Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07205

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,497,761	+		DZA65_RS07200	0.65	-3.0
1,497,761	+		DZA65_RS07200	0.65	+1.0
1,497,761	+		DZA65_RS07200	0.65	+0.3
1,497,761	+		DZA65_RS07200	0.65	-0.5
1,497,761	+		DZA65_RS07200	0.65	+0.0
1,497,761	+		DZA65_RS07200	0.65	-2.0
1,497,761	+		DZA65_RS07200	0.65	-0.8
1,497,761	+		DZA65_RS07200	0.65	-0.1
1,497,761	+		DZA65_RS07200	0.65	-0.7
1,497,761	+		DZA65_RS07200	0.65	+0.5
1,497,761	+		DZA65_RS07200	0.65	-1.4
1,497,761	+		DZA65_RS07200	0.65	-1.4
1,497,761	+		DZA65_RS07200	0.65	+0.3
1,497,761	+		DZA65_RS07200	0.65	-0.8
1,497,761	+		DZA65_RS07200	0.65	-0.4
1,497,761	+		DZA65_RS07200	0.65	+0.1
1,497,762	-		DZA65_RS07200	0.65	-0.1
1,497,762	-		DZA65_RS07200	0.65	+1.0
1,497,762	-		DZA65_RS07200	0.65	-2.5
1,497,767	+		DZA65_RS07200	0.65	-1.3
1,497,767	+		DZA65_RS07200	0.65	+1.3
1,497,767	+		DZA65_RS07200	0.65	+1.1
1,497,767	+		DZA65_RS07200	0.65	+0.9
1,497,767	+		DZA65_RS07200	0.65	+0.3
1,497,767	+		DZA65_RS07200	0.65	-1.4
1,497,768	-		DZA65_RS07200	0.65	+1.2
1,497,768	-		DZA65_RS07200	0.65	+0.3
1,497,768	-		DZA65_RS07200	0.65	+0.6
1,497,768	-		DZA65_RS07200	0.65	+1.0
1,497,768	-		DZA65_RS07200	0.65	-1.2
1,497,768	-		DZA65_RS07200	0.65	+1.5
1,497,768	-		DZA65_RS07200	0.65	+0.0
1,497,802	+		DZA65_RS07200	0.67	+1.4
1,497,802	+		DZA65_RS07200	0.67	+1.8
1,497,802	+		DZA65_RS07200	0.67	-3.5
1,497,802	+		DZA65_RS07200	0.67	+0.8
1,497,803	-		DZA65_RS07200	0.67	-0.1
1,497,805	+		DZA65_RS07200	0.67	-0.1
1,497,805	+		DZA65_RS07200	0.67	+0.1
1,497,806	-		DZA65_RS07200	0.67	-1.4
1,497,806	-		DZA65_RS07200	0.67	+0.1
1,497,806	-		DZA65_RS07200	0.67	-0.5
1,497,806	-		DZA65_RS07200	0.67	-0.5
1,497,853	+		DZA65_RS07200	0.69	-0.0
1,497,853	+		DZA65_RS07200	0.69	-0.3
1,497,853	+		DZA65_RS07200	0.69	+0.6
1,497,854	-		DZA65_RS07200	0.69	+1.0
1,497,854	-		DZA65_RS07200	0.69	+2.9
1,497,854	-		DZA65_RS07200	0.69	-0.1
1,497,857	+		DZA65_RS07200	0.69	-0.0
1,497,857	+		DZA65_RS07200	0.69	+0.3
1,497,857	+		DZA65_RS07200	0.69	-1.1
1,497,857	+		DZA65_RS07200	0.69	+1.3
1,497,857	+		DZA65_RS07200	0.69	-1.1
1,497,857	+		DZA65_RS07200	0.69	+2.0
1,497,857	+		DZA65_RS07200	0.69	-0.8
1,497,858	-		DZA65_RS07200	0.69	+1.2
1,497,858	-		DZA65_RS07200	0.69	-2.2
1,497,858	-		DZA65_RS07200	0.69	-0.2
1,497,858	-		DZA65_RS07200	0.69	-0.5
1,497,917	-		DZA65_RS07200	0.72	+0.8
1,497,932	+		DZA65_RS07200	0.73	+3.3
1,497,932	+		DZA65_RS07200	0.73	-1.4
1,497,932	+		DZA65_RS07200	0.73	+0.7
1,497,932	+		DZA65_RS07200	0.73	-1.1
1,497,932	+		DZA65_RS07200	0.73	+0.6
1,497,932	+		DZA65_RS07200	0.73	-2.0
1,497,932	+		DZA65_RS07200	0.73	-2.5
1,497,932	+		DZA65_RS07200	0.73	-0.7
1,497,933	-		DZA65_RS07200	0.73	-0.8
1,497,933	-		DZA65_RS07200	0.73	+1.5
1,497,933	-		DZA65_RS07200	0.73	-0.4
1,497,933	-		DZA65_RS07200	0.73	-0.9
1,497,933	-		DZA65_RS07200	0.73	-0.4
1,497,933	-		DZA65_RS07200	0.73	+1.4
1,497,981	-		DZA65_RS07200	0.75	-0.3
1,498,004	+		DZA65_RS07200	0.76	+0.0
1,498,004	+		DZA65_RS07200	0.76	+0.2
1,498,004	+		DZA65_RS07200	0.76	-1.0
1,498,004	+		DZA65_RS07200	0.76	+0.3
1,498,005	-		DZA65_RS07200	0.76	-0.7
1,498,005	-		DZA65_RS07200	0.76	+0.6
1,498,005	-		DZA65_RS07200	0.76	-1.7
1,498,005	-		DZA65_RS07200	0.76	-1.1
1,498,005	-		DZA65_RS07200	0.76	+1.0
1,498,005	-		DZA65_RS07200	0.76	-0.5
1,498,005	-		DZA65_RS07200	0.76	+0.4
1,498,005	-		DZA65_RS07200	0.76	-1.0
1,498,006	+		DZA65_RS07200	0.76	+1.1
1,498,006	+		DZA65_RS07200	0.76	-1.0
1,498,025	+		DZA65_RS07200	0.77	-0.4
1,498,040	+		DZA65_RS07200	0.78	+0.9
1,498,040	+		DZA65_RS07200	0.78	-0.6
1,498,040	+				-1.0
1,498,041	-		DZA65_RS07200	0.78	+0.2
1,498,041	-		DZA65_RS07200	0.78	-0.9
1,498,112	+		DZA65_RS07200	0.81	-0.4
1,498,112	+		DZA65_RS07200	0.81	-1.3
1,498,112	+		DZA65_RS07200	0.81	-1.7
1,498,112	+		DZA65_RS07200	0.81	-0.3
1,498,113	-		DZA65_RS07200	0.81	+0.4
1,498,113	-		DZA65_RS07200	0.81	+0.2
1,498,113	-		DZA65_RS07200	0.81	-1.4
1,498,113	-		DZA65_RS07200	0.81	+0.6
1,498,113	-		DZA65_RS07200	0.81	+0.6
1,498,113	-		DZA65_RS07200	0.81	+1.0
1,498,113	-		DZA65_RS07200	0.81	+0.3
1,498,113	-		DZA65_RS07200	0.81	-2.0
1,498,157	+		DZA65_RS07200	0.83	-0.4
1,498,157	+		DZA65_RS07200	0.83	+1.9
1,498,157	+		DZA65_RS07200	0.83	-0.8
1,498,158	-		DZA65_RS07200	0.83	+0.8
1,498,158	-		DZA65_RS07200	0.83	-0.4
1,498,158	-		DZA65_RS07200	0.83	+0.2
1,498,158	-		DZA65_RS07200	0.83	+1.0
1,498,164	+		DZA65_RS07200	0.83	-1.4
1,498,164	+		DZA65_RS07200	0.83	+0.9
1,498,165	-		DZA65_RS07200	0.83	-0.5
1,498,165	-		DZA65_RS07200	0.83	-0.1
1,498,187	+		DZA65_RS07200	0.84	+1.0
1,498,187	+		DZA65_RS07200	0.84	-0.4
1,498,188	-		DZA65_RS07200	0.85	-1.2
1,498,188	-		DZA65_RS07200	0.85	-0.4
1,498,242	-		DZA65_RS07200	0.87	+1.2
1,498,347	-				-0.8
1,498,376	+				+1.0
1,498,376	+				-0.4
1,498,376	+				-0.1
1,498,376	+				-0.8
1,498,377	-				-1.4
1,498,377	-				+0.6
1,498,377	-				+0.8
1,498,377	-				-1.7
1,498,377	-				-2.0
1,498,377	-				-1.1
1,498,493	+				-0.2
1,498,493	+				-0.2
1,498,493	+				-1.5
1,498,493	+				+0.6
1,498,493	+				+0.0
1,498,494	-				+1.2
1,498,494	-				+0.9
1,498,494	-				+0.0
1,498,494	-				-0.7
1,498,494	-				+0.1
1,498,494	-				-0.4
1,498,494	-				+0.6
1,498,494	-				+0.6
1,498,495	+				+0.9
1,498,495	+				+0.3
1,498,495	+				-2.2
1,498,496	-				-1.5
1,498,496	-				-2.2
1,498,496	-				+0.1
1,498,496	-				-1.0
1,498,496	-				-0.4
1,498,508	-				+1.6
1,498,531	+				-0.7
1,498,531	+				-1.4
1,498,531	+				-1.7
1,498,531	+				+0.5
1,498,531	+				+1.8
1,498,532	-				-0.2
1,498,532	-				+1.6
1,498,566	+				-1.4
1,498,567	-				+0.2
1,498,570	+				+0.0
1,498,570	+				+0.2
1,498,571	-				-0.3
1,498,582	-				-2.2
1,498,589	+				-0.4
1,498,589	+				+0.4
1,498,589	+				-0.1
1,498,590	-				+0.1
1,498,590	-				-0.8
1,498,590	-				+0.0
1,498,590	-				+0.8
1,498,590	-				-0.2
1,498,590	-				-0.4
1,498,655	-				-0.6
1,498,679	-				-0.6
1,498,688	-				-0.0
1,498,688	-				+0.6
1,498,688	-				+0.5
1,498,701	+				+0.1
1,498,701	+				-0.4
1,498,701	+				-0.5
1,498,701	+				+1.0
1,498,701	+				+0.1
1,498,701	+				+1.2
1,498,702	-				-0.2
1,498,702	-				+0.5
1,498,702	-				+4.3
1,498,702	-				+0.6
1,498,702	-				-0.6
1,498,702	-				-0.2
1,498,702	-				+0.7
1,498,745	+				-1.3
1,498,746	-				+1.2
1,498,746	-				+1.1
1,499,101	+		DZA65_RS07205	0.46	-0.3
1,499,113	+		DZA65_RS07205	0.48	+1.9
1,499,113	+		DZA65_RS07205	0.48	+1.7
1,499,113	+		DZA65_RS07205	0.48	+0.9
1,499,114	-		DZA65_RS07205	0.48	+0.0
1,499,114	-		DZA65_RS07205	0.48	+1.0
1,499,114	-		DZA65_RS07205	0.48	+0.2
1,499,114	-		DZA65_RS07205	0.48	+0.2
1,499,202	+		DZA65_RS07205	0.58	-0.6
1,499,202	+		DZA65_RS07205	0.58	-1.0
1,499,202	+		DZA65_RS07205	0.58	+0.3
1,499,202	+		DZA65_RS07205	0.58	+0.4
1,499,202	+		DZA65_RS07205	0.58	+0.6
1,499,202	+		DZA65_RS07205	0.58	-1.7
1,499,203	-		DZA65_RS07205	0.58	-0.4
1,499,203	-		DZA65_RS07205	0.58	+0.6
1,499,203	-		DZA65_RS07205	0.58	-0.2
1,499,203	-		DZA65_RS07205	0.58	-0.4
1,499,401	+		DZA65_RS07205	0.80	-1.4
1,499,401	+		DZA65_RS07205	0.80	+0.2
1,499,401	+		DZA65_RS07205	0.80	-0.9
1,499,401	+		DZA65_RS07205	0.80	+1.1
1,499,402	-		DZA65_RS07205	0.80	+0.9
1,499,402	-		DZA65_RS07205	0.80	-2.4
1,499,402	-		DZA65_RS07205	0.80	+1.0
1,499,402	-		DZA65_RS07205	0.80	-0.0
1,499,428	+		DZA65_RS07205	0.83	+1.0
1,499,429	-		DZA65_RS07205	0.83	-0.4
1,499,445	+		DZA65_RS07205	0.85	-0.7
1,499,530	+				+0.2
1,499,530	+				+0.6
1,499,531	-				-0.5
1,499,531	-				+0.9
1,499,531	-				+1.6
1,499,531	-				-0.2
1,499,602	+				-0.5
1,499,602	+				+0.5
1,499,603	-				+0.9
1,499,606	+				+0.1
1,499,607	-				-1.0
1,499,607	-				+1.7
1,499,617	+				+0.0
1,499,618	-				-0.7
1,499,618	-				+0.4
1,499,618	-				+0.7
1,499,618	-				-0.1
1,499,618	-				+3.9
1,499,619	+				-0.3
1,499,619	+				+1.8
1,499,619	+				+1.6
1,499,619	+				+0.1
1,499,619	+				-1.1
1,499,619	+				-0.1
1,499,619	+				+0.6
1,499,619	+				+0.6
1,499,619	+				-0.4
1,499,619	+				+0.6
1,499,619	+				+0.4
1,499,619	+				+2.9
1,499,620	-				+0.6
1,499,620	-				-1.1
1,499,620	-				+0.7
1,499,620	-				+0.6
1,499,620	-				+1.3
1,499,620	-				+0.8
1,499,620	-				+2.9
1,499,620	-				-2.0
1,499,620	-				-0.2
1,499,620	-				-0.6
1,499,620	-				-1.5
1,499,620	-				-0.5
1,499,620	-				+0.5
1,499,620	-				-2.0
1,499,620	-				+1.6
1,499,620	-				-0.3
1,499,620	-				-0.4
1,499,620	-				-2.4
1,499,620	-				-0.7
1,499,620	-				-0.2
1,499,623	+				-1.8
1,499,624	-				-1.1
1,499,624	-				-2.2
1,499,624	-				-1.2
1,499,624	-				+0.2
1,499,719	-				-2.1
1,499,768	-				+0.5
1,499,895	+		DZA65_RS07210	0.26	-0.1
1,499,895	+		DZA65_RS07210	0.26	-0.4
1,499,895	+		DZA65_RS07210	0.26	-0.1
1,499,895	+		DZA65_RS07210	0.26	-1.0
1,499,895	+		DZA65_RS07210	0.26	+0.6
1,499,896	-		DZA65_RS07210	0.26	+1.0
1,499,896	-		DZA65_RS07210	0.26	-1.1
1,499,896	-		DZA65_RS07210	0.26	+1.1
1,499,896	-		DZA65_RS07210	0.26	+0.1
1,499,896	-		DZA65_RS07210	0.26	+1.6
1,499,896	-		DZA65_RS07210	0.26	-0.6
1,500,031	+		DZA65_RS07210	0.53	-0.0
1,500,031	+		DZA65_RS07210	0.53	+0.5
1,500,117	-		DZA65_RS07210	0.69	+0.2
1,500,117	-		DZA65_RS07210	0.69	+0.0
1,500,117	-		DZA65_RS07210	0.69	-0.6
1,500,370	-				+1.2
1,500,398	+				+0.9
1,500,398	+				+0.3
1,500,398	+				+0.1
1,500,398	+				-0.4
1,500,398	+				-0.1
1,500,399	-				-1.8
1,500,399	-				+0.2
1,500,399	-				+0.4
1,500,399	-				-0.5
1,500,399	-				+0.0
1,500,435	+				+0.3
1,500,436	-				-1.5
1,500,436	-				-1.6
1,500,436	-				+0.0
1,500,532	+				-0.3
1,500,532	+				+0.6
1,500,532	+				+0.8
1,500,532	+				-0.7
1,500,532	+				-0.7
1,500,532	+				+1.9
1,500,532	+				+0.3
1,500,532	+				+0.6
1,500,532	+				-0.8
1,500,533	-				+0.9
1,500,533	-				-0.6
1,500,533	-				+0.0
1,500,533	-				+0.6
1,500,533	-				+0.6
1,500,533	-				+1.0
1,500,533	-				-0.3
1,500,568	+		DZA65_RS07215	0.12	-0.2
1,500,568	+		DZA65_RS07215	0.12	-0.5
1,500,570	+		DZA65_RS07215	0.12	-0.4
1,500,570	+		DZA65_RS07215	0.12	+0.6
1,500,570	+		DZA65_RS07215	0.12	-0.7
1,500,570	+		DZA65_RS07215	0.12	-0.7
1,500,571	-		DZA65_RS07215	0.12	-1.2
1,500,571	-		DZA65_RS07215	0.12	-0.4
1,500,571	-		DZA65_RS07215	0.12	-0.3
1,500,571	-		DZA65_RS07215	0.12	-0.6
1,500,571	-		DZA65_RS07215	0.12	+3.4
1,500,571	-				+1.9
1,500,571	-		DZA65_RS07215	0.12	+1.7
1,500,580	-		DZA65_RS07215	0.13	-0.4
1,500,580	-		DZA65_RS07215	0.13	+1.4