Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08585

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,810,999	-				-0.9
1,811,004	+				-0.5
1,811,004	+				-0.4
1,811,004	+				-1.3
1,811,004	+				-0.1
1,811,004	+				-0.8
1,811,004	+				-1.5
1,811,005	-				-0.1
1,811,005	-				-0.2
1,811,005	-				+1.1
1,811,005	-				-0.2
1,811,127	+				+0.5
1,811,127	+				-0.6
1,811,127	+				-1.5
1,811,128	-				-0.7
1,811,128	-				+0.5
1,811,132	-				+0.5
1,811,132	-				+1.8
1,811,132	-				+0.8
1,811,132	-				-1.2
1,811,191	+				+0.3
1,811,191	+				-1.0
1,811,191	+				-1.1
1,811,191	+				+0.8
1,811,191	+				-1.1
1,811,191	+				-0.2
1,811,192	-				-0.2
1,811,192	-				+2.5
1,811,192	-				+0.2
1,811,192	-				-1.8
1,811,192	-				+0.9
1,811,192	-				+0.1
1,811,324	-		DZA65_RS08580	0.23	-0.2
1,811,344	+		DZA65_RS08580	0.25	-2.5
1,811,344	+		DZA65_RS08580	0.25	+0.5
1,811,344	+		DZA65_RS08580	0.25	-2.8
1,811,345	-		DZA65_RS08580	0.26	-1.5
1,811,345	-		DZA65_RS08580	0.26	+0.3
1,811,345	-		DZA65_RS08580	0.26	+0.2
1,811,431	+		DZA65_RS08580	0.37	-1.1
1,811,432	-		DZA65_RS08580	0.37	+0.4
1,811,442	+		DZA65_RS08580	0.38	+0.3
1,811,442	+		DZA65_RS08580	0.38	-1.2
1,811,442	+		DZA65_RS08580	0.38	+3.5
1,811,443	-		DZA65_RS08580	0.38	-0.0
1,811,443	-		DZA65_RS08580	0.38	-0.9
1,811,443	-		DZA65_RS08580	0.38	-0.5
1,811,443	-		DZA65_RS08580	0.38	+0.4
1,811,617	+		DZA65_RS08580	0.61	+0.8
1,811,617	+		DZA65_RS08580	0.61	+0.5
1,811,617	+		DZA65_RS08580	0.61	-0.4
1,811,618	-		DZA65_RS08580	0.61	+0.1
1,811,618	-		DZA65_RS08580	0.61	-0.6
1,811,618	-		DZA65_RS08580	0.61	-1.3
1,811,618	-		DZA65_RS08580	0.61	+2.2
1,811,790	+		DZA65_RS08580	0.83	+1.0
1,811,790	+		DZA65_RS08580	0.83	+0.9
1,811,790	+		DZA65_RS08580	0.83	-0.3
1,811,858	-				+0.1
1,811,863	+				+0.5
1,811,864	-				+0.8
1,811,871	-				+0.4
1,811,912	+				+0.5
1,811,912	+				+1.5
1,811,912	+				-1.3
1,811,912	+				-0.6
1,811,912	+				+1.7
1,811,913	-				-0.5
1,811,915	+				-1.2
1,811,915	+				-1.3
1,811,915	+				+0.1
1,811,916	-				-1.5
1,811,916	-				-0.5
1,811,920	+				+1.0
1,811,920	+				-0.5
1,811,921	-				-0.5
1,811,931	+				-1.8
1,811,931	+				+0.1
1,811,931	+				+0.3
1,811,931	+				-1.6
1,811,931	+				+0.5
1,811,931	+				-0.6
1,811,931	+				-0.1
1,811,932	-				+1.5
1,811,932	-				-1.3
1,811,932	-				+1.0
1,811,932	-				+0.3
1,812,317	-		DZA65_RS08585	0.14	-0.6
1,812,564	+		DZA65_RS08585	0.24	-0.9
1,812,831	+		DZA65_RS08585	0.34	-0.6
1,812,831	+		DZA65_RS08585	0.34	+0.5
1,812,831	+		DZA65_RS08585	0.34	-0.2
1,812,831	+		DZA65_RS08585	0.34	+0.4
1,812,831	+		DZA65_RS08585	0.34	-0.5
1,812,831	+		DZA65_RS08585	0.34	-2.9
1,812,832	-		DZA65_RS08585	0.34	-0.7
1,812,832	-		DZA65_RS08585	0.34	-0.7
1,812,832	-		DZA65_RS08585	0.34	+0.8
1,812,832	-		DZA65_RS08585	0.34	-1.1
1,812,832	-		DZA65_RS08585	0.34	+0.5
1,812,832	-		DZA65_RS08585	0.34	-0.2
1,812,943	+		DZA65_RS08585	0.38	-0.5
1,812,943	+		DZA65_RS08585	0.38	+0.5
1,812,944	-		DZA65_RS08585	0.38	+0.5
1,812,944	-		DZA65_RS08585	0.38	+0.9
1,812,944	-		DZA65_RS08585	0.38	+1.5
1,812,952	+		DZA65_RS08585	0.38	+1.2
1,812,952	+		DZA65_RS08585	0.38	-0.5
1,812,952	+		DZA65_RS08585	0.38	+0.5
1,812,952	+		DZA65_RS08585	0.38	-2.8
1,812,952	+		DZA65_RS08585	0.38	+0.5
1,812,952	+		DZA65_RS08585	0.38	-0.2
1,812,953	-		DZA65_RS08585	0.38	+0.2
1,812,953	-		DZA65_RS08585	0.38	-0.1
1,812,953	-		DZA65_RS08585	0.38	-0.2
1,812,953	-		DZA65_RS08585	0.38	-0.3
1,812,953	-		DZA65_RS08585	0.38	-0.5
1,812,953	-		DZA65_RS08585	0.38	+1.0
1,812,953	-		DZA65_RS08585	0.38	-0.5
1,813,057	+		DZA65_RS08585	0.42	+0.2
1,813,057	+		DZA65_RS08585	0.42	+0.7
1,813,057	+		DZA65_RS08585	0.42	+1.0
1,813,057	+		DZA65_RS08585	0.42	-1.2
1,813,057	+		DZA65_RS08585	0.42	+0.8
1,813,058	-		DZA65_RS08585	0.42	+0.2
1,813,058	-		DZA65_RS08585	0.42	+0.8
1,813,126	+		DZA65_RS08585	0.45	-0.5
1,813,126	+		DZA65_RS08585	0.45	-1.1
1,813,127	-		DZA65_RS08585	0.45	+0.4
1,813,166	+		DZA65_RS08585	0.47	+0.3
1,813,166	+		DZA65_RS08585	0.47	+1.3
1,813,166	+		DZA65_RS08585	0.47	-0.7
1,813,167	-		DZA65_RS08585	0.47	+2.4
1,813,555	-		DZA65_RS08585	0.61	-0.5
1,813,555	-		DZA65_RS08585	0.61	-1.6
1,813,555	-		DZA65_RS08585	0.61	+0.4
1,813,555	-		DZA65_RS08585	0.61	-0.3
1,813,651	+		DZA65_RS08585	0.65	-0.7
1,813,651	+		DZA65_RS08585	0.65	+1.8
1,813,840	+		DZA65_RS08585	0.72	+0.5
1,813,840	+		DZA65_RS08585	0.72	+0.5
1,813,840	+		DZA65_RS08585	0.72	+0.1
1,813,841	-		DZA65_RS08585	0.72	+0.3
1,813,841	-		DZA65_RS08585	0.72	-0.8
1,813,841	-		DZA65_RS08585	0.72	-1.3
1,813,895	+		DZA65_RS08585	0.74	+0.5
1,813,896	-		DZA65_RS08585	0.74	+0.8
1,813,915	+		DZA65_RS08585	0.75	-0.7
1,813,915	+		DZA65_RS08585	0.75	+0.2
1,813,916	-		DZA65_RS08585	0.75	+0.3
1,814,029	+		DZA65_RS08585	0.79	+0.2
1,814,029	+		DZA65_RS08585	0.79	+1.4
1,814,029	+		DZA65_RS08585	0.79	+0.8
1,814,029	+		DZA65_RS08585	0.79	-2.9
1,814,029	+				+1.7
1,814,030	-		DZA65_RS08585	0.79	-0.1
1,814,030	-		DZA65_RS08585	0.79	-0.5
1,814,030	-		DZA65_RS08585	0.79	-1.1
1,814,136	+		DZA65_RS08585	0.83	+0.9
1,814,273	-		DZA65_RS08585	0.89	-0.5
1,814,725	+				+3.0
1,814,726	-				+0.9
1,814,799	+		DZA65_RS08590	0.14	-0.8
1,814,799	+		DZA65_RS08590	0.14	-0.2
1,814,799	+		DZA65_RS08590	0.14	-0.8
1,814,799	+		DZA65_RS08590	0.14	+1.0
1,814,799	+		DZA65_RS08590	0.14	+0.2
1,814,799	+		DZA65_RS08590	0.14	-0.1
1,814,800	-		DZA65_RS08590	0.14	+0.5
1,814,800	-		DZA65_RS08590	0.14	-1.1
1,814,800	-		DZA65_RS08590	0.14	-1.6
1,814,800	-		DZA65_RS08590	0.14	+0.2
1,814,800	-		DZA65_RS08590	0.14	-0.3
1,814,800	-		DZA65_RS08590	0.14	+1.8
1,814,800	-		DZA65_RS08590	0.14	-1.5
1,814,841	+		DZA65_RS08590	0.17	+0.7
1,814,842	-		DZA65_RS08590	0.17	-0.3
1,814,913	+		DZA65_RS08590	0.22	-0.6
1,814,913	+		DZA65_RS08590	0.22	+0.0
1,814,914	-		DZA65_RS08590	0.22	+0.8