Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09655

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,030,586	+				+0.4
2,030,586	+				-0.8
2,030,587	-				+0.1
2,030,587	-				-0.5
2,030,643	+				+0.2
2,030,651	+				-0.7
2,030,651	+				-0.1
2,030,652	-				+0.5
2,030,654	+				-0.4
2,030,655	-				+1.0
2,030,732	-				-1.1
2,030,732	-				+1.1
2,030,732	-				-0.3
2,030,732	-				+0.6
2,030,732	-				+0.4
2,030,732	-				+0.0
2,030,734	+				-0.5
2,030,734	+				-0.4
2,030,734	+				-0.6
2,030,735	-				+0.2
2,030,735	-				-2.4
2,030,735	-				+1.0
2,030,746	+				-1.9
2,030,941	+		DZA65_RS09650	0.32	-1.2
2,030,942	-		DZA65_RS09650	0.33	-1.1
2,031,142	+		DZA65_RS09650	0.56	+1.1
2,031,142	+		DZA65_RS09650	0.56	+0.5
2,031,143	-		DZA65_RS09650	0.56	-0.8
2,031,143	-		DZA65_RS09650	0.56	-0.5
2,031,194	-		DZA65_RS09650	0.62	-2.2
2,031,220	+		DZA65_RS09650	0.65	-0.3
2,031,220	+		DZA65_RS09650	0.65	+0.4
2,031,221	-		DZA65_RS09650	0.65	+0.1
2,031,221	-		DZA65_RS09650	0.65	-0.1
2,031,273	+		DZA65_RS09650	0.72	-1.3
2,031,274	-		DZA65_RS09650	0.72	+1.2
2,031,274	-		DZA65_RS09650	0.72	+0.1
2,031,274	-		DZA65_RS09650	0.72	-0.6
2,031,280	-		DZA65_RS09650	0.72	-0.1
2,031,323	+		DZA65_RS09650	0.78	+1.0
2,031,324	-		DZA65_RS09650	0.78	+0.1
2,031,324	-		DZA65_RS09650	0.78	-0.8
2,031,361	+		DZA65_RS09650	0.82	+1.0
2,031,362	-		DZA65_RS09650	0.82	-1.0
2,031,425	+		DZA65_RS09650	0.90	+1.0
2,031,493	-				-2.2
2,031,493	-				+1.0
2,031,626	-				+1.6
2,031,657	+		DZA65_RS09655	0.11	-1.1
2,031,658	-		DZA65_RS09655	0.11	+1.1
2,031,665	+		DZA65_RS09655	0.12	+0.3
2,031,665	+		DZA65_RS09655	0.12	+0.4
2,031,665	+		DZA65_RS09655	0.12	-1.1
2,031,665	+		DZA65_RS09655	0.12	+0.2
2,031,665	+		DZA65_RS09655	0.12	-0.6
2,031,665	+		DZA65_RS09655	0.12	-1.9
2,031,665	+		DZA65_RS09655	0.12	+0.9
2,031,665	+		DZA65_RS09655	0.12	+1.2
2,031,666	-		DZA65_RS09655	0.12	-0.2
2,031,666	-		DZA65_RS09655	0.12	+1.3
2,031,666	-		DZA65_RS09655	0.12	-0.7
2,031,666	-		DZA65_RS09655	0.12	-1.9
2,031,666	-		DZA65_RS09655	0.12	-1.8
2,031,666	-		DZA65_RS09655	0.12	+1.3
2,031,666	-		DZA65_RS09655	0.12	+1.3
2,031,666	-		DZA65_RS09655	0.12	-2.4
2,031,669	-		DZA65_RS09655	0.12	-2.2
2,031,722	+		DZA65_RS09655	0.17	+2.9
2,031,925	-		DZA65_RS09655	0.35	-0.6
2,031,925	-		DZA65_RS09655	0.35	+1.1
2,031,940	+		DZA65_RS09655	0.36	-1.4
2,031,940	+		DZA65_RS09655	0.36	+0.4
2,032,109	-		DZA65_RS09655	0.51	-2.2
2,032,240	+		DZA65_RS09655	0.63	-1.5
2,032,240	+				+3.3
2,032,240	+		DZA65_RS09655	0.63	+0.0
2,032,240	+		DZA65_RS09655	0.63	+1.4
2,032,240	+		DZA65_RS09655	0.63	+0.6
2,032,241	-		DZA65_RS09655	0.63	+0.0
2,032,241	-		DZA65_RS09655	0.63	+0.1
2,032,241	-		DZA65_RS09655	0.63	+0.4
2,032,242	+		DZA65_RS09655	0.63	-0.1
2,032,242	+		DZA65_RS09655	0.63	+0.0
2,032,242	+		DZA65_RS09655	0.63	-0.4
2,032,242	+		DZA65_RS09655	0.63	-1.2
2,032,242	+		DZA65_RS09655	0.63	+0.5
2,032,243	-		DZA65_RS09655	0.63	+0.4
2,032,243	-		DZA65_RS09655	0.63	+0.6
2,032,243	-		DZA65_RS09655	0.63	+0.0
2,032,243	-		DZA65_RS09655	0.63	+0.1
2,032,243	-		DZA65_RS09655	0.63	+2.0
2,032,243	-		DZA65_RS09655	0.63	+1.5
2,032,243	-		DZA65_RS09655	0.63	-0.0
2,032,243	-		DZA65_RS09655	0.63	+0.8
2,032,243	-		DZA65_RS09655	0.63	-0.5
2,032,383	+		DZA65_RS09655	0.76	+0.7
2,032,384	-		DZA65_RS09655	0.76	-1.9
2,032,384	-		DZA65_RS09655	0.76	-0.6
2,032,384	-		DZA65_RS09655	0.76	+0.7
2,032,512	+		DZA65_RS09655	0.87	+0.4
2,032,512	+		DZA65_RS09655	0.87	+0.4
2,032,512	+		DZA65_RS09655	0.87	+0.4
2,032,512	+		DZA65_RS09655	0.87	-3.3
2,032,513	-		DZA65_RS09655	0.87	+0.7
2,032,513	-		DZA65_RS09655	0.87	+0.1
2,032,513	-		DZA65_RS09655	0.87	-0.4
2,032,684	-				-1.5
2,032,698	+				-0.9
2,032,699	-				-0.8
2,032,699	-				-0.2
2,032,704	+		DZA65_RS22855	0.11	-2.6
2,032,704	+		DZA65_RS22855	0.11	-0.4
2,032,705	-		DZA65_RS22855	0.11	+1.1
2,032,717	-		DZA65_RS22855	0.18	+0.9
2,032,723	-		DZA65_RS22855	0.22	-0.5
2,032,729	-		DZA65_RS22855	0.25	-2.4
2,032,729	-		DZA65_RS22855	0.25	+2.1
2,032,740	+		DZA65_RS22855	0.32	-2.9
2,032,740	+		DZA65_RS22855	0.32	-0.2
2,032,784	+		DZA65_RS22855	0.57	+0.1
2,032,785	-		DZA65_RS22855	0.57	-0.8
2,032,818	+		DZA65_RS22855	0.76	-0.6
2,032,818	+		DZA65_RS22855	0.76	-0.5
2,032,818	+		DZA65_RS22855	0.76	-0.1
2,032,818	+		DZA65_RS22855	0.76	-2.8
2,032,818	+		DZA65_RS22855	0.76	-0.0
2,032,818	+		DZA65_RS22855	0.76	-1.2
2,032,818	+		DZA65_RS22855	0.76	-2.2
2,032,818	+		DZA65_RS22855	0.76	-2.6
2,032,819	-		DZA65_RS22855	0.77	-0.6
2,032,819	-		DZA65_RS22855	0.77	-1.6
2,032,819	-		DZA65_RS22855	0.77	-0.7
2,032,819	-		DZA65_RS22855	0.77	-0.9
2,032,819	-		DZA65_RS22855	0.77	+0.2
2,032,847	+				-0.1
2,032,847	+				-0.0
2,032,847	+				-1.6
2,032,863	+				-0.0
2,032,863	+				-0.2
2,032,863	+				+0.9
2,032,864	-				-1.0
2,032,879	+				+0.7
2,032,941	+				-0.3
2,032,941	+				-0.1
2,032,941	+				+0.7
2,032,942	-				-1.4
2,032,942	-				-0.8
2,033,081	+				+0.4
2,033,081	+		DZA65_RS09660	0.25	-0.9
2,033,082	-		DZA65_RS09660	0.26	-0.2
2,033,290	-		DZA65_RS09660	0.49	-0.7
2,033,317	+		DZA65_RS09660	0.52	-2.0
2,033,318	-		DZA65_RS09660	0.53	-1.5
2,033,333	-		DZA65_RS09660	0.54	-0.3
2,033,390	+		DZA65_RS09660	0.61	-0.4
2,033,403	-		DZA65_RS09660	0.62	+0.4
2,033,456	-		DZA65_RS09660	0.68	+0.4
2,033,523	+		DZA65_RS09660	0.76	-1.0
2,033,523	+		DZA65_RS09660	0.76	-0.8
2,033,524	-		DZA65_RS09660	0.76	-0.2
2,033,524	-		DZA65_RS09660	0.76	-1.4
2,033,524	-		DZA65_RS09660	0.76	-2.4
2,033,524	-		DZA65_RS09660	0.76	-1.2
2,033,524	-		DZA65_RS09660	0.76	-0.0
2,033,534	+		DZA65_RS09660	0.77	+0.7
2,033,534	+		DZA65_RS09660	0.77	+0.5
2,033,535	-		DZA65_RS09660	0.77	-1.3