Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09800

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,065,616	+		DZA65_RS09795	0.15	-1.0
2,065,616	+		DZA65_RS09795	0.15	-0.2
2,065,616	+		DZA65_RS09795	0.15	-0.2
2,065,616	+		DZA65_RS09795	0.15	-0.5
2,065,617	-		DZA65_RS09795	0.15	-0.4
2,065,617	-		DZA65_RS09795	0.15	+0.4
2,065,727	+		DZA65_RS09795	0.24	+1.4
2,065,727	+		DZA65_RS09795	0.24	-0.5
2,065,727	+		DZA65_RS09795	0.24	-0.8
2,065,727	+		DZA65_RS09795	0.24	+0.8
2,065,728	-				+2.6
2,065,743	+		DZA65_RS09795	0.26	-0.1
2,065,743	+		DZA65_RS09795	0.26	-0.6
2,065,744	-		DZA65_RS09795	0.26	+1.0
2,065,856	-		DZA65_RS09795	0.36	+0.7
2,066,007	-		DZA65_RS09795	0.49	-0.3
2,066,007	-		DZA65_RS09795	0.49	-0.0
2,066,042	-		DZA65_RS09795	0.52	-2.2
2,066,157	+		DZA65_RS09795	0.62	-1.6
2,066,157	+		DZA65_RS09795	0.62	-0.5
2,066,157	+		DZA65_RS09795	0.62	-0.3
2,066,158	-		DZA65_RS09795	0.63	+1.2
2,066,158	-		DZA65_RS09795	0.63	+0.2
2,066,158	-		DZA65_RS09795	0.63	+1.0
2,066,207	+		DZA65_RS09795	0.67	-2.2
2,066,207	+		DZA65_RS09795	0.67	+0.6
2,066,207	+		DZA65_RS09795	0.67	+1.1
2,066,207	+		DZA65_RS09795	0.67	+0.3
2,066,207	+		DZA65_RS09795	0.67	+0.1
2,066,299	+		DZA65_RS09795	0.75	-0.1
2,066,299	+		DZA65_RS09795	0.75	+0.1
2,066,299	+		DZA65_RS09795	0.75	-0.3
2,066,300	-		DZA65_RS09795	0.75	+0.8
2,066,300	-		DZA65_RS09795	0.75	+2.9
2,066,325	+		DZA65_RS09795	0.77	-0.3
2,066,325	+		DZA65_RS09795	0.77	+0.3
2,066,325	+		DZA65_RS09795	0.77	+0.1
2,066,325	+		DZA65_RS09795	0.77	-0.1
2,066,325	+		DZA65_RS09795	0.77	-0.2
2,066,325	+		DZA65_RS09795	0.77	-0.1
2,066,325	+		DZA65_RS09795	0.77	-1.2
2,066,326	-		DZA65_RS09795	0.77	-0.3
2,066,326	-		DZA65_RS09795	0.77	-0.8
2,066,407	+		DZA65_RS09795	0.85	+0.4
2,066,407	+		DZA65_RS09795	0.85	-0.6
2,066,407	+		DZA65_RS09795	0.85	-0.3
2,066,407	+		DZA65_RS09795	0.85	-0.5
2,066,407	+		DZA65_RS09795	0.85	-0.6
2,066,408	-		DZA65_RS09795	0.85	-0.0
2,066,418	+		DZA65_RS09795	0.86	-0.1
2,066,419	-		DZA65_RS09795	0.86	-0.6
2,066,435	+		DZA65_RS09795	0.87	-0.6
2,066,439	+		DZA65_RS09795	0.88	+0.7
2,066,439	+		DZA65_RS09795	0.88	+1.3
2,066,439	+		DZA65_RS09795	0.88	-0.2
2,066,439	+		DZA65_RS09795	0.88	+1.4
2,066,439	+		DZA65_RS09795	0.88	+1.4
2,066,439	+		DZA65_RS09795	0.88	+0.7
2,066,439	+		DZA65_RS09795	0.88	+1.1
2,066,440	-		DZA65_RS09795	0.88	-0.8
2,066,440	-		DZA65_RS09795	0.88	-1.8
2,066,440	-		DZA65_RS09795	0.88	-0.7
2,066,440	-		DZA65_RS09795	0.88	-0.7
2,066,440	-		DZA65_RS09795	0.88	+0.7
2,066,440	-		DZA65_RS09795	0.88	-1.4
2,066,440	-		DZA65_RS09795	0.88	-0.4
2,066,605	-				-1.3
2,066,708	+		DZA65_RS09800	0.12	-0.4
2,066,709	-		DZA65_RS09800	0.12	-0.2
2,066,709	-		DZA65_RS09800	0.12	-0.7
2,066,718	+		DZA65_RS09800	0.13	-1.9
2,066,732	-		DZA65_RS09800	0.14	+0.4
2,066,732	-		DZA65_RS09800	0.14	+0.6
2,066,795	+		DZA65_RS09800	0.21	+0.1
2,066,795	+		DZA65_RS09800	0.21	+1.4
2,066,855	+		DZA65_RS09800	0.27	+1.6
2,066,855	+		DZA65_RS09800	0.27	-1.5
2,066,855	+		DZA65_RS09800	0.27	+0.0
2,066,855	+		DZA65_RS09800	0.27	-0.7
2,066,856	-		DZA65_RS09800	0.27	-0.3
2,066,856	-		DZA65_RS09800	0.27	+0.4
2,066,856	-		DZA65_RS09800	0.27	-0.6
2,066,882	+		DZA65_RS09800	0.30	+0.6
2,066,882	+		DZA65_RS09800	0.30	-1.6
2,066,883	-		DZA65_RS09800	0.30	+1.8
2,066,883	-		DZA65_RS09800	0.30	-0.9
2,066,883	-		DZA65_RS09800	0.30	-0.2
2,066,883	-		DZA65_RS09800	0.30	+0.4
2,066,883	-		DZA65_RS09800	0.30	+1.3
2,066,884	+		DZA65_RS09800	0.30	-1.0
2,066,926	+		DZA65_RS09800	0.35	-0.6
2,066,927	-		DZA65_RS09800	0.35	+0.2
2,067,145	+		DZA65_RS09800	0.57	-0.4
2,067,159	+		DZA65_RS09800	0.59	+1.5
2,067,160	-		DZA65_RS09800	0.59	-0.4
2,067,160	-		DZA65_RS09800	0.59	-0.3
2,067,161	+		DZA65_RS09800	0.59	+0.9
2,067,161	+		DZA65_RS09800	0.59	-0.6
2,067,161	+		DZA65_RS09800	0.59	-0.2
2,067,161	+		DZA65_RS09800	0.59	-0.6
2,067,161	+		DZA65_RS09800	0.59	-0.1
2,067,161	+		DZA65_RS09800	0.59	-1.2
2,067,161	+		DZA65_RS09800	0.59	+0.9
2,067,161	+		DZA65_RS09800	0.59	+1.2
2,067,161	+		DZA65_RS09800	0.59	-1.8
2,067,161	+		DZA65_RS09800	0.59	-0.8
2,067,161	+		DZA65_RS09800	0.59	+0.4
2,067,161	+		DZA65_RS09800	0.59	+1.0
2,067,161	+		DZA65_RS09800	0.59	+0.1
2,067,161	+		DZA65_RS09800	0.59	+1.4
2,067,162	-		DZA65_RS09800	0.59	-1.0
2,067,162	-		DZA65_RS09800	0.59	-0.0
2,067,162	-		DZA65_RS09800	0.59	+0.6
2,067,162	-		DZA65_RS09800	0.59	+1.3
2,067,162	-		DZA65_RS09800	0.59	-1.0
2,067,162	-		DZA65_RS09800	0.59	-0.0
2,067,162	-		DZA65_RS09800	0.59	-0.9
2,067,162	-		DZA65_RS09800	0.59	-0.0
2,067,162	-		DZA65_RS09800	0.59	-0.6
2,067,162	-		DZA65_RS09800	0.59	+0.7
2,067,162	-		DZA65_RS09800	0.59	+0.0
2,067,162	-		DZA65_RS09800	0.59	-1.2
2,067,162	-		DZA65_RS09800	0.59	-0.0
2,067,162	-		DZA65_RS09800	0.59	-0.8
2,067,162	-		DZA65_RS09800	0.59	-0.6
2,067,162	-		DZA65_RS09800	0.59	+1.1
2,067,162	-		DZA65_RS09800	0.59	-0.2
2,067,162	-		DZA65_RS09800	0.59	-0.3
2,067,163	+		DZA65_RS09800	0.59	-0.2
2,067,163	+		DZA65_RS09800	0.59	-2.4
2,067,163	+		DZA65_RS09800	0.59	+0.2
2,067,163	+		DZA65_RS09800	0.59	-1.5
2,067,164	-		DZA65_RS09800	0.59	+2.7
2,067,164	-		DZA65_RS09800	0.59	+1.0
2,067,164	-		DZA65_RS09800	0.59	-0.0
2,067,176	+		DZA65_RS09800	0.61	+0.1
2,067,176	+		DZA65_RS09800	0.61	+0.1
2,067,176	+		DZA65_RS09800	0.61	+1.6
2,067,177	-		DZA65_RS09800	0.61	+0.2
2,067,177	-		DZA65_RS09800	0.61	-0.3
2,067,182	+		DZA65_RS09800	0.61	-0.9
2,067,182	+		DZA65_RS09800	0.61	-0.6
2,067,209	+		DZA65_RS09800	0.64	+1.1
2,067,209	+		DZA65_RS09800	0.64	-0.8
2,067,210	-		DZA65_RS09800	0.64	-2.2
2,067,300	+		DZA65_RS09800	0.74	+0.8
2,067,300	+		DZA65_RS09800	0.74	-1.5
2,067,301	-		DZA65_RS09800	0.74	-1.6
2,067,301	-		DZA65_RS09800	0.74	+0.2
2,067,347	-		DZA65_RS09800	0.78	-0.0
2,067,347	-		DZA65_RS09800	0.78	-0.2
2,067,365	+		DZA65_RS09800	0.80	-1.2
2,067,366	-		DZA65_RS09800	0.80	+0.1
2,067,366	-		DZA65_RS09800	0.80	-1.3
2,067,403	+		DZA65_RS09800	0.84	+0.1
2,067,403	+		DZA65_RS09800	0.84	+0.7
2,067,403	+		DZA65_RS09800	0.84	-0.3
2,067,403	+		DZA65_RS09800	0.84	+0.9
2,067,403	+		DZA65_RS09800	0.84	+0.9
2,067,403	+		DZA65_RS09800	0.84	+0.8
2,067,403	+		DZA65_RS09800	0.84	+1.2
2,067,403	+		DZA65_RS09800	0.84	-0.9
2,067,404	-		DZA65_RS09800	0.84	-0.6
2,067,404	-		DZA65_RS09800	0.84	-0.8
2,067,404	-		DZA65_RS09800	0.84	+1.1
2,067,404	-		DZA65_RS09800	0.84	-1.6
2,067,404	-		DZA65_RS09800	0.84	+1.2
2,067,404	-		DZA65_RS09800	0.84	+0.1
2,067,404	-		DZA65_RS09800	0.84	+0.2
2,067,483	+				+0.1
2,067,483	+				-0.6
2,067,483	+				-0.4
2,067,483	+				-0.0
2,067,483	+				+0.9
2,067,483	+				-0.1
2,067,484	-				-1.8
2,067,484	-				-0.2
2,067,518	-				+1.2
2,067,518	-				+0.7
2,067,530	-				+1.9
2,067,646	+		DZA65_RS09805	0.11	-0.2
2,067,647	-		DZA65_RS09805	0.11	+0.9
2,067,815	+		DZA65_RS09805	0.31	-0.4
2,067,975	+		DZA65_RS09805	0.50	+1.4
2,067,975	+		DZA65_RS09805	0.50	-1.6
2,067,975	+		DZA65_RS09805	0.50	+0.8
2,067,976	-		DZA65_RS09805	0.50	-1.9
2,068,009	+		DZA65_RS09805	0.54	-1.0
2,068,009	+		DZA65_RS09805	0.54	+0.1
2,068,009	+		DZA65_RS09805	0.54	+0.1
2,068,009	+		DZA65_RS09805	0.54	-2.6
2,068,010	-		DZA65_RS09805	0.54	+0.1
2,068,010	-		DZA65_RS09805	0.54	+1.8
2,068,010	-		DZA65_RS09805	0.54	+1.8
2,068,010	-		DZA65_RS09805	0.54	+1.1
2,068,010	-		DZA65_RS09805	0.54	+0.4
2,068,010	-		DZA65_RS09805	0.54	+0.7
2,068,128	-		DZA65_RS09805	0.68	-0.9
2,068,164	+		DZA65_RS09805	0.73	-0.8
2,068,164	+		DZA65_RS09805	0.73	+0.4
2,068,165	-		DZA65_RS09805	0.73	+0.2
2,068,250	+		DZA65_RS09805	0.83	-1.0
2,068,250	+		DZA65_RS09805	0.83	-0.4
2,068,250	+		DZA65_RS09805	0.83	-1.6
2,068,250	+		DZA65_RS09805	0.83	-0.2
2,068,251	-		DZA65_RS09805	0.83	+1.0
2,068,251	-		DZA65_RS09805	0.83	+1.4
2,068,295	+		DZA65_RS09805	0.88	+0.2
2,068,295	+		DZA65_RS09805	0.88	-0.9
2,068,295	+		DZA65_RS09805	0.88	+0.7
2,068,296	-		DZA65_RS09805	0.88	-0.3
2,068,445	+				-1.2
2,068,446	-				-0.3
2,068,486	+				+1.0
2,068,486	+				-0.6
2,068,486	+				-0.5
2,068,486	+				+1.4
2,068,487	-				-0.2
2,068,491	+				+0.8
2,068,491	+				-0.3
2,068,492	-				-0.9