339	-		DZA65_RS10435	0.25	+0.6
2,212,343	+		DZA65_RS10435	0.25	-0.4
2,212,343	+		DZA65_RS10435	0.25	-1.2
2,212,343	+		DZA65_RS10435	0.25	+1.5
2,212,450	-		DZA65_RS10435	0.35	-1.1
2,212,546	+		DZA65_RS10435	0.43	+0.4
2,212,546	+		DZA65_RS10435	0.43	-1.6
2,212,546	+		DZA65_RS10435	0.43	+0.4
2,212,546	+		DZA65_RS10435	0.43	+1.3
2,212,546	+		DZA65_RS10435	0.43	-0.4
2,212,547	-		DZA65_RS10435	0.43	+2.2
2,212,547	-		DZA65_RS10435	0.43	+1.0
2,212,547	-		DZA65_RS10435	0.43	-0.4
2,212,686	+		DZA65_RS10435	0.55	-0.9
2,212,780	+		DZA65_RS10435	0.64	-0.0
2,212,956	+		DZA65_RS10435	0.79	+2.0
2,212,960	+		DZA65_RS10435	0.79	-1.6
2,212,960	+		DZA65_RS10435	0.79	-0.3
2,212,960	+		DZA65_RS10435	0.79	-0.0
2,212,960	+		DZA65_RS10435	0.79	+1.3
2,212,960	+		DZA65_RS10435	0.79	-0.0
2,212,960	+		DZA65_RS10435	0.79	+0.8
2,212,960	+		DZA65_RS10435	0.79	-1.2
2,212,960	+		DZA65_RS10435	0.79	+0.3
2,212,960	+		DZA65_RS10435	0.79	+0.4
2,212,960	+		DZA65_RS10435	0.79	+1.0
2,212,960	+		DZA65_RS10435	0.79	+1.0
2,212,961	-		DZA65_RS10435	0.80	+0.2
2,212,961	-		DZA65_RS10435	0.80	-0.1
2,212,961	-		DZA65_RS10435	0.80	-1.4
2,212,961	-		DZA65_RS10435	0.80	-0.2
2,212,961	-		DZA65_RS10435	0.80	+0.8
2,212,961	-		DZA65_RS10435	0.80	+0.1
2,212,961	-		DZA65_RS10435	0.80	+0.5
2,212,961	-		DZA65_RS10435	0.80	-0.0
2,212,961	-		DZA65_RS10435	0.80	+1.4
2,212,961	-		DZA65_RS10435	0.80	+0.6
2,212,961	-		DZA65_RS10435	0.80	+0.4
2,212,963	-		DZA65_RS10435	0.80	-1.2