Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10115

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,140,718	+				+1.0
2,140,718	+				-0.6
2,140,719	-				-0.4
2,140,719	-				+1.4
2,140,719	-				+0.4
2,140,719	-				-0.8
2,140,756	-				+0.1
2,140,756	-				-0.5
2,140,756	-				-0.8
2,140,756	-				-0.3
2,140,803	+				-1.3
2,140,804	-				+2.0
2,140,804	-				-0.0
2,140,808	-				-1.2
2,140,808	-				-1.6
2,140,867	-		DZA65_RS10110	0.16	+0.3
2,140,883	+		DZA65_RS10110	0.18	+1.3
2,140,883	+		DZA65_RS10110	0.18	-0.3
2,140,883	+		DZA65_RS10110	0.18	-0.2
2,140,883	+		DZA65_RS10110	0.18	+0.0
2,140,883	+		DZA65_RS10110	0.18	-0.8
2,140,884	-		DZA65_RS10110	0.18	+0.0
2,140,884	-		DZA65_RS10110	0.18	-1.0
2,140,886	-		DZA65_RS10110	0.19	-2.4
2,140,886	-		DZA65_RS10110	0.19	-0.3
2,140,886	-		DZA65_RS10110	0.19	-2.1
2,140,909	+		DZA65_RS10110	0.21	-1.0
2,140,909	+		DZA65_RS10110	0.21	+2.0
2,140,910	-				-0.2
2,140,910	-		DZA65_RS10110	0.21	-3.3
2,141,048	+		DZA65_RS10110	0.37	+1.6
2,141,049	-		DZA65_RS10110	0.37	-0.6
2,141,175	+		DZA65_RS10110	0.51	-2.6
2,141,175	+		DZA65_RS10110	0.51	-0.6
2,141,175	+		DZA65_RS10110	0.51	-0.4
2,141,176	-		DZA65_RS10110	0.51	-0.2
2,141,176	-		DZA65_RS10110	0.51	-1.6
2,141,176	-		DZA65_RS10110	0.51	-2.4
2,141,176	-		DZA65_RS10110	0.51	-0.1
2,141,176	-		DZA65_RS10110	0.51	-0.2
2,141,176	-		DZA65_RS10110	0.51	-0.0
2,141,176	-		DZA65_RS10110	0.51	-1.2
2,141,176	-		DZA65_RS10110	0.51	-1.9
2,141,176	-		DZA65_RS10110	0.51	+0.0
2,141,206	+		DZA65_RS10110	0.55	-1.6
2,141,206	+		DZA65_RS10110	0.55	-0.4
2,141,206	+		DZA65_RS10110	0.55	-0.0
2,141,206	+		DZA65_RS10110	0.55	+0.1
2,141,206	+		DZA65_RS10110	0.55	-0.3
2,141,207	-		DZA65_RS10110	0.55	-0.3
2,141,207	-		DZA65_RS10110	0.55	-0.2
2,141,254	+		DZA65_RS10110	0.60	+0.6
2,141,255	-		DZA65_RS10110	0.60	-1.3
2,141,255	-		DZA65_RS10110	0.60	-0.8
2,141,317	+		DZA65_RS10110	0.67	-1.6
2,141,317	+		DZA65_RS10110	0.67	-1.6
2,141,317	+		DZA65_RS10110	0.67	-1.0
2,141,317	+		DZA65_RS10110	0.67	-0.9
2,141,318	-		DZA65_RS10110	0.67	-0.3
2,141,435	-		DZA65_RS10110	0.80	-1.9
2,141,461	+		DZA65_RS10110	0.83	-0.0
2,141,462	-		DZA65_RS10110	0.83	-0.7
2,141,462	-		DZA65_RS10110	0.83	-2.2
2,141,623	+				+0.4
2,141,638	+				+0.2
2,141,638	+				-1.5
2,141,639	-				+0.9
2,141,639	-				+0.9
2,141,639	-				-0.9
2,141,639	-				-0.2
2,141,639	-				+0.5
2,141,703	+				-0.3
2,141,704	-				-0.6
2,141,704	-				+0.7
2,141,709	+				-0.6
2,141,709	+				+0.1
2,141,919	+		DZA65_RS10115	0.14	-0.3
2,142,043	+		DZA65_RS10115	0.23	-0.8
2,142,043	+		DZA65_RS10115	0.23	-0.4
2,142,043	+		DZA65_RS10115	0.23	-0.2
2,142,044	-		DZA65_RS10115	0.23	-0.1
2,142,044	-		DZA65_RS10115	0.23	+0.5
2,142,044	-		DZA65_RS10115	0.23	-0.3
2,142,044	-		DZA65_RS10115	0.23	-1.9
2,142,045	+		DZA65_RS10115	0.23	+0.4
2,142,046	-		DZA65_RS10115	0.23	-2.1
2,142,274	+		DZA65_RS10115	0.38	+0.4
2,142,275	-		DZA65_RS10115	0.38	-1.2
2,142,275	-		DZA65_RS10115	0.38	-0.2
2,142,275	-		DZA65_RS10115	0.38	-0.1
2,142,275	-		DZA65_RS10115	0.38	-0.6
2,142,485	-		DZA65_RS10115	0.51	-0.2
2,142,562	-		DZA65_RS10115	0.56	-0.4
2,142,562	-		DZA65_RS10115	0.56	+0.0
2,142,736	+		DZA65_RS10115	0.68	-0.4
2,142,736	+		DZA65_RS10115	0.68	-1.9
2,142,737	-		DZA65_RS10115	0.68	-1.5
2,142,737	-		DZA65_RS10115	0.68	-2.3
2,142,820	-				+0.4
2,142,995	+		DZA65_RS10115	0.85	-1.6
2,142,995	+		DZA65_RS10115	0.85	-2.1
2,142,996	-		DZA65_RS10115	0.85	-0.8
2,143,096	+				+0.0
2,143,096	+				-3.2
2,143,210	-				-1.4
2,143,210	-				-0.0
2,143,234	+				-0.8
2,143,234	+				+0.4
2,143,234	+				+0.4
2,143,235	-				-0.7
2,143,235	-				-0.1
2,143,547	+		DZA65_RS10120	0.58	-2.8
2,143,547	+		DZA65_RS10120	0.58	-0.7
2,143,547	+		DZA65_RS10120	0.58	-0.6
2,143,548	-		DZA65_RS10120	0.59	+1.4
2,143,548	-		DZA65_RS10120	0.59	+0.4
2,143,655	+		DZA65_RS10120	0.79	+0.4
2,143,655	+		DZA65_RS10120	0.79	-0.9
2,143,655	+		DZA65_RS10120	0.79	-0.3
2,143,656	-		DZA65_RS10120	0.79	-0.2
2,143,656	-		DZA65_RS10120	0.79	+0.0
2,143,656	-		DZA65_RS10120	0.79	-0.4
2,143,656	-		DZA65_RS10120	0.79	-1.7
2,143,656	-		DZA65_RS10120	0.79	+0.0
2,143,656	-		DZA65_RS10120	0.79	-0.6
2,143,656	-		DZA65_RS10120	0.79	+0.4
2,143,656	-		DZA65_RS10120	0.79	-0.6
2,143,656	-		DZA65_RS10120	0.79	-0.6
2,143,657	+		DZA65_RS10120	0.79	-2.4
2,143,657	+		DZA65_RS10120	0.79	-0.0
2,143,657	+		DZA65_RS10120	0.79	-1.0
2,143,657	+		DZA65_RS10120	0.79	-0.6
2,143,657	+		DZA65_RS10120	0.79	-1.9
2,143,657	+		DZA65_RS10120	0.79	-1.2
2,143,658	-		DZA65_RS10120	0.79	-0.8
2,143,736	+				+0.3
2,143,736	+				+2.7
2,143,737	-				-1.7
2,143,737	-				-1.0
2,143,737	-				-1.4
2,143,754	+				-0.7
2,143,755	-				-1.8
2,143,799	+				-0.5
2,143,799	+				+0.4
2,143,799	+				-1.2
2,143,799	+				-0.2
2,143,877	+		DZA65_RS10125	0.15	-1.0
2,143,878	-		DZA65_RS10125	0.15	+1.4
2,143,878	-		DZA65_RS10125	0.15	-0.5
2,143,878	-		DZA65_RS10125	0.15	+0.4
2,143,878	-		DZA65_RS10125	0.15	-0.3
2,143,878	-		DZA65_RS10125	0.15	-2.8
2,143,914	+		DZA65_RS10125	0.19	-0.2
2,143,943	+		DZA65_RS10125	0.22	+1.8
2,143,943	+		DZA65_RS10125	0.22	-0.2
2,143,944	-		DZA65_RS10125	0.22	+1.7
2,143,944	-		DZA65_RS10125	0.22	+0.7
2,143,944	-		DZA65_RS10125	0.22	-0.2
2,144,052	-		DZA65_RS10125	0.34	+3.4
2,144,105	+		DZA65_RS10125	0.40	-0.3
2,144,106	-		DZA65_RS10125	0.40	-0.1
2,144,109	+		DZA65_RS10125	0.40	+1.7
2,144,115	+		DZA65_RS10125	0.41	-0.7