Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09320

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09315 and DZA65_RS09320 are separated by 5 nucleotidesDZA65_RS09320 and DZA65_RS09325 are separated by 7 nucleotidesDZA65_RS09325 and DZA65_RS09330 overlap by 11 nucleotides DZA65_RS09315: DZA65_RS09315 - ABC transporter permease, at 1,965,451 to 1,966,422 _RS09315 DZA65_RS09320: DZA65_RS09320 - ABC transporter permease, at 1,966,428 to 1,967,273 _RS09320 DZA65_RS09325: DZA65_RS09325 - ATP-binding cassette domain-containing protein, at 1,967,281 to 1,968,270 _RS09325 DZA65_RS09330: DZA65_RS09330 - ATP-binding cassette domain-containing protein, at 1,968,260 to 1,969,237 _RS09330 Position (kb) 1966 1967 1968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1965.441 kb on + strandat 1965.441 kb on + strandat 1965.441 kb on + strandat 1965.442 kb on - strandat 1965.442 kb on - strandat 1965.456 kb on + strandat 1965.456 kb on + strandat 1965.457 kb on - strandat 1965.457 kb on - strandat 1965.457 kb on - strandat 1965.457 kb on - strandat 1965.504 kb on + strandat 1965.562 kb on + strand, within DZA65_RS09315at 1965.562 kb on + strand, within DZA65_RS09315at 1965.562 kb on + strand, within DZA65_RS09315at 1965.562 kb on + strand, within DZA65_RS09315at 1965.562 kb on + strand, within DZA65_RS09315at 1965.562 kb on + strand, within DZA65_RS09315at 1965.562 kb on + strand, within DZA65_RS09315at 1965.562 kb on + strand, within DZA65_RS09315at 1965.562 kb on + strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.563 kb on - strand, within DZA65_RS09315at 1965.576 kb on + strand, within DZA65_RS09315at 1965.576 kb on + strand, within DZA65_RS09315at 1965.576 kb on + strand, within DZA65_RS09315at 1965.577 kb on - strand, within DZA65_RS09315at 1965.577 kb on - strand, within DZA65_RS09315at 1965.577 kb on - strand, within DZA65_RS09315at 1965.643 kb on + strand, within DZA65_RS09315at 1965.643 kb on + strand, within DZA65_RS09315at 1965.644 kb on - strand, within DZA65_RS09315at 1965.859 kb on + strand, within DZA65_RS09315at 1965.859 kb on + strand, within DZA65_RS09315at 1965.859 kb on + strand, within DZA65_RS09315at 1965.859 kb on + strand, within DZA65_RS09315at 1965.859 kb on + strand, within DZA65_RS09315at 1965.860 kb on - strand, within DZA65_RS09315at 1965.860 kb on - strand, within DZA65_RS09315at 1965.860 kb on - strand, within DZA65_RS09315at 1965.860 kb on - strand, within DZA65_RS09315at 1965.860 kb on - strand, within DZA65_RS09315at 1965.860 kb on - strand, within DZA65_RS09315at 1965.860 kb on - strand, within DZA65_RS09315at 1965.860 kb on - strand, within DZA65_RS09315at 1965.868 kb on - strand, within DZA65_RS09315at 1965.927 kb on + strand, within DZA65_RS09315at 1965.928 kb on - strand, within DZA65_RS09315at 1965.928 kb on - strand, within DZA65_RS09315at 1966.027 kb on + strand, within DZA65_RS09315at 1966.027 kb on + strand, within DZA65_RS09315at 1966.028 kb on - strand, within DZA65_RS09315at 1966.028 kb on - strand, within DZA65_RS09315at 1966.042 kb on + strand, within DZA65_RS09315at 1966.042 kb on + strand, within DZA65_RS09315at 1966.042 kb on + strand, within DZA65_RS09315at 1966.043 kb on - strand, within DZA65_RS09315at 1966.043 kb on - strand, within DZA65_RS09315at 1966.043 kb on - strand, within DZA65_RS09315at 1966.051 kb on + strand, within DZA65_RS09315at 1966.052 kb on - strand, within DZA65_RS09315at 1966.052 kb on - strand, within DZA65_RS09315at 1966.052 kb on - strand, within DZA65_RS09315at 1966.052 kb on - strand, within DZA65_RS09315at 1966.052 kb on - strand, within DZA65_RS09315at 1966.090 kb on + strand, within DZA65_RS09315at 1966.219 kb on + strand, within DZA65_RS09315at 1966.219 kb on + strand, within DZA65_RS09315at 1966.220 kb on - strand, within DZA65_RS09315at 1966.220 kb on - strand, within DZA65_RS09315at 1966.220 kb on - strand, within DZA65_RS09315at 1966.220 kb on - strand, within DZA65_RS09315at 1966.252 kb on - strand, within DZA65_RS09315at 1966.366 kb on + strandat 1966.367 kb on - strandat 1966.367 kb on - strandat 1966.633 kb on - strand, within DZA65_RS09320at 1966.633 kb on - strand, within DZA65_RS09320at 1966.633 kb on - strand, within DZA65_RS09320at 1966.633 kb on - strand, within DZA65_RS09320at 1966.651 kb on - strand, within DZA65_RS09320at 1966.782 kb on - strand, within DZA65_RS09320at 1966.782 kb on - strand, within DZA65_RS09320at 1966.830 kb on + strand, within DZA65_RS09320at 1966.830 kb on + strand, within DZA65_RS09320at 1966.831 kb on - strand, within DZA65_RS09320at 1966.831 kb on - strand, within DZA65_RS09320at 1966.831 kb on - strand, within DZA65_RS09320at 1966.831 kb on - strand, within DZA65_RS09320at 1966.856 kb on + strand, within DZA65_RS09320at 1966.856 kb on + strand, within DZA65_RS09320at 1966.856 kb on + strand, within DZA65_RS09320at 1966.856 kb on + strand, within DZA65_RS09320at 1966.857 kb on - strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.947 kb on + strand, within DZA65_RS09320at 1966.994 kb on + strand, within DZA65_RS09320at 1966.994 kb on + strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.019 kb on - strand, within DZA65_RS09320at 1967.019 kb on - strand, within DZA65_RS09320at 1967.021 kb on + strand, within DZA65_RS09320at 1967.021 kb on + strand, within DZA65_RS09320at 1967.022 kb on - strand, within DZA65_RS09320at 1967.022 kb on - strand, within DZA65_RS09320at 1967.022 kb on - strand, within DZA65_RS09320at 1967.022 kb on - strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.147 kb on + strand, within DZA65_RS09320at 1967.148 kb on - strand, within DZA65_RS09320at 1967.148 kb on - strand, within DZA65_RS09320at 1967.213 kb on + strandat 1967.213 kb on + strandat 1967.213 kb on + strandat 1967.213 kb on + strandat 1967.214 kb on - strandat 1967.221 kb on + strandat 1967.294 kb on + strandat 1967.294 kb on + strandat 1967.295 kb on - strandat 1967.437 kb on - strand, within DZA65_RS09325at 1967.437 kb on - strand, within DZA65_RS09325at 1967.437 kb on - strand, within DZA65_RS09325at 1967.725 kb on + strand, within DZA65_RS09325at 1967.847 kb on + strand, within DZA65_RS09325at 1967.848 kb on - strand, within DZA65_RS09325at 1967.875 kb on - strand, within DZA65_RS09325at 1967.875 kb on - strand, within DZA65_RS09325at 1967.875 kb on - strand, within DZA65_RS09325at 1967.917 kb on - strand, within DZA65_RS09325at 1967.968 kb on + strand, within DZA65_RS09325at 1967.968 kb on + strand, within DZA65_RS09325at 1967.968 kb on + strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1968.031 kb on + strand, within DZA65_RS09325at 1968.031 kb on + strand, within DZA65_RS09325at 1968.031 kb on + strand, within DZA65_RS09325at 1968.031 kb on + strand, within DZA65_RS09325at 1968.166 kb on - strand, within DZA65_RS09325at 1968.224 kb on + strandat 1968.224 kb on + strandat 1968.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,965,441 + +0.0
1,965,441 + +0.2
1,965,441 + -0.3
1,965,442 - -1.1
1,965,442 - -1.7
1,965,456 + -0.1
1,965,456 + -0.5
1,965,457 - +0.0
1,965,457 - +0.3
1,965,457 - -0.9
1,965,457 - -1.5
1,965,504 + +1.8
1,965,562 + DZA65_RS09315 0.11 -0.2
1,965,562 + DZA65_RS09315 0.11 +0.0
1,965,562 + DZA65_RS09315 0.11 +0.0
1,965,562 + DZA65_RS09315 0.11 -3.0
1,965,562 + DZA65_RS09315 0.11 -0.3
1,965,562 + DZA65_RS09315 0.11 -0.3
1,965,562 + DZA65_RS09315 0.11 +0.6
1,965,562 + DZA65_RS09315 0.11 +0.8
1,965,562 + DZA65_RS09315 0.11 +1.5
1,965,563 - DZA65_RS09315 0.12 -1.2
1,965,563 - DZA65_RS09315 0.12 -1.1
1,965,563 - DZA65_RS09315 0.12 -1.3
1,965,563 - DZA65_RS09315 0.12 -0.6
1,965,563 - DZA65_RS09315 0.12 +1.2
1,965,563 - DZA65_RS09315 0.12 -1.4
1,965,563 - DZA65_RS09315 0.12 -0.9
1,965,563 - DZA65_RS09315 0.12 -0.5
1,965,563 - DZA65_RS09315 0.12 +0.7
1,965,563 - DZA65_RS09315 0.12 +3.0
1,965,576 + DZA65_RS09315 0.13 -1.9
1,965,576 + DZA65_RS09315 0.13 -1.9
1,965,576 + DZA65_RS09315 0.13 -1.1
1,965,577 - DZA65_RS09315 0.13 +0.6
1,965,577 - DZA65_RS09315 0.13 +1.1
1,965,577 - DZA65_RS09315 0.13 -0.5
1,965,643 + DZA65_RS09315 0.20 -0.1
1,965,643 + DZA65_RS09315 0.20 -1.4
1,965,644 - DZA65_RS09315 0.20 +2.5
1,965,859 + DZA65_RS09315 0.42 +0.5
1,965,859 + DZA65_RS09315 0.42 -0.6
1,965,859 + DZA65_RS09315 0.42 +0.0
1,965,859 + DZA65_RS09315 0.42 -0.2
1,965,859 + DZA65_RS09315 0.42 +0.3
1,965,860 - DZA65_RS09315 0.42 -0.4
1,965,860 - DZA65_RS09315 0.42 +1.1
1,965,860 - DZA65_RS09315 0.42 +0.1
1,965,860 - DZA65_RS09315 0.42 +0.1
1,965,860 - DZA65_RS09315 0.42 +0.2
1,965,860 - DZA65_RS09315 0.42 -0.1
1,965,860 - DZA65_RS09315 0.42 +0.5
1,965,860 - DZA65_RS09315 0.42 +1.0
1,965,868 - DZA65_RS09315 0.43 -0.3
1,965,927 + DZA65_RS09315 0.49 -1.0
1,965,928 - DZA65_RS09315 0.49 +2.5
1,965,928 - DZA65_RS09315 0.49 -0.4
1,966,027 + DZA65_RS09315 0.59 +1.5
1,966,027 + DZA65_RS09315 0.59 -1.7
1,966,028 - DZA65_RS09315 0.59 -0.0
1,966,028 - DZA65_RS09315 0.59 +0.3
1,966,042 + DZA65_RS09315 0.61 -0.5
1,966,042 + DZA65_RS09315 0.61 -1.3
1,966,042 + DZA65_RS09315 0.61 -0.5
1,966,043 - DZA65_RS09315 0.61 -1.1
1,966,043 - DZA65_RS09315 0.61 +0.5
1,966,043 - DZA65_RS09315 0.61 -1.7
1,966,051 + DZA65_RS09315 0.62 -1.3
1,966,052 - DZA65_RS09315 0.62 +0.5
1,966,052 - DZA65_RS09315 0.62 -0.1
1,966,052 - DZA65_RS09315 0.62 +0.3
1,966,052 - DZA65_RS09315 0.62 -1.1
1,966,052 - DZA65_RS09315 0.62 +1.0
1,966,090 + DZA65_RS09315 0.66 +0.3
1,966,219 + DZA65_RS09315 0.79 -1.1
1,966,219 + DZA65_RS09315 0.79 +0.8
1,966,220 - DZA65_RS09315 0.79 +0.9
1,966,220 - DZA65_RS09315 0.79 -0.4
1,966,220 - DZA65_RS09315 0.79 -0.1
1,966,220 - DZA65_RS09315 0.79 -0.5
1,966,252 - DZA65_RS09315 0.82 -0.2
1,966,366 + -1.1
1,966,367 - +0.2
1,966,367 - -0.5
1,966,633 - DZA65_RS09320 0.24 +0.4
1,966,633 - DZA65_RS09320 0.24 +0.8
1,966,633 - DZA65_RS09320 0.24 -0.1
1,966,633 - DZA65_RS09320 0.24 -0.7
1,966,651 - DZA65_RS09320 0.26 -0.0
1,966,782 - DZA65_RS09320 0.42 -0.3
1,966,782 - DZA65_RS09320 0.42 +0.8
1,966,830 + DZA65_RS09320 0.48 +1.0
1,966,830 + DZA65_RS09320 0.48 +1.1
1,966,831 - DZA65_RS09320 0.48 +0.3
1,966,831 - DZA65_RS09320 0.48 -0.2
1,966,831 - DZA65_RS09320 0.48 -3.0
1,966,831 - DZA65_RS09320 0.48 +1.3
1,966,856 + DZA65_RS09320 0.51 +0.1
1,966,856 + DZA65_RS09320 0.51 -0.5
1,966,856 + DZA65_RS09320 0.51 -0.7
1,966,856 + DZA65_RS09320 0.51 +0.1
1,966,857 - DZA65_RS09320 0.51 +0.3
1,966,938 + DZA65_RS09320 0.60 +0.7
1,966,938 + DZA65_RS09320 0.60 +0.2
1,966,938 + DZA65_RS09320 0.60 +2.0
1,966,938 + DZA65_RS09320 0.60 -1.1
1,966,938 + DZA65_RS09320 0.60 +1.1
1,966,939 - DZA65_RS09320 0.60 -1.5
1,966,939 - DZA65_RS09320 0.60 +1.0
1,966,939 - DZA65_RS09320 0.60 +0.3
1,966,939 - DZA65_RS09320 0.60 -1.3
1,966,939 - DZA65_RS09320 0.60 -0.1
1,966,947 + DZA65_RS09320 0.61 +0.7
1,966,994 + DZA65_RS09320 0.67 +0.5
1,966,994 + DZA65_RS09320 0.67 -0.3
1,966,995 - DZA65_RS09320 0.67 -0.5
1,966,995 - DZA65_RS09320 0.67 -0.5
1,966,995 - DZA65_RS09320 0.67 +0.7
1,966,995 - DZA65_RS09320 0.67 -0.5
1,966,995 - DZA65_RS09320 0.67 +0.5
1,966,995 - DZA65_RS09320 0.67 +0.5
1,966,995 - DZA65_RS09320 0.67 -1.7
1,967,018 + DZA65_RS09320 0.70 -0.3
1,967,018 + DZA65_RS09320 0.70 +0.0
1,967,018 + DZA65_RS09320 0.70 -1.7
1,967,018 + DZA65_RS09320 0.70 +1.0
1,967,018 + DZA65_RS09320 0.70 -1.7
1,967,018 + DZA65_RS09320 0.70 -0.3
1,967,018 + DZA65_RS09320 0.70 +0.1
1,967,018 + DZA65_RS09320 0.70 -1.7
1,967,018 + DZA65_RS09320 0.70 +0.2
1,967,019 - DZA65_RS09320 0.70 -0.0
1,967,019 - DZA65_RS09320 0.70 -2.1
1,967,021 + DZA65_RS09320 0.70 -0.5
1,967,021 + DZA65_RS09320 0.70 +1.1
1,967,022 - DZA65_RS09320 0.70 -0.2
1,967,022 - DZA65_RS09320 0.70 -0.3
1,967,022 - DZA65_RS09320 0.70 +0.2
1,967,022 - DZA65_RS09320 0.70 -1.5
1,967,145 + DZA65_RS09320 0.85 -0.8
1,967,145 + DZA65_RS09320 0.85 -0.3
1,967,145 + DZA65_RS09320 0.85 -1.5
1,967,145 + DZA65_RS09320 0.85 +0.1
1,967,145 + DZA65_RS09320 0.85 -0.1
1,967,145 + DZA65_RS09320 0.85 +0.1
1,967,145 + DZA65_RS09320 0.85 +1.1
1,967,145 + DZA65_RS09320 0.85 +0.3
1,967,145 + DZA65_RS09320 0.85 -0.5
1,967,146 - DZA65_RS09320 0.85 +0.5
1,967,146 - DZA65_RS09320 0.85 +0.1
1,967,146 - DZA65_RS09320 0.85 +0.2
1,967,146 - DZA65_RS09320 0.85 +1.2
1,967,146 - DZA65_RS09320 0.85 +3.9
1,967,146 - DZA65_RS09320 0.85 +0.5
1,967,146 - DZA65_RS09320 0.85 +0.6
1,967,146 - DZA65_RS09320 0.85 +1.0
1,967,147 + DZA65_RS09320 0.85 +0.4
1,967,148 - DZA65_RS09320 0.85 -0.2
1,967,148 - DZA65_RS09320 0.85 +0.7
1,967,213 + +0.1
1,967,213 + +1.8
1,967,213 + -0.3
1,967,213 + +0.7
1,967,214 - +0.0
1,967,221 + -0.5
1,967,294 + -0.3
1,967,294 + -0.5
1,967,295 - -0.5
1,967,437 - DZA65_RS09325 0.16 +0.6
1,967,437 - DZA65_RS09325 0.16 +2.5
1,967,437 - DZA65_RS09325 0.16 -1.4
1,967,725 + DZA65_RS09325 0.45 -0.4
1,967,847 + DZA65_RS09325 0.57 +0.0
1,967,848 - DZA65_RS09325 0.57 +1.0
1,967,875 - DZA65_RS09325 0.60 -0.9
1,967,875 - DZA65_RS09325 0.60 +0.5
1,967,875 - DZA65_RS09325 0.60 -1.5
1,967,917 - DZA65_RS09325 0.64 -0.2
1,967,968 + DZA65_RS09325 0.69 +0.8
1,967,968 + DZA65_RS09325 0.69 -0.5
1,967,968 + DZA65_RS09325 0.69 -0.3
1,967,969 - DZA65_RS09325 0.69 +0.5
1,967,969 - DZA65_RS09325 0.69 -1.5
1,967,969 - DZA65_RS09325 0.69 -0.3
1,967,969 - DZA65_RS09325 0.69 +2.4
1,967,969 - DZA65_RS09325 0.69 +0.4
1,967,969 - DZA65_RS09325 0.69 -1.5
1,967,969 - DZA65_RS09325 0.69 -1.1
1,967,969 - DZA65_RS09325 0.69 -2.5
1,967,969 - DZA65_RS09325 0.69 -0.4
1,967,969 - DZA65_RS09325 0.69 -0.1
1,967,969 - DZA65_RS09325 0.69 -0.3
1,967,969 - DZA65_RS09325 0.69 -1.5
1,967,969 - DZA65_RS09325 0.69 -0.3
1,967,969 - DZA65_RS09325 0.69 +0.0
1,967,969 - DZA65_RS09325 0.69 -1.0
1,968,031 + DZA65_RS09325 0.76 +0.5
1,968,031 + DZA65_RS09325 0.76 +1.4
1,968,031 + DZA65_RS09325 0.76 +1.3
1,968,031 + DZA65_RS09325 0.76 -0.1
1,968,166 - DZA65_RS09325 0.89 -1.1
1,968,224 + +1.3
1,968,224 + -0.5
1,968,225 - -0.3

Or see this region's nucleotide sequence