Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08165

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,705,635	-				-1.1
1,705,635	-				-0.8
1,705,635	-				-0.1
1,706,026	-				+0.2
1,706,044	-				+1.1
1,706,044	-				+0.2
1,706,085	-				-1.1
1,706,142	+		DZA65_RS08160	0.24	-0.5
1,706,142	+		DZA65_RS08160	0.24	-2.6
1,706,166	-		DZA65_RS08160	0.33	-0.3
1,706,190	+		DZA65_RS08160	0.42	-0.9
1,706,191	-		DZA65_RS08160	0.43	-1.6
1,706,191	-		DZA65_RS08160	0.43	-0.3
1,706,191	-		DZA65_RS08160	0.43	-0.7
1,706,267	-		DZA65_RS08160	0.72	-0.2
1,706,279	+		DZA65_RS08160	0.76	+0.4
1,706,336	-				-1.1
1,706,336	-				+0.5
1,706,336	-				-0.1
1,706,366	+				+0.1
1,706,367	-				+1.7
1,706,378	+				+1.1
1,706,403	-				+0.3
1,706,424	+				-1.3
1,706,424	+				-1.1
1,706,424	+				-0.3
1,706,443	+				+0.5
1,706,443	+				-0.3
1,706,443	+				-0.6
1,706,444	-				-0.7
1,706,444	-				-0.1
1,706,444	-				+0.9
1,706,444	-				+0.2
1,706,444	-				+0.5
1,706,444	-				+1.7
1,706,444	-				-0.1
1,706,444	-				-0.5
1,706,451	+				+1.2
1,706,451	+				-0.6
1,706,452	-				-0.7
1,706,514	+				+0.0
1,706,522	-				-0.1
1,706,548	+				-0.9
1,706,559	+				+0.5
1,706,591	+				-0.5
1,706,591	+				-1.5
1,706,592	-				+0.1
1,706,653	+				+0.1
1,706,756	+		DZA65_RS08165	0.13	+0.1
1,706,757	-		DZA65_RS08165	0.13	+0.5
1,706,928	+		DZA65_RS08165	0.29	-0.5
1,706,928	+		DZA65_RS08165	0.29	-0.2
1,706,928	+		DZA65_RS08165	0.29	-3.1
1,706,928	+		DZA65_RS08165	0.29	+2.0
1,706,928	+		DZA65_RS08165	0.29	+1.8
1,706,929	-		DZA65_RS08165	0.29	+1.5
1,706,929	-		DZA65_RS08165	0.29	+1.5
1,706,929	-		DZA65_RS08165	0.29	+0.4
1,706,929	-		DZA65_RS08165	0.29	-0.6
1,706,929	-		DZA65_RS08165	0.29	-0.5
1,707,142	+				-1.5
1,707,142	+		DZA65_RS08165	0.49	+1.7
1,707,142	+		DZA65_RS08165	0.49	-2.1
1,707,143	-		DZA65_RS08165	0.49	-0.3
1,707,143	-		DZA65_RS08165	0.49	-0.7
1,707,143	-		DZA65_RS08165	0.49	-0.3
1,707,143	-		DZA65_RS08165	0.49	+0.4
1,707,143	-		DZA65_RS08165	0.49	+1.8
1,707,154	-		DZA65_RS08165	0.50	+2.3
1,707,367	+		DZA65_RS08165	0.71	-0.2
1,707,368	-		DZA65_RS08165	0.71	+0.5
1,707,368	-		DZA65_RS08165	0.71	-0.1
1,707,408	-		DZA65_RS08165	0.75	-0.3
1,707,408	-		DZA65_RS08165	0.75	+0.7
1,707,463	+		DZA65_RS08165	0.80	-2.3
1,707,463	+		DZA65_RS08165	0.80	+0.2
1,707,464	-		DZA65_RS08165	0.80	+0.4
1,707,464	-				-0.1
1,707,496	+		DZA65_RS08165	0.83	-0.1
1,707,496	+		DZA65_RS08165	0.83	-1.6
1,707,496	+		DZA65_RS08165	0.83	+1.1
1,707,496	+				-0.8
1,707,496	+		DZA65_RS08165	0.83	-0.5
1,707,496	+		DZA65_RS08165	0.83	-0.1
1,707,496	+		DZA65_RS08165	0.83	+0.5
1,707,497	-		DZA65_RS08165	0.83	-1.1
1,707,497	-		DZA65_RS08165	0.83	+0.8
1,707,590	+				-0.4
1,707,590	+				-1.5
1,707,651	+				+0.7
1,707,651	+				-1.8
1,707,652	-				+0.5
1,707,652	-				-1.5
1,707,652	-				+0.4
1,707,709	+				+0.3
1,707,710	-				-0.5
1,707,710	-				-0.7
1,707,716	+				-1.1
1,707,716	+				+0.8
1,707,716	+				-0.1
1,707,716	+				-0.1
1,707,716	+				+1.4
1,707,716	+				+0.5
1,707,716	+				+1.2
1,707,716	+				+0.1
1,707,716	+				+0.9
1,707,716	+				-0.8
1,707,717	-				-1.1
1,707,717	-				-0.1
1,707,717	-				+0.3
1,707,717	-				-0.3
1,707,717	-				+0.1
1,707,717	-				-2.3
1,707,717	-				+0.5
1,707,717	-				-1.2
1,707,717	-				+0.4
1,707,718	+				-0.7
1,707,718	+				-0.2
1,707,718	+				+2.0
1,707,719	-				-1.3
1,707,719	-				+0.3
1,707,719	-				+0.3
1,707,719	-				-0.5
1,707,719	-				+0.5
1,707,719	-				-0.1
1,707,719	-				-0.2
1,707,903	+				+0.9
1,707,903	+				-1.1
1,707,904	-				+0.5
1,707,904	-				+0.1
1,707,904	-				-1.6
1,707,913	+				-1.5
1,707,914	-				-2.1
1,707,914	-				-0.9
1,707,925	+				-2.3
1,707,960	+				+0.3
1,707,964	+				+0.5
1,707,964	+				-1.8
1,707,965	-				-0.3
1,707,992	+				+1.1
1,707,997	-				-1.1
1,708,017	+				-0.9
1,708,018	-				+0.8
1,708,023	+				+0.5
1,708,044	+				-1.3
1,708,093	+				-0.8
1,708,094	-				-1.8
1,708,120	+				+0.9
1,708,120	+				-0.5
1,708,121	-				-0.8
1,708,128	-				-0.4
1,708,129	+				+0.2
1,708,148	+				+1.2
1,708,149	-				-0.4
1,708,149	-				-1.9
1,708,166	+				+2.1
1,708,167	-				+0.2
1,708,217	+				-0.2
1,708,217	+				-0.3
1,708,251	+				+0.2
1,708,252	-				+0.3
1,708,252	-				-0.2
1,708,283	+				+0.4
1,708,283	+				-0.3
1,708,284	-				+0.2
1,708,293	+				+1.7
1,708,293	+				-0.7
1,708,293	+				+0.1
1,708,293	+				+0.1
1,708,294	-				-0.8
1,708,294	-				-0.8
1,708,294	-				-1.3
1,708,294	-				+1.2
1,708,294	-				+0.7
1,708,294	-				-0.5
1,708,294	-				+1.0
1,708,323	+				-1.2
1,708,323	+				+1.5
1,708,323	+				+0.5
1,708,323	+				-1.1
1,708,324	-				+0.2
1,708,324	-				-0.3
1,708,324	-				-0.9
1,708,361	+				+0.5
1,708,361	+				-2.2
1,708,362	-				-0.1
1,708,412	-				-0.3
1,708,412	-				-1.1
1,708,440	+				+1.5
1,708,440	+				-0.2
1,708,440	+				-1.1
1,708,440	+				-0.2
1,708,440	+				+0.3
1,708,440	+				+0.2
1,708,440	+				+0.7
1,708,440	+				+0.1
1,708,440	+				+0.2
1,708,440	+				-0.2
1,708,440	+				-0.7
1,708,440	+				+0.1
1,708,441	-				+0.6
1,708,441	-				-0.3
1,708,441	-				-1.8
1,708,441	-				+1.1
1,708,441	-				+0.1
1,708,441	-				+0.5
1,708,441	-				-0.2
1,708,441	-				+0.3
1,708,441	-				-0.7
1,708,442	+				-0.5
1,708,442	+				+0.9
1,708,443	-				-0.3
1,708,443	-				-0.2
1,708,443	-				+0.0
1,708,650	-		DZA65_RS08170	0.17	+0.2