Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07180

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,491,720	+		DZA65_RS07175	0.17	+0.3
1,491,721	-		DZA65_RS07175	0.17	-0.6
1,491,733	+				+2.2
1,491,733	+		DZA65_RS07175	0.18	+0.0
1,491,733	+		DZA65_RS07175	0.18	-0.2
1,491,733	+		DZA65_RS07175	0.18	-0.6
1,491,775	-		DZA65_RS07175	0.23	+1.2
1,491,880	+		DZA65_RS07175	0.35	+0.3
1,491,880	+		DZA65_RS07175	0.35	-0.5
1,491,884	+		DZA65_RS07175	0.35	-1.5
1,491,884	+		DZA65_RS07175	0.35	-0.5
1,491,885	-		DZA65_RS07175	0.35	-0.2
1,491,885	-		DZA65_RS07175	0.35	-2.2
1,491,885	-		DZA65_RS07175	0.35	-1.4
1,492,041	+		DZA65_RS07175	0.53	-0.6
1,492,072	+		DZA65_RS07175	0.57	-1.6
1,492,072	+		DZA65_RS07175	0.57	-2.2
1,492,072	+		DZA65_RS07175	0.57	-0.2
1,492,073	-		DZA65_RS07175	0.57	+0.1
1,492,094	-		DZA65_RS07175	0.59	+0.9
1,492,134	+		DZA65_RS07175	0.64	+0.1
1,492,135	-		DZA65_RS07175	0.64	+0.1
1,492,164	+		DZA65_RS07175	0.67	+0.9
1,492,164	+		DZA65_RS07175	0.67	+0.6
1,492,164	+		DZA65_RS07175	0.67	-1.7
1,492,164	+		DZA65_RS07175	0.67	+3.5
1,492,164	+		DZA65_RS07175	0.67	-0.7
1,492,164	+		DZA65_RS07175	0.67	-1.1
1,492,165	-		DZA65_RS07175	0.67	-1.4
1,492,165	-		DZA65_RS07175	0.67	-0.8
1,492,165	-		DZA65_RS07175	0.67	-0.1
1,492,165	-		DZA65_RS07175	0.67	-1.4
1,492,165	-		DZA65_RS07175	0.67	-2.0
1,492,165	-		DZA65_RS07175	0.67	+1.5
1,492,215	+		DZA65_RS07175	0.73	+0.2
1,492,216	-		DZA65_RS07175	0.73	-1.8
1,492,268	+		DZA65_RS07175	0.79	-1.6
1,492,268	+				-0.1
1,492,268	+		DZA65_RS07175	0.79	-1.1
1,492,288	+		DZA65_RS07175	0.81	-0.5
1,492,338	-		DZA65_RS07175	0.87	+0.8
1,492,338	-		DZA65_RS07175	0.87	-1.0
1,492,338	-		DZA65_RS07175	0.87	+0.4
1,492,467	+				-0.4
1,492,467	+				-0.7
1,492,467	+				-1.0
1,492,467	+				-1.0
1,492,467	+				+0.3
1,492,467	+				-1.9
1,492,468	-				+0.0
1,492,468	-				-0.5
1,492,468	-				+0.2
1,492,468	-				+0.0
1,492,468	-				+0.6
1,492,468	-				-0.6
1,492,468	-				-0.2
1,492,469	+				-0.9
1,492,470	-				-1.4
1,492,485	+				-1.7
1,492,615	+				-0.4
1,492,616	-				+2.0
1,492,669	-				-1.7
1,492,718	-				-1.0
1,492,719	+				-1.0
1,492,801	+		DZA65_RS07180	0.12	-1.5
1,492,801	+		DZA65_RS07180	0.12	+0.1
1,492,801	+		DZA65_RS07180	0.12	+0.0
1,492,802	-		DZA65_RS07180	0.12	-2.5
1,492,845	+		DZA65_RS07180	0.15	-0.7
1,492,888	-		DZA65_RS07180	0.18	-0.8
1,492,951	+		DZA65_RS07180	0.22	-2.5
1,492,951	+		DZA65_RS07180	0.22	+0.5
1,492,951	+		DZA65_RS07180	0.22	+0.4
1,492,952	-		DZA65_RS07180	0.22	-1.7
1,492,952	-		DZA65_RS07180	0.22	-0.7
1,492,952	-		DZA65_RS07180	0.22	-1.0
1,492,952	-		DZA65_RS07180	0.22	-1.0
1,492,952	-		DZA65_RS07180	0.22	-1.4
1,492,954	-		DZA65_RS07180	0.22	+0.4
1,493,058	+		DZA65_RS07180	0.30	-2.7
1,493,083	+		DZA65_RS07180	0.32	+0.9
1,493,084	-		DZA65_RS07180	0.32	-0.8
1,493,149	+		DZA65_RS07180	0.36	-1.0
1,493,149	+		DZA65_RS07180	0.36	+0.0
1,493,149	+		DZA65_RS07180	0.36	+0.6
1,493,150	-		DZA65_RS07180	0.36	+1.6
1,493,150	-				-1.4
1,493,150	-		DZA65_RS07180	0.36	-2.2
1,493,150	-		DZA65_RS07180	0.36	-0.8
1,493,150	-		DZA65_RS07180	0.36	-3.0
1,493,150	-		DZA65_RS07180	0.36	-0.6
1,493,150	-		DZA65_RS07180	0.36	-1.7
1,493,176	+				+1.6
1,493,180	+		DZA65_RS07180	0.38	-0.1
1,493,181	-		DZA65_RS07180	0.39	-0.2
1,493,236	+		DZA65_RS07180	0.42	-0.6
1,493,236	+		DZA65_RS07180	0.42	-2.0
1,493,373	+		DZA65_RS07180	0.52	-0.8
1,493,373	+		DZA65_RS07180	0.52	-0.4
1,493,377	+		DZA65_RS07180	0.52	+0.4
1,493,377	+		DZA65_RS07180	0.52	-1.7
1,493,378	-		DZA65_RS07180	0.53	-0.7
1,493,497	+		DZA65_RS07180	0.61	-1.0
1,493,535	+		DZA65_RS07180	0.64	+0.3
1,493,535	+		DZA65_RS07180	0.64	+0.6
1,493,536	-		DZA65_RS07180	0.64	+0.0
1,493,614	+		DZA65_RS07180	0.69	-1.4
1,493,615	-		DZA65_RS07180	0.69	-0.4
1,493,615	-		DZA65_RS07180	0.69	-0.3
1,493,635	+		DZA65_RS07180	0.71	-3.1
1,493,635	+		DZA65_RS07180	0.71	+0.5
1,493,635	+		DZA65_RS07180	0.71	-0.4
1,493,636	-		DZA65_RS07180	0.71	+0.2
1,493,636	-		DZA65_RS07180	0.71	+0.0
1,493,636	-		DZA65_RS07180	0.71	-0.7
1,493,636	-		DZA65_RS07180	0.71	-2.4
1,493,770	+		DZA65_RS07180	0.80	-0.8
1,493,813	-		DZA65_RS07180	0.83	-1.4
1,493,813	-		DZA65_RS07180	0.83	+0.2
1,493,917	+				+0.8
1,493,920	+				+0.6
1,493,945	+				+0.6
1,493,991	+				+0.3
1,493,991	+				-1.0
1,493,992	-				-2.2
1,493,995	+				+0.8
1,494,047	-				+0.5
1,494,047	-				-0.5
1,494,082	-				+0.2
1,494,082	-				-1.4
1,494,082	-				+0.3
1,494,100	+				-0.1
1,494,100	+				+1.2
1,494,100	+				-1.1
1,494,101	-				-0.4
1,494,101	-				+2.1
1,494,101	-				-0.4
1,494,106	-				+0.0
1,494,106	-				+0.3
1,494,156	+				+0.6
1,494,156	+				-0.7
1,494,164	+				-1.4
1,494,212	+				+0.1
1,494,213	-				-0.2
1,494,221	+				+1.6
1,494,223	+				+0.2
1,494,224	-				-2.2
1,494,224	-				+0.7
1,494,263	+				-1.7
1,494,264	-				+1.4
1,494,316	+				-0.4
1,494,340	-				-0.8
1,494,377	+				+1.4
1,494,553	+				+0.5
1,494,555	+				+1.6
1,494,555	+				-0.2
1,494,555	+				-0.3
1,494,556	-				+0.1
1,494,567	+				-0.1
1,494,568	-				-0.1
1,494,598	-		DZA65_RS07185	0.11	+0.6
1,494,653	-		DZA65_RS07185	0.31	-1.0
1,494,688	-		DZA65_RS07185	0.44	-0.6
1,494,707	-		DZA65_RS07185	0.51	+0.6
1,494,721	+		DZA65_RS07185	0.56	+0.6
1,494,721	+		DZA65_RS07185	0.56	+2.0
1,494,721	+		DZA65_RS07185	0.56	+0.4
1,494,722	-		DZA65_RS07185	0.57	-0.8
1,494,728	+		DZA65_RS07185	0.59	-1.3
1,494,808	+		DZA65_RS07185	0.89	-0.3
1,494,808	+		DZA65_RS07185	0.89	+0.6
1,494,847	+				-1.0
1,494,851	-				-0.2
1,494,931	+				-0.4
1,494,932	-				+0.2
1,494,932	-				+0.0
1,494,970	+				+0.6
1,495,030	+		DZA65_RS07190	0.17	-1.1
1,495,031	-		DZA65_RS07190	0.18	+0.1