Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08310

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,750,634	+		DZA65_RS08305	0.14	+0.8
1,750,634	+				-0.2
1,750,635	-		DZA65_RS08305	0.14	+0.2
1,750,871	+		DZA65_RS08305	0.39	+0.5
1,750,872	-		DZA65_RS08305	0.39	-0.4
1,750,879	+		DZA65_RS08305	0.40	+0.5
1,750,879	+		DZA65_RS08305	0.40	+0.2
1,750,880	-		DZA65_RS08305	0.40	+1.5
1,750,880	-		DZA65_RS08305	0.40	+2.1
1,750,880	-		DZA65_RS08305	0.40	+2.5
1,750,880	-		DZA65_RS08305	0.40	+0.2
1,750,880	-		DZA65_RS08305	0.40	-1.1
1,750,880	-		DZA65_RS08305	0.40	+0.7
1,750,973	+		DZA65_RS08305	0.50	-0.3
1,750,974	-		DZA65_RS08305	0.50	+0.9
1,751,013	+		DZA65_RS08305	0.54	+1.5
1,751,013	+		DZA65_RS08305	0.54	+0.0
1,751,020	-		DZA65_RS08305	0.55	+1.4
1,751,020	-		DZA65_RS08305	0.55	-2.1
1,751,094	-		DZA65_RS08305	0.63	+1.7
1,751,412	+				-0.6
1,751,412	+				-0.3
1,751,412	+				+0.1
1,751,412	+				-2.3
1,751,413	-				-0.2
1,751,413	-				+0.1
1,751,422	+				+0.1
1,751,422	+				-1.3
1,751,423	-				-0.1
1,751,423	-				+0.6
1,751,423	-				-0.6
1,751,457	+				-0.7
1,751,457	+				-0.1
1,751,492	+				-0.9
1,751,519	+				-1.3
1,751,520	-				-1.5
1,751,520	-				+0.5
1,751,537	+				+1.5
1,751,537	+				+0.6
1,751,538	-				-0.8
1,751,550	+				-0.3
1,751,550	+				-2.1
1,751,550	+				+0.0
1,751,550	+				+0.9
1,751,550	+				-1.1
1,751,550	+				+0.3
1,751,550	+				-0.7
1,751,550	+				+0.5
1,751,550	+				-1.1
1,751,550	+				-0.0
1,751,550	+				+0.8
1,751,550	+				-0.5
1,751,550	+				+0.1
1,751,550	+				-1.2
1,751,551	-				-0.1
1,751,551	-				-0.3
1,751,551	-				+0.6
1,751,551	-				-0.4
1,751,551	-				-0.1
1,751,551	-				+0.7
1,751,551	-				-0.6
1,751,551	-				+0.3
1,751,551	-				+0.5
1,751,551	-				-1.1
1,751,551	-				+0.0
1,751,551	-				-0.5
1,751,551	-				+1.1
1,751,551	-				-0.0
1,751,551	-				+0.4
1,751,551	-				+0.2
1,751,551	-				-0.7
1,751,551	-				+1.1
1,751,552	+				-1.3
1,751,552	+				-0.1
1,751,552	+				-0.9
1,751,552	+				-2.1
1,751,552	+				-1.3
1,751,552	+				-0.5
1,751,552	+				-1.1
1,751,552	+				+1.1
1,751,552	+				-0.8
1,751,552	+				-0.2
1,751,552	+				+0.8
1,751,552	+				-2.1
1,751,552	+				-0.5
1,751,552	+				+0.2
1,751,552	+				-0.1
1,751,552	+				-1.6
1,751,552	+				-0.8
1,751,552	+				+0.6
1,751,553	-				-0.2
1,751,553	-				-1.6
1,751,553	-				+0.1
1,751,553	-				-0.2
1,751,553	-				+0.5
1,751,553	-				-0.6
1,751,553	-				+0.3
1,751,553	-				-0.8
1,751,553	-				-1.3
1,751,553	-				+0.9
1,751,553	-				-0.5
1,751,553	-				+0.2
1,751,553	-				+0.2
1,751,553	-				+1.0
1,751,553	-				-0.3
1,751,553	-				-1.1
1,751,553	-				-3.2
1,751,553	-				-1.1
1,751,553	-				-1.1
1,751,553	-				-0.5
1,751,553	-				-0.7
1,751,553	-				-0.2
1,751,609	+				+0.3
1,751,610	-				-1.3
1,751,610	-				-0.3
1,751,610	-				-0.1
1,751,610	-				-1.1
1,751,615	+				+0.3
1,751,615	+				-0.9
1,751,616	-				+0.9
1,751,616	-				-2.1
1,751,616	-				-0.1
1,751,616	-				+0.1
1,751,634	-				-0.1
1,751,779	-		DZA65_RS08310	0.22	+0.1
1,752,000	+		DZA65_RS08310	0.50	-1.5
1,752,001	-		DZA65_RS08310	0.51	-0.5
1,752,001	-		DZA65_RS08310	0.51	+0.5
1,752,001	-		DZA65_RS08310	0.51	+0.2
1,752,001	-		DZA65_RS08310	0.51	-0.2
1,752,001	-		DZA65_RS08310	0.51	-0.3
1,752,039	-		DZA65_RS08310	0.55	+0.0
1,752,225	+		DZA65_RS08310	0.79	+0.2
1,752,245	+		DZA65_RS08310	0.82	+0.5
1,752,245	+		DZA65_RS08310	0.82	-0.1
1,752,245	+		DZA65_RS08310	0.82	+0.0
1,752,245	+		DZA65_RS08310	0.82	-0.3
1,752,245	+		DZA65_RS08310	0.82	+0.9
1,752,245	+		DZA65_RS08310	0.82	-0.9
1,752,245	+		DZA65_RS08310	0.82	+0.4
1,752,245	+		DZA65_RS08310	0.82	-0.9
1,752,245	+		DZA65_RS08310	0.82	-0.3
1,752,245	+		DZA65_RS08310	0.82	+0.0
1,752,246	-		DZA65_RS08310	0.82	-1.3
1,752,246	-		DZA65_RS08310	0.82	-0.4
1,752,246	-		DZA65_RS08310	0.82	-1.0
1,752,246	-		DZA65_RS08310	0.82	-0.5
1,752,246	-		DZA65_RS08310	0.82	+0.5
1,752,246	-				+1.1
1,752,246	-		DZA65_RS08310	0.82	-0.6
1,752,246	-		DZA65_RS08310	0.82	-0.2
1,752,246	-		DZA65_RS08310	0.82	-0.9
1,752,246	-		DZA65_RS08310	0.82	+1.0
1,752,246	-		DZA65_RS08310	0.82	+0.2
1,752,246	-		DZA65_RS08310	0.82	-1.5
1,752,246	-		DZA65_RS08310	0.82	-0.8
1,752,246	-		DZA65_RS08310	0.82	-0.9
1,752,246	-		DZA65_RS08310	0.82	+0.5
1,752,248	+		DZA65_RS08310	0.82	+0.2
1,752,248	+		DZA65_RS08310	0.82	-1.3
1,752,248	+		DZA65_RS08310	0.82	-1.8
1,752,249	-		DZA65_RS08310	0.82	-0.5
1,752,249	-				+1.5
1,752,249	-		DZA65_RS08310	0.82	-2.8
1,752,249	-		DZA65_RS08310	0.82	+0.4
1,752,275	+		DZA65_RS08310	0.86	-0.8
1,752,275	+		DZA65_RS08310	0.86	-1.2
1,752,275	+		DZA65_RS08310	0.86	+0.7
1,752,275	+		DZA65_RS08310	0.86	-0.5
1,752,276	-		DZA65_RS08310	0.86	+0.5
1,752,276	-		DZA65_RS08310	0.86	-0.8
1,752,276	-		DZA65_RS08310	0.86	-2.1
1,752,276	-		DZA65_RS08310	0.86	-1.1
1,752,360	+				+0.1
1,752,384	+				-1.3
1,752,385	-				-0.9
1,752,385	-				-0.5
1,752,390	+				-0.7
1,752,390	+				-0.5
1,752,390	+				-1.5
1,752,391	-				+0.5
1,752,391	-				+1.3
1,752,471	+				-1.0
1,752,472	-				-0.3
1,752,489	+				-0.7
1,752,489	+				-0.5
1,752,490	-				-0.5
1,752,490	-				-1.0
1,752,490	-				-0.8
1,752,492	+				-2.1
1,752,492	+				+0.1
1,752,492	+				+0.5
1,752,492	+				-0.3
1,752,492	+				-1.8
1,752,492	+				-1.1
1,752,492	+				-1.2
1,752,492	+				+0.3
1,752,493	-				-1.5
1,752,493	-				-0.1
1,752,493	-				-2.1
1,752,493	-				-1.4
1,752,493	-				+0.7
1,752,493	-				+0.7
1,752,493	-				-1.1
1,752,493	-				+0.1
1,752,493	-				-0.8
1,752,493	-				-0.3
1,752,493	-				+1.5
1,752,493	-				+0.3
1,752,575	+				+0.3
1,752,575	+				-1.8
1,752,575	+				-0.7
1,752,575	+				-1.7
1,752,576	-				+1.0
1,752,576	-				-0.4
1,752,576	-				+0.5
1,752,576	-				-0.5
1,752,576	-				+0.5
1,752,576	-				+1.5
1,752,593	+				-0.6
1,752,593	+				+0.0
1,752,594	-				-0.5
1,752,594	-				+0.0
1,752,594	-				+3.5
1,752,598	+				-0.1
1,752,598	+				+0.1
1,752,598	+				-0.5
1,752,598	+				+0.3
1,752,599	-				-0.5
1,752,599	-				-0.9
1,752,621	+				-0.8
1,752,621	+				-1.1
1,752,621	+				+0.9
1,752,621	+				+1.1
1,752,624	+				-0.0
1,752,624	+				-1.1
1,752,682	-				+0.1
1,752,774	+				-2.4
1,752,774	+				+1.7
1,752,775	-				-0.1
1,752,822	+				+0.5
1,752,914	+		DZA65_RS08315	0.15	+1.4
1,752,915	-		DZA65_RS08315	0.15	-0.3
1,753,043	+		DZA65_RS08315	0.27	-0.0
1,753,043	+		DZA65_RS08315	0.27	-0.7
1,753,044	-		DZA65_RS08315	0.27	-1.1
1,753,066	+		DZA65_RS08315	0.29	+0.5
1,753,067	-		DZA65_RS08315	0.29	-0.1
1,753,067	-		DZA65_RS08315	0.29	+1.8
1,753,161	+		DZA65_RS08315	0.38	+1.0
1,753,240	+		DZA65_RS08315	0.45	-0.8
1,753,240	+		DZA65_RS08315	0.45	-1.0
1,753,240	+		DZA65_RS08315	0.45	-0.5
1,753,255	-		DZA65_RS08315	0.46	-0.3
1,753,333	+		DZA65_RS08315	0.54	-0.5
1,753,334	-		DZA65_RS08315	0.54	-0.7
1,753,334	-		DZA65_RS08315	0.54	-1.2
1,753,334	-		DZA65_RS08315	0.54	+0.3