Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08355

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,760,781	+		DZA65_RS08350	0.56	-0.5
1,760,781	+		DZA65_RS08350	0.56	-1.8
1,760,781	+		DZA65_RS08350	0.56	+0.1
1,760,782	-		DZA65_RS08350	0.56	+0.7
1,760,782	-		DZA65_RS08350	0.56	+0.2
1,760,782	-		DZA65_RS08350	0.56	+0.9
1,760,796	+		DZA65_RS08350	0.57	-1.2
1,760,888	+		DZA65_RS08350	0.63	-0.1
1,761,009	-		DZA65_RS08350	0.70	+0.4
1,761,009	-		DZA65_RS08350	0.70	-0.2
1,761,086	+		DZA65_RS08350	0.75	+0.5
1,761,086	+		DZA65_RS08350	0.75	-1.5
1,761,087	-		DZA65_RS08350	0.75	-0.6
1,761,087	-		DZA65_RS08350	0.75	+0.0
1,761,087	-		DZA65_RS08350	0.75	-0.1
1,761,130	+		DZA65_RS08350	0.78	+0.5
1,761,143	-		DZA65_RS08350	0.78	+0.9
1,761,226	-		DZA65_RS08350	0.84	-0.3
1,761,281	+		DZA65_RS08350	0.87	-0.1
1,761,281	+		DZA65_RS08350	0.87	-0.8
1,761,282	-		DZA65_RS08350	0.87	-0.1
1,761,282	-		DZA65_RS08350	0.87	+1.5
1,761,296	+		DZA65_RS08350	0.88	+2.1
1,761,296	+		DZA65_RS08350	0.88	-0.7
1,761,296	+		DZA65_RS08350	0.88	-0.9
1,761,297	-		DZA65_RS08350	0.88	-2.1
1,761,297	-		DZA65_RS08350	0.88	-1.6
1,761,297	-		DZA65_RS08350	0.88	+0.5
1,761,366	+				-0.8
1,761,366	+				-1.1
1,761,366	+				-0.3
1,761,366	+				-1.5
1,761,366	+				-0.1
1,761,367	-				-2.3
1,761,367	-				+0.6
1,761,367	-				-0.3
1,761,367	-				-0.5
1,761,369	+				-0.4
1,761,369	+				-1.1
1,761,369	+				-0.2
1,761,369	+				-1.1
1,761,370	-				+0.5
1,761,370	-				+1.1
1,761,370	-				+0.1
1,761,370	-				-0.5
1,761,370	-				-0.6
1,761,464	+				-0.5
1,761,464	+				-0.7
1,761,464	+				-1.1
1,761,464	+				+0.1
1,761,464	+				+0.1
1,761,464	+				+0.7
1,761,464	+				+1.3
1,761,464	+				-0.3
1,761,464	+				+1.5
1,761,464	+				-0.8
1,761,464	+				-1.3
1,761,464	+				-1.3
1,761,464	+				-0.3
1,761,464	+				+0.2
1,761,465	-				-0.5
1,761,465	-				-0.2
1,761,465	-				+2.0
1,761,465	-				+0.9
1,761,465	-				+0.3
1,761,465	-				+0.5
1,761,465	-				+1.3
1,761,465	-				+0.3
1,761,465	-				-0.5
1,761,465	-				-1.8
1,761,465	-				-0.8
1,761,482	+				-0.0
1,761,483	-				-2.8
1,761,499	-				-1.1
1,761,499	-				-1.6
1,761,563	+				-1.8
1,761,563	+				-0.0
1,761,593	+				-1.1
1,761,593	+				+0.5
1,761,594	-				+1.3
1,761,624	+				+1.3
1,761,625	-				-0.1
1,761,625	-				+1.2
1,761,686	-				-1.0
1,761,728	+				-0.5
1,761,728	+				+0.3
1,761,728	+				-0.3
1,761,728	+				-0.6
1,761,729	-				+1.2
1,761,780	-				-1.3
1,761,927	+		DZA65_RS08355	0.18	+1.9
1,761,927	+		DZA65_RS08355	0.18	+0.0
1,761,927	+		DZA65_RS08355	0.18	-0.3
1,761,928	-		DZA65_RS08355	0.18	+0.3
1,761,928	-		DZA65_RS08355	0.18	+1.1
1,761,928	-		DZA65_RS08355	0.18	-1.8
1,761,928	-		DZA65_RS08355	0.18	-0.1
1,761,928	-		DZA65_RS08355	0.18	-0.1
1,761,928	-		DZA65_RS08355	0.18	-0.5
1,761,928	-		DZA65_RS08355	0.18	-1.6
1,761,929	+		DZA65_RS08355	0.18	-0.6
1,761,929	+		DZA65_RS08355	0.18	-2.3
1,761,930	-		DZA65_RS08355	0.18	+0.8
1,761,971	+		DZA65_RS08355	0.22	-0.1
1,761,972	-		DZA65_RS08355	0.22	-0.9
1,761,972	-		DZA65_RS08355	0.22	-2.3
1,762,050	+		DZA65_RS08355	0.29	+0.6
1,762,051	-		DZA65_RS08355	0.29	-2.8
1,762,108	+		DZA65_RS08355	0.35	-1.8
1,762,109	-		DZA65_RS08355	0.35	+1.3
1,762,109	-		DZA65_RS08355	0.35	-0.0
1,762,135	-		DZA65_RS08355	0.37	-2.1
1,762,135	-		DZA65_RS08355	0.37	+0.7
1,762,169	+		DZA65_RS08355	0.40	+0.3
1,762,170	-		DZA65_RS08355	0.40	-0.8
1,762,203	+		DZA65_RS08355	0.43	+0.4
1,762,204	-		DZA65_RS08355	0.43	-0.6
1,762,388	+		DZA65_RS08355	0.60	+0.2
1,762,388	+		DZA65_RS08355	0.60	-0.9
1,762,389	-		DZA65_RS08355	0.60	-2.7
1,762,389	-		DZA65_RS08355	0.60	+0.5
1,762,391	+		DZA65_RS08355	0.60	-0.1
1,762,391	+		DZA65_RS08355	0.60	+0.5
1,762,391	+		DZA65_RS08355	0.60	-0.1
1,762,391	+		DZA65_RS08355	0.60	+1.5
1,762,391	+		DZA65_RS08355	0.60	-1.3
1,762,392	-		DZA65_RS08355	0.60	-0.3
1,762,392	-		DZA65_RS08355	0.60	+0.4
1,762,392	-		DZA65_RS08355	0.60	-2.3
1,762,392	-		DZA65_RS08355	0.60	-0.3
1,762,392	-		DZA65_RS08355	0.60	+0.1
1,762,424	+		DZA65_RS08355	0.63	+0.9
1,762,424	+		DZA65_RS08355	0.63	+0.0
1,762,425	-		DZA65_RS08355	0.63	-1.1
1,762,458	-		DZA65_RS08355	0.66	-0.6
1,762,548	+		DZA65_RS08355	0.75	-0.7
1,762,548	+		DZA65_RS08355	0.75	-1.1
1,762,548	+		DZA65_RS08355	0.75	+1.4
1,762,548	+		DZA65_RS08355	0.75	+1.8
1,762,548	+		DZA65_RS08355	0.75	-0.5
1,762,549	-		DZA65_RS08355	0.75	-0.8
1,762,549	-		DZA65_RS08355	0.75	-1.1
1,762,549	-		DZA65_RS08355	0.75	+0.4
1,762,549	-		DZA65_RS08355	0.75	+0.5
1,762,549	-		DZA65_RS08355	0.75	-1.4
1,762,549	-		DZA65_RS08355	0.75	-2.1
1,762,549	-		DZA65_RS08355	0.75	+0.1
1,762,551	-		DZA65_RS08355	0.75	-1.5
1,762,551	-		DZA65_RS08355	0.75	+1.7
1,762,591	+		DZA65_RS08355	0.79	+1.1
1,762,591	+		DZA65_RS08355	0.79	-0.5
1,762,592	-		DZA65_RS08355	0.79	-1.8
1,762,592	-		DZA65_RS08355	0.79	+0.5
1,762,592	-		DZA65_RS08355	0.79	-0.1
1,762,705	+		DZA65_RS08355	0.89	-0.5
1,762,800	+				-0.2
1,762,800	+				+0.9
1,762,825	-				-0.1
1,762,825	-				+0.5
1,762,825	-				-0.1
1,762,832	+				+0.3
1,762,835	-				+0.7
1,762,835	-				-0.2
1,762,835	-				+2.9
1,762,850	+				+1.2
1,762,850	+				-2.1
1,762,850	+				-1.8
1,762,850	+				-0.5
1,762,851	-				+0.9
1,762,851	-				-1.3
1,762,851	-				+1.5
1,762,851	-				-1.5
1,762,926	+		DZA65_RS08360	0.10	-1.6
1,762,927	-		DZA65_RS08360	0.10	-0.8
1,762,981	+		DZA65_RS08360	0.16	-0.1
1,762,981	+		DZA65_RS08360	0.16	-0.2
1,762,982	-		DZA65_RS08360	0.16	-1.6
1,762,982	-		DZA65_RS08360	0.16	-0.1
1,763,063	-		DZA65_RS08360	0.25	+0.1
1,763,078	+		DZA65_RS08360	0.27	+1.0
1,763,078	+		DZA65_RS08360	0.27	-1.5
1,763,078	+		DZA65_RS08360	0.27	-0.0
1,763,078	+		DZA65_RS08360	0.27	-0.3
1,763,078	+		DZA65_RS08360	0.27	-0.8
1,763,078	+		DZA65_RS08360	0.27	+0.5
1,763,078	+		DZA65_RS08360	0.27	-0.5
1,763,079	-		DZA65_RS08360	0.27	-2.1
1,763,079	-		DZA65_RS08360	0.27	-0.1
1,763,079	-		DZA65_RS08360	0.27	+0.5
1,763,079	-		DZA65_RS08360	0.27	+0.0
1,763,079	-		DZA65_RS08360	0.27	-2.3
1,763,079	-		DZA65_RS08360	0.27	+0.7
1,763,079	-		DZA65_RS08360	0.27	+0.0
1,763,079	-		DZA65_RS08360	0.27	+1.0
1,763,079	-		DZA65_RS08360	0.27	-2.1
1,763,162	+		DZA65_RS08360	0.36	-2.1
1,763,162	+		DZA65_RS08360	0.36	-0.1
1,763,163	-		DZA65_RS08360	0.36	-0.3
1,763,282	-		DZA65_RS08360	0.49	-0.3
1,763,345	-		DZA65_RS08360	0.55	-1.3
1,763,345	-				-1.8
1,763,381	+		DZA65_RS08360	0.59	-0.3
1,763,382	-		DZA65_RS08360	0.59	+1.2
1,763,382	-		DZA65_RS08360	0.59	+0.4
1,763,382	-		DZA65_RS08360	0.59	-1.5
1,763,541	+		DZA65_RS08360	0.77	-1.1
1,763,541	+		DZA65_RS08360	0.77	+0.1
1,763,541	+		DZA65_RS08360	0.77	-1.2
1,763,541	+		DZA65_RS08360	0.77	-1.2
1,763,542	-		DZA65_RS08360	0.77	-1.7
1,763,542	-		DZA65_RS08360	0.77	+1.5
1,763,743	+				+1.3
1,763,743	+				+0.7
1,763,743	+				+1.7
1,763,743	+				-0.8
1,763,743	+				-1.8
1,763,744	-				-1.5
1,763,744	-				-0.1