Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09610

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,021,295	+		DZA65_RS09605	0.18	+0.1
2,021,337	+		DZA65_RS09605	0.22	+1.4
2,021,359	-		DZA65_RS09605	0.24	-0.1
2,021,364	-		DZA65_RS09605	0.24	-1.0
2,021,402	+		DZA65_RS09605	0.28	+0.8
2,021,403	-		DZA65_RS09605	0.28	+0.1
2,021,418	+		DZA65_RS09605	0.30	-1.1
2,021,446	+		DZA65_RS09605	0.32	-0.8
2,021,447	-		DZA65_RS09605	0.33	+0.0
2,021,556	+		DZA65_RS09605	0.43	+0.2
2,021,557	-		DZA65_RS09605	0.43	-0.6
2,021,557	-		DZA65_RS09605	0.43	-2.7
2,021,565	+		DZA65_RS09605	0.44	-1.9
2,021,565	+		DZA65_RS09605	0.44	-0.6
2,021,566	-		DZA65_RS09605	0.44	-1.4
2,021,628	+		DZA65_RS09605	0.50	+0.4
2,021,628	+		DZA65_RS09605	0.50	+0.2
2,021,703	+		DZA65_RS09605	0.58	-0.3
2,021,704	-		DZA65_RS09605	0.58	+1.3
2,021,726	+		DZA65_RS09605	0.60	-1.0
2,021,952	+		DZA65_RS09605	0.82	-0.6
2,021,967	-		DZA65_RS09605	0.83	+1.4
2,022,134	+				-2.1
2,022,135	-				-1.7
2,022,136	+				+0.3
2,022,136	+				-0.1
2,022,147	-				+0.1
2,022,256	+				-0.7
2,022,275	+				-0.7
2,022,275	+				+0.1
2,022,275	+				+1.3
2,022,287	+				+0.7
2,022,295	+				+0.4
2,022,295	+				-1.7
2,022,295	+				+0.4
2,022,348	-				-0.1
2,022,348	-				-1.4
2,022,351	-				-0.7
2,022,352	+				+0.0
2,022,398	+				+0.4
2,022,398	+				-0.4
2,022,398	+				-0.6
2,022,398	+				-0.2
2,022,398	+				+0.7
2,022,450	+				-0.3
2,022,451	-		DZA65_RS09610	0.10	-0.2
2,022,522	+		DZA65_RS09610	0.14	+0.2
2,022,522	+		DZA65_RS09610	0.14	-0.8
2,022,542	+		DZA65_RS09610	0.15	+0.9
2,022,593	+		DZA65_RS09610	0.18	-1.1
2,022,621	+		DZA65_RS09610	0.20	-1.4
2,022,621	+		DZA65_RS09610	0.20	+2.2
2,022,622	-		DZA65_RS09610	0.20	-1.1
2,022,638	+		DZA65_RS09610	0.21	-0.3
2,022,762	+		DZA65_RS09610	0.28	-0.6
2,022,762	+		DZA65_RS09610	0.28	+0.4
2,022,763	-		DZA65_RS09610	0.28	-0.2
2,022,763	-		DZA65_RS09610	0.28	-0.7
2,022,829	+		DZA65_RS09610	0.32	-1.4
2,022,829	+		DZA65_RS09610	0.32	+0.7
2,022,829	+		DZA65_RS09610	0.32	+1.0
2,022,830	-		DZA65_RS09610	0.32	+0.2
2,022,830	-		DZA65_RS09610	0.32	-0.7
2,022,832	+		DZA65_RS09610	0.32	-1.6
2,022,832	+		DZA65_RS09610	0.32	-0.3
2,022,832	+		DZA65_RS09610	0.32	+0.4
2,022,832	+		DZA65_RS09610	0.32	-2.6
2,022,833	-		DZA65_RS09610	0.32	-0.9
2,023,044	-		DZA65_RS09610	0.44	-1.1
2,023,044	-		DZA65_RS09610	0.44	-3.3
2,023,074	+		DZA65_RS09610	0.46	-0.6
2,023,075	-		DZA65_RS09610	0.46	-0.7
2,023,075	-		DZA65_RS09610	0.46	-0.5
2,023,075	-		DZA65_RS09610	0.46	-0.0
2,023,075	-		DZA65_RS09610	0.46	+0.1
2,023,075	-		DZA65_RS09610	0.46	-1.3
2,023,075	-		DZA65_RS09610	0.46	-0.8
2,023,089	+		DZA65_RS09610	0.46	+0.1
2,023,089	+		DZA65_RS09610	0.46	-0.8
2,023,089	+		DZA65_RS09610	0.46	-0.1
2,023,090	-		DZA65_RS09610	0.47	-0.3
2,023,103	+		DZA65_RS09610	0.47	+0.3
2,023,103	+		DZA65_RS09610	0.47	-1.1
2,023,103	+		DZA65_RS09610	0.47	-0.4
2,023,104	-		DZA65_RS09610	0.47	-1.6
2,023,104	-		DZA65_RS09610	0.47	-0.9
2,023,191	-		DZA65_RS09610	0.52	-0.4
2,023,262	+		DZA65_RS09610	0.56	-1.7
2,023,263	-		DZA65_RS09610	0.56	+0.1
2,023,263	-		DZA65_RS09610	0.56	+2.2
2,023,339	+		DZA65_RS09610	0.61	-0.4
2,023,401	+		DZA65_RS09610	0.64	+0.6
2,023,401	+		DZA65_RS09610	0.64	-1.0
2,023,402	-		DZA65_RS09610	0.64	+0.4
2,023,402	-		DZA65_RS09610	0.64	-0.0
2,023,452	+		DZA65_RS09610	0.67	+1.1
2,023,452	+		DZA65_RS09610	0.67	-1.1
2,023,452	+		DZA65_RS09610	0.67	-0.1
2,023,452	+		DZA65_RS09610	0.67	-0.1
2,023,453	-		DZA65_RS09610	0.67	+0.2
2,023,453	-		DZA65_RS09610	0.67	-1.0
2,023,463	+		DZA65_RS09610	0.68	+0.4
2,023,608	-		DZA65_RS09610	0.76	+0.3
2,023,639	+		DZA65_RS09610	0.78	-1.7
2,023,665	+		DZA65_RS09610	0.79	-0.3
2,023,666	-		DZA65_RS09610	0.79	-3.0
2,023,666	-		DZA65_RS09610	0.79	+0.2
2,023,666	-		DZA65_RS09610	0.79	+0.4
2,023,666	-		DZA65_RS09610	0.79	-0.6
2,023,666	-		DZA65_RS09610	0.79	+1.3
2,023,784	+		DZA65_RS09610	0.86	+0.4
2,023,863	-				-1.2
2,023,872	+				-0.9
2,023,872	+				-0.8
2,023,873	-				+1.1
2,023,997	+				+2.4
2,024,144	+		DZA65_RS09615	0.49	-0.2
2,024,145	-		DZA65_RS09615	0.49	-0.7
2,024,145	-		DZA65_RS09615	0.49	+0.8
2,024,145	-				-1.2
2,024,199	+		DZA65_RS09615	0.72	+0.4
2,024,200	-		DZA65_RS09615	0.72	+0.4
2,024,200	-		DZA65_RS09615	0.72	+0.4
2,024,200	-		DZA65_RS09615	0.72	+1.0
2,024,200	-				-0.6
2,024,228	+				+1.4
2,024,228	+		DZA65_RS09615	0.84	-0.6
2,024,228	+		DZA65_RS09615	0.84	-0.0
2,024,229	-		DZA65_RS09615	0.84	+0.4
2,024,229	-		DZA65_RS09615	0.84	+0.2
2,024,229	-		DZA65_RS09615	0.84	-0.3
2,024,229	-		DZA65_RS09615	0.84	+0.0
2,024,251	+				-0.6
2,024,252	-				-0.6
2,024,322	-		DZA65_RS09620	0.10	+0.0
2,024,338	+		DZA65_RS09620	0.13	+1.4
2,024,338	+		DZA65_RS09620	0.13	+0.9
2,024,338	+		DZA65_RS09620	0.13	-0.2
2,024,339	-		DZA65_RS09620	0.13	-0.9
2,024,339	-		DZA65_RS09620	0.13	+0.0
2,024,339	-		DZA65_RS09620	0.13	-2.6
2,024,339	-		DZA65_RS09620	0.13	-1.7
2,024,538	+		DZA65_RS09620	0.39	-1.6
2,024,538	+		DZA65_RS09620	0.39	+0.1
2,024,538	+		DZA65_RS09620	0.39	-0.7
2,024,538	+		DZA65_RS09620	0.39	-2.2
2,024,538	+				+2.0
2,024,538	+		DZA65_RS09620	0.39	-0.3
2,024,539	-		DZA65_RS09620	0.39	+0.2
2,024,539	-		DZA65_RS09620	0.39	-0.3
2,024,559	-		DZA65_RS09620	0.42	+1.3
2,024,559	-		DZA65_RS09620	0.42	+0.4
2,024,560	-		DZA65_RS09620	0.42	-2.4
2,024,637	+		DZA65_RS09620	0.53	-0.9
2,024,719	+		DZA65_RS09620	0.64	+1.9
2,024,720	-		DZA65_RS09620	0.64	-1.0
2,024,784	-				-0.9
2,024,947	+				-0.8
2,024,947	+				+0.4
2,024,948	-				+0.2
2,024,959	+				+0.4
2,024,959	+				+0.3
2,024,959	+				+1.0
2,024,959	+				-0.6
2,024,959	+				-0.1
2,024,959	+				+0.4
2,024,959	+				-0.4
2,024,959	+				+0.3
2,024,959	+				+0.1
2,024,959	+				+0.0
2,024,959	+				+0.8
2,024,960	-				+0.8
2,024,960	-				-0.4
2,024,960	-				-0.2
2,024,960	-				+0.4
2,024,960	-				+0.1
2,024,960	-				-0.8
2,024,960	-				-1.3
2,024,960	-				-2.3
2,024,960	-				+0.1
2,024,960	-				-0.1
2,024,960	-				+1.1
2,024,960	-				-1.0
2,024,960	-				-1.2
2,024,960	-				+0.0