Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09250

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS09245 and DZA65_RS09250 are separated by 1 nucleotidesDZA65_RS09250 and DZA65_RS09255 are separated by 1 nucleotides DZA65_RS09245: DZA65_RS09245 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,949,985 to 1,951,370 _RS09245 DZA65_RS09250: DZA65_RS09250 - allophanate hydrolase subunit 1, at 1,951,372 to 1,952,256 _RS09250 DZA65_RS09255: DZA65_RS09255 - biotin-dependent carboxyltransferase, at 1,952,258 to 1,953,265 _RS09255 Position (kb) 1951 1952 1953Strain fitness (log2 ratio) -2 -1 0 1 2at 1950.442 kb on + strand, within DZA65_RS09245at 1950.443 kb on - strand, within DZA65_RS09245at 1950.443 kb on - strand, within DZA65_RS09245at 1950.583 kb on - strand, within DZA65_RS09245at 1950.583 kb on - strand, within DZA65_RS09245at 1950.583 kb on - strand, within DZA65_RS09245at 1950.596 kb on + strand, within DZA65_RS09245at 1950.615 kb on - strand, within DZA65_RS09245at 1950.653 kb on - strand, within DZA65_RS09245at 1950.660 kb on + strand, within DZA65_RS09245at 1950.660 kb on + strand, within DZA65_RS09245at 1950.660 kb on + strand, within DZA65_RS09245at 1950.660 kb on + strand, within DZA65_RS09245at 1950.660 kb on + strand, within DZA65_RS09245at 1950.661 kb on - strand, within DZA65_RS09245at 1950.661 kb on - strand, within DZA65_RS09245at 1950.700 kb on + strand, within DZA65_RS09245at 1950.700 kb on + strand, within DZA65_RS09245at 1950.700 kb on + strand, within DZA65_RS09245at 1950.701 kb on - strand, within DZA65_RS09245at 1950.813 kb on + strand, within DZA65_RS09245at 1950.813 kb on + strand, within DZA65_RS09245at 1950.813 kb on + strand, within DZA65_RS09245at 1950.843 kb on + strand, within DZA65_RS09245at 1950.843 kb on + strand, within DZA65_RS09245at 1950.843 kb on + strand, within DZA65_RS09245at 1950.843 kb on + strand, within DZA65_RS09245at 1950.843 kb on + strand, within DZA65_RS09245at 1950.843 kb on + strand, within DZA65_RS09245at 1950.844 kb on - strand, within DZA65_RS09245at 1950.844 kb on - strand, within DZA65_RS09245at 1950.844 kb on - strand, within DZA65_RS09245at 1950.844 kb on - strand, within DZA65_RS09245at 1950.844 kb on - strand, within DZA65_RS09245at 1950.844 kb on - strand, within DZA65_RS09245at 1950.844 kb on - strand, within DZA65_RS09245at 1951.131 kb on + strand, within DZA65_RS09245at 1951.134 kb on + strand, within DZA65_RS09245at 1951.135 kb on - strand, within DZA65_RS09245at 1951.301 kb on + strandat 1951.302 kb on - strandat 1951.388 kb on + strandat 1951.388 kb on + strandat 1951.388 kb on + strandat 1951.388 kb on + strandat 1951.388 kb on + strandat 1951.389 kb on - strandat 1951.389 kb on - strandat 1951.389 kb on - strandat 1951.389 kb on - strandat 1951.389 kb on - strandat 1951.393 kb on + strandat 1951.518 kb on + strand, within DZA65_RS09250at 1951.519 kb on - strand, within DZA65_RS09250at 1951.519 kb on - strand, within DZA65_RS09250at 1951.603 kb on - strand, within DZA65_RS09250at 1951.666 kb on + strand, within DZA65_RS09250at 1951.666 kb on + strand, within DZA65_RS09250at 1951.666 kb on + strand, within DZA65_RS09250at 1951.667 kb on - strand, within DZA65_RS09250at 1951.667 kb on - strand, within DZA65_RS09250at 1951.667 kb on - strand, within DZA65_RS09250at 1951.667 kb on - strand, within DZA65_RS09250at 1951.667 kb on - strand, within DZA65_RS09250at 1951.744 kb on + strand, within DZA65_RS09250at 1951.744 kb on + strand, within DZA65_RS09250at 1951.745 kb on - strand, within DZA65_RS09250at 1951.817 kb on + strand, within DZA65_RS09250at 1951.852 kb on - strand, within DZA65_RS09250at 1951.852 kb on - strand, within DZA65_RS09250at 1951.897 kb on + strand, within DZA65_RS09250at 1951.898 kb on - strand, within DZA65_RS09250at 1951.898 kb on - strand, within DZA65_RS09250at 1951.898 kb on - strandat 1951.963 kb on + strand, within DZA65_RS09250at 1951.964 kb on - strand, within DZA65_RS09250at 1951.964 kb on - strand, within DZA65_RS09250at 1951.964 kb on - strand, within DZA65_RS09250at 1952.020 kb on + strand, within DZA65_RS09250at 1952.020 kb on + strand, within DZA65_RS09250at 1952.021 kb on - strand, within DZA65_RS09250at 1952.021 kb on - strand, within DZA65_RS09250at 1952.044 kb on + strand, within DZA65_RS09250at 1952.116 kb on + strand, within DZA65_RS09250at 1952.116 kb on + strand, within DZA65_RS09250at 1952.117 kb on - strand, within DZA65_RS09250at 1952.174 kb on + strandat 1952.217 kb on + strandat 1952.224 kb on + strandat 1952.224 kb on + strandat 1952.225 kb on - strandat 1952.225 kb on - strandat 1952.225 kb on - strandat 1952.225 kb on - strandat 1952.225 kb on - strandat 1952.225 kb on - strandat 1952.225 kb on - strandat 1952.242 kb on + strandat 1952.242 kb on + strandat 1952.243 kb on - strandat 1952.243 kb on - strandat 1952.254 kb on + strandat 1952.254 kb on + strandat 1952.254 kb on + strandat 1952.255 kb on - strandat 1952.255 kb on - strandat 1952.328 kb on + strandat 1952.328 kb on + strandat 1952.329 kb on - strandat 1952.329 kb on - strandat 1952.329 kb on - strandat 1952.351 kb on + strandat 1952.352 kb on - strandat 1952.352 kb on - strandat 1952.354 kb on + strandat 1952.354 kb on + strandat 1952.354 kb on + strandat 1952.355 kb on - strandat 1952.355 kb on - strandat 1952.355 kb on - strandat 1952.624 kb on + strand, within DZA65_RS09255at 1952.624 kb on + strand, within DZA65_RS09255at 1952.624 kb on + strand, within DZA65_RS09255at 1952.625 kb on - strand, within DZA65_RS09255at 1952.681 kb on + strand, within DZA65_RS09255at 1952.682 kb on - strand, within DZA65_RS09255at 1952.682 kb on - strand, within DZA65_RS09255at 1952.683 kb on + strand, within DZA65_RS09255at 1952.751 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.846 kb on + strand, within DZA65_RS09255at 1952.847 kb on - strand, within DZA65_RS09255at 1952.847 kb on - strand, within DZA65_RS09255at 1952.847 kb on - strand, within DZA65_RS09255at 1953.102 kb on - strand, within DZA65_RS09255at 1953.102 kb on - strand, within DZA65_RS09255at 1953.102 kb on - strand, within DZA65_RS09255at 1953.102 kb on - strand, within DZA65_RS09255at 1953.121 kb on + strand, within DZA65_RS09255at 1953.122 kb on - strand, within DZA65_RS09255at 1953.164 kb on + strand, within DZA65_RS09255at 1953.165 kb on - strandat 1953.165 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
1,950,442 + DZA65_RS09245 0.33 +0.5
1,950,443 - DZA65_RS09245 0.33 -1.5
1,950,443 - DZA65_RS09245 0.33 +0.2
1,950,583 - DZA65_RS09245 0.43 +0.5
1,950,583 - DZA65_RS09245 0.43 +0.3
1,950,583 - DZA65_RS09245 0.43 -0.8
1,950,596 + DZA65_RS09245 0.44 -0.4
1,950,615 - DZA65_RS09245 0.45 +0.0
1,950,653 - DZA65_RS09245 0.48 +0.8
1,950,660 + DZA65_RS09245 0.49 +0.5
1,950,660 + DZA65_RS09245 0.49 +0.5
1,950,660 + DZA65_RS09245 0.49 +0.3
1,950,660 + DZA65_RS09245 0.49 -0.1
1,950,660 + DZA65_RS09245 0.49 -2.0
1,950,661 - DZA65_RS09245 0.49 -0.3
1,950,661 - DZA65_RS09245 0.49 +0.5
1,950,700 + DZA65_RS09245 0.52 +0.3
1,950,700 + DZA65_RS09245 0.52 -1.1
1,950,700 + DZA65_RS09245 0.52 -0.5
1,950,701 - DZA65_RS09245 0.52 -1.1
1,950,813 + DZA65_RS09245 0.60 +0.5
1,950,813 + DZA65_RS09245 0.60 +0.7
1,950,813 + DZA65_RS09245 0.60 -0.5
1,950,843 + DZA65_RS09245 0.62 -0.3
1,950,843 + DZA65_RS09245 0.62 -1.1
1,950,843 + DZA65_RS09245 0.62 -1.1
1,950,843 + DZA65_RS09245 0.62 -0.3
1,950,843 + DZA65_RS09245 0.62 -0.6
1,950,843 + DZA65_RS09245 0.62 -0.2
1,950,844 - DZA65_RS09245 0.62 -0.1
1,950,844 - DZA65_RS09245 0.62 -0.7
1,950,844 - DZA65_RS09245 0.62 -0.4
1,950,844 - DZA65_RS09245 0.62 -0.3
1,950,844 - DZA65_RS09245 0.62 +0.1
1,950,844 - DZA65_RS09245 0.62 +2.0
1,950,844 - DZA65_RS09245 0.62 +0.3
1,951,131 + DZA65_RS09245 0.83 +0.5
1,951,134 + DZA65_RS09245 0.83 +0.9
1,951,135 - DZA65_RS09245 0.83 +0.6
1,951,301 + +1.0
1,951,302 - -1.4
1,951,388 + +1.3
1,951,388 + -2.3
1,951,388 + -0.1
1,951,388 + -0.9
1,951,388 + -1.5
1,951,389 - +0.6
1,951,389 - -0.0
1,951,389 - +0.5
1,951,389 - -1.0
1,951,389 - -0.2
1,951,393 + -0.4
1,951,518 + DZA65_RS09250 0.16 +0.7
1,951,519 - DZA65_RS09250 0.17 +0.5
1,951,519 - DZA65_RS09250 0.17 -0.9
1,951,603 - DZA65_RS09250 0.26 +0.5
1,951,666 + DZA65_RS09250 0.33 +0.6
1,951,666 + DZA65_RS09250 0.33 +1.1
1,951,666 + DZA65_RS09250 0.33 +1.8
1,951,667 - DZA65_RS09250 0.33 +0.6
1,951,667 - DZA65_RS09250 0.33 +1.5
1,951,667 - DZA65_RS09250 0.33 +0.5
1,951,667 - DZA65_RS09250 0.33 +0.9
1,951,667 - DZA65_RS09250 0.33 -1.1
1,951,744 + DZA65_RS09250 0.42 +0.2
1,951,744 + DZA65_RS09250 0.42 +0.8
1,951,745 - DZA65_RS09250 0.42 +0.1
1,951,817 + DZA65_RS09250 0.50 +0.7
1,951,852 - DZA65_RS09250 0.54 +1.2
1,951,852 - DZA65_RS09250 0.54 +0.5
1,951,897 + DZA65_RS09250 0.59 -0.2
1,951,898 - DZA65_RS09250 0.59 -0.7
1,951,898 - DZA65_RS09250 0.59 +0.1
1,951,898 - +0.5
1,951,963 + DZA65_RS09250 0.67 +0.3
1,951,964 - DZA65_RS09250 0.67 -0.9
1,951,964 - DZA65_RS09250 0.67 -0.9
1,951,964 - DZA65_RS09250 0.67 -0.5
1,952,020 + DZA65_RS09250 0.73 +0.1
1,952,020 + DZA65_RS09250 0.73 -1.9
1,952,021 - DZA65_RS09250 0.73 +0.7
1,952,021 - DZA65_RS09250 0.73 +0.6
1,952,044 + DZA65_RS09250 0.76 -0.7
1,952,116 + DZA65_RS09250 0.84 -0.4
1,952,116 + DZA65_RS09250 0.84 +0.9
1,952,117 - DZA65_RS09250 0.84 +0.5
1,952,174 + -0.6
1,952,217 + +1.0
1,952,224 + -0.5
1,952,224 + +2.0
1,952,225 - -0.4
1,952,225 - +0.8
1,952,225 - -0.7
1,952,225 - +0.7
1,952,225 - +0.2
1,952,225 - +0.5
1,952,225 - +1.1
1,952,242 + +1.1
1,952,242 + -0.5
1,952,243 - -1.1
1,952,243 - +0.5
1,952,254 + +0.6
1,952,254 + -0.8
1,952,254 + +1.0
1,952,255 - -0.3
1,952,255 - +0.8
1,952,328 + +1.6
1,952,328 + -1.2
1,952,329 - -1.1
1,952,329 - +0.2
1,952,329 - +0.8
1,952,351 + -1.9
1,952,352 - +1.5
1,952,352 - +0.0
1,952,354 + +0.7
1,952,354 + -0.9
1,952,354 + -2.3
1,952,355 - +0.5
1,952,355 - +0.3
1,952,355 - +0.8
1,952,624 + DZA65_RS09255 0.36 -0.1
1,952,624 + DZA65_RS09255 0.36 +0.5
1,952,624 + DZA65_RS09255 0.36 +0.7
1,952,625 - DZA65_RS09255 0.36 +1.6
1,952,681 + DZA65_RS09255 0.42 +0.5
1,952,682 - DZA65_RS09255 0.42 +0.5
1,952,682 - DZA65_RS09255 0.42 -0.3
1,952,683 + DZA65_RS09255 0.42 -0.3
1,952,751 + DZA65_RS09255 0.49 +1.3
1,952,846 + DZA65_RS09255 0.58 -1.3
1,952,846 + DZA65_RS09255 0.58 +1.0
1,952,846 + DZA65_RS09255 0.58 +1.0
1,952,846 + DZA65_RS09255 0.58 +0.5
1,952,846 + DZA65_RS09255 0.58 +0.2
1,952,846 + DZA65_RS09255 0.58 +0.2
1,952,847 - DZA65_RS09255 0.58 +0.5
1,952,847 - DZA65_RS09255 0.58 -0.4
1,952,847 - DZA65_RS09255 0.58 -0.9
1,953,102 - DZA65_RS09255 0.84 +0.0
1,953,102 - DZA65_RS09255 0.84 -0.3
1,953,102 - DZA65_RS09255 0.84 -0.6
1,953,102 - DZA65_RS09255 0.84 -0.1
1,953,121 + DZA65_RS09255 0.86 +1.0
1,953,122 - DZA65_RS09255 0.86 -0.4
1,953,164 + DZA65_RS09255 0.90 +0.3
1,953,165 - -0.9
1,953,165 - +1.0

Or see this region's nucleotide sequence