Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07870

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,640,843	+				+0.6
1,640,844	-				-0.1
1,640,866	+				-0.1
1,640,867	-				+1.9
1,640,871	-				-0.4
1,640,991	+				-0.8
1,640,993	+				-0.6
1,641,009	-				+0.8
1,641,056	+				+1.3
1,641,102	+				+0.6
1,641,102	+				-0.9
1,641,102	+				-1.1
1,641,102	+				+0.4
1,641,102	+				-1.0
1,641,102	+				-1.0
1,641,102	+				+0.6
1,641,102	+				+1.2
1,641,102	+				-2.0
1,641,102	+				-1.0
1,641,102	+				-0.1
1,641,102	+				+0.6
1,641,102	+				-1.0
1,641,102	+				+0.6
1,641,102	+				-0.9
1,641,102	+				-0.5
1,641,103	-				-0.4
1,641,103	-				-1.9
1,641,103	-				+3.1
1,641,103	-				-0.4
1,641,103	-				-1.2
1,641,103	-				-1.8
1,641,103	-				+0.8
1,641,103	-				-0.8
1,641,103	-				+0.2
1,641,103	-				+0.3
1,641,103	-				+1.6
1,641,103	-				+0.6
1,641,257	+		DZA65_RS07865	0.56	+0.1
1,641,257	+		DZA65_RS07865	0.56	+0.2
1,641,257	+		DZA65_RS07865	0.56	+0.9
1,641,257	+		DZA65_RS07865	0.56	+0.4
1,641,258	-		DZA65_RS07865	0.56	+0.6
1,641,258	-		DZA65_RS07865	0.56	-0.2
1,641,258	-		DZA65_RS07865	0.56	+0.4
1,641,366	+				-0.5
1,641,367	-				-0.4
1,641,367	-				-0.4
1,641,367	-				+0.1
1,641,406	+				-0.6
1,641,407	-				-0.3
1,641,407	-				-0.2
1,641,409	-				-1.4
1,641,457	-				+0.1
1,641,481	+				-0.4
1,641,481	+				-0.6
1,641,482	-				-0.2
1,641,482	-				-1.6
1,641,581	+				+1.9
1,641,581	+				+0.4
1,641,581	+				+0.8
1,641,581	+				-2.2
1,641,582	-				+1.0
1,641,582	-				-1.1
1,641,582	-				-0.4
1,641,582	-				+0.3
1,641,582	-				-0.1
1,641,583	+				+0.6
1,641,583	+				-1.6
1,641,583	+				-1.2
1,641,583	+				-0.7
1,641,583	+				+0.2
1,641,583	+				+0.6
1,641,583	+				+0.6
1,641,583	+				+0.6
1,641,583	+				-0.4
1,641,583	+				-0.2
1,641,583	+				-0.4
1,641,583	+				-1.0
1,641,583	+				-0.9
1,641,583	+				+0.6
1,641,583	+				+0.0
1,641,583	+				-0.5
1,641,584	-				-1.8
1,641,584	-				-1.0
1,641,584	-				-0.6
1,641,584	-				-1.6
1,641,584	-				-0.0
1,641,584	-				-2.2
1,641,584	-				-0.8
1,641,584	-				+0.2
1,641,584	-				-0.1
1,641,584	-				+1.2
1,641,584	-				+1.3
1,641,599	+				+0.1
1,641,599	+				-1.4
1,641,600	-				+0.1
1,641,602	-				-0.2
1,641,602	-				+0.6
1,641,602	-				+1.4
1,641,602	-				+0.0
1,641,602	-				+1.0
1,641,698	-				+0.1
1,641,704	-				+2.9
1,641,704	-				-0.6
1,641,704	-				+1.0
1,641,710	+				+0.3
1,641,710	+				-0.0
1,641,711	-				-0.8
1,641,711	-				-0.7
1,641,711	-				+0.9
1,641,711	-				+0.6
1,641,716	+				-1.4
1,641,723	-				-1.2
1,641,800	+				+0.2
1,641,800	+				-1.0
1,641,800	+				+2.4
1,641,800	+				+0.6
1,641,800	+				-1.4
1,641,801	-				+0.1
1,641,801	-				-0.2
1,641,801	-				+0.4
1,641,801	-				-0.2
1,641,801	-				-0.6
1,641,801	-				-1.9
1,641,801	-				-1.8
1,641,801	-				-0.5
1,641,801	-				-0.2
1,641,801	-				-0.8
1,641,801	-				-0.0
1,641,801	-				+0.8
1,641,801	-				-0.0
1,641,801	-				+0.2
1,641,801	-				-0.9
1,641,802	+				+1.0
1,641,803	-				-1.0
1,641,803	-				-0.2
1,641,803	-				+0.1
1,641,824	-				+0.0
1,641,850	-		DZA65_RS07870	0.10	-0.1
1,641,850	-		DZA65_RS07870	0.10	+0.8
1,641,850	-		DZA65_RS07870	0.10	+0.3
1,641,967	+		DZA65_RS07870	0.23	-0.4
1,641,968	-		DZA65_RS07870	0.23	-1.0
1,641,968	-		DZA65_RS07870	0.23	+0.6
1,641,988	+		DZA65_RS07870	0.25	+1.5
1,642,055	-		DZA65_RS07870	0.32	+2.5
1,642,068	-		DZA65_RS07870	0.33	-0.0
1,642,068	-		DZA65_RS07870	0.33	+0.1
1,642,238	+		DZA65_RS07870	0.51	-0.2
1,642,238	+		DZA65_RS07870	0.51	+1.8
1,642,239	-		DZA65_RS07870	0.51	+1.3
1,642,242	-		DZA65_RS07870	0.51	-1.0
1,642,242	-		DZA65_RS07870	0.51	-0.5
1,642,242	-		DZA65_RS07870	0.51	+1.1
1,642,336	+		DZA65_RS07870	0.61	-0.6
1,642,336	+		DZA65_RS07870	0.61	+1.0
1,642,336	+		DZA65_RS07870	0.61	-0.7
1,642,336	+		DZA65_RS07870	0.61	+0.1
1,642,337	-		DZA65_RS07870	0.61	+0.1
1,642,337	-		DZA65_RS07870	0.61	+0.3
1,642,337	-		DZA65_RS07870	0.61	+0.2
1,642,337	-		DZA65_RS07870	0.61	-1.2
1,642,337	-		DZA65_RS07870	0.61	-1.4
1,642,408	+		DZA65_RS07870	0.69	-0.5
1,642,448	+		DZA65_RS07870	0.73	-0.4
1,642,448	+		DZA65_RS07870	0.73	+0.4
1,642,598	+		DZA65_RS07870	0.89	-2.4
1,642,598	+		DZA65_RS07870	0.89	+0.8
1,642,598	+		DZA65_RS07870	0.89	+0.1
1,642,599	-		DZA65_RS07870	0.89	+1.3
1,642,599	-		DZA65_RS07870	0.89	+3.2
1,642,695	-				+0.7
1,642,728	+				-0.4
1,642,729	-				-2.0
1,642,729	-				-0.4
1,642,877	+				+0.2
1,642,878	-				-1.4
1,642,978	+				+1.9
1,643,012	+				+0.7
1,643,012	+				+1.0
1,643,012	+				+2.4
1,643,012	+				+0.3
1,643,012	+				+0.9
1,643,012	+				-1.2
1,643,012	+				+1.3
1,643,013	-				-1.0
1,643,013	-				+0.2
1,643,013	-				+0.6
1,643,013	-				+0.3
1,643,013	-				-0.4
1,643,013	-				+0.3
1,643,013	-				-1.2
1,643,065	+				+0.1
1,643,066	-				+0.6
1,643,113	+				-0.2
1,643,113	+				-0.9
1,643,113	+				-0.2
1,643,114	-				-0.3
1,643,114	-				+1.0
1,643,128	-				+0.2
1,643,157	+				-0.9
1,643,196	-				+0.2
1,643,253	+				-0.6
1,643,254	-				+0.4
1,643,304	+		DZA65_RS07875	0.11	-0.2
1,643,316	+		DZA65_RS07875	0.12	-0.2
1,643,341	-		DZA65_RS07875	0.14	-1.8
1,643,341	-		DZA65_RS07875	0.14	-1.0
1,643,420	-		DZA65_RS07875	0.20	-0.1
1,643,430	+		DZA65_RS07875	0.20	+1.3
1,643,430	+		DZA65_RS07875	0.20	+1.6
1,643,430	+		DZA65_RS07875	0.20	+0.6
1,643,431	-		DZA65_RS07875	0.21	+1.1
1,643,431	-		DZA65_RS07875	0.21	-1.0
1,643,433	+		DZA65_RS07875	0.21	-2.2
1,643,460	+		DZA65_RS07875	0.23	+0.4
1,643,461	-		DZA65_RS07875	0.23	-1.9
1,643,499	+		DZA65_RS07875	0.26	+2.9
1,643,499	+		DZA65_RS07875	0.26	+0.6
1,643,499	+		DZA65_RS07875	0.26	-0.6
1,643,499	+		DZA65_RS07875	0.26	+0.2
1,643,499	+		DZA65_RS07875	0.26	+0.7
1,643,499	+		DZA65_RS07875	0.26	+1.0
1,643,500	-		DZA65_RS07875	0.26	+0.6
1,643,500	-		DZA65_RS07875	0.26	-0.2
1,643,500	-		DZA65_RS07875	0.26	+1.0
1,643,500	-		DZA65_RS07875	0.26	-0.4
1,643,524	-		DZA65_RS07875	0.28	-0.2
1,643,524	-		DZA65_RS07875	0.28	-0.2
1,643,534	-		DZA65_RS07875	0.28	+1.7
1,643,610	+		DZA65_RS07875	0.34	+1.4
1,643,610	+		DZA65_RS07875	0.34	-0.3
1,643,611	-		DZA65_RS07875	0.34	+2.3
1,643,611	-		DZA65_RS07875	0.34	-0.2
1,643,611	-		DZA65_RS07875	0.34	+0.1
1,643,612	+		DZA65_RS07875	0.34	-0.1
1,643,612	+		DZA65_RS07875	0.34	+0.3
1,643,612	+		DZA65_RS07875	0.34	+0.4
1,643,613	-		DZA65_RS07875	0.34	+1.6
1,643,613	-		DZA65_RS07875	0.34	-0.2
1,643,613	-		DZA65_RS07875	0.34	-1.2