Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06350 and DZA65_RS06355 are separated by 63 nucleotides DZA65_RS06355 and DZA65_RS06360 overlap by 33 nucleotides DZA65_RS06360 and DZA65_RS06365 overlap by 4 nucleotides
DZA65_RS06350: DZA65_RS06350 - SDR family oxidoreductase, at 1,321,766 to 1,322,542
_RS06350
DZA65_RS06355: DZA65_RS06355 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 1,322,606 to 1,323,247
_RS06355
DZA65_RS06360: DZA65_RS06360 - ABC transporter ATP-binding protein, at 1,323,215 to 1,323,901
_RS06360
DZA65_RS06365: DZA65_RS06365 - ABC transporter permease, at 1,323,898 to 1,326,330
_RS06365
Position (kb) 1323
1324 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1322.283 kb on + strand, within DZA65_RS06350 at 1322.316 kb on + strand, within DZA65_RS06350 at 1322.317 kb on - strand, within DZA65_RS06350 at 1322.338 kb on + strand, within DZA65_RS06350 at 1322.338 kb on + strand, within DZA65_RS06350 at 1322.542 kb on + strand at 1322.543 kb on - strand at 1322.548 kb on + strand at 1322.548 kb on + strand at 1322.548 kb on + strand at 1322.565 kb on + strand at 1322.565 kb on + strand at 1322.565 kb on + strand at 1322.570 kb on - strand at 1322.608 kb on - strand at 1322.617 kb on + strand at 1322.617 kb on + strand at 1322.618 kb on - strand at 1322.719 kb on - strand, within DZA65_RS06355 at 1322.752 kb on + strand, within DZA65_RS06355 at 1322.752 kb on + strand, within DZA65_RS06355 at 1322.752 kb on + strand, within DZA65_RS06355 at 1322.753 kb on - strand, within DZA65_RS06355 at 1322.800 kb on + strand, within DZA65_RS06355 at 1322.803 kb on - strand, within DZA65_RS06355 at 1322.803 kb on - strand, within DZA65_RS06355 at 1322.803 kb on - strand, within DZA65_RS06355 at 1322.814 kb on + strand, within DZA65_RS06355 at 1322.814 kb on + strand, within DZA65_RS06355 at 1322.814 kb on + strand, within DZA65_RS06355 at 1322.843 kb on + strand, within DZA65_RS06355 at 1322.875 kb on + strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1322.876 kb on - strand, within DZA65_RS06355 at 1323.118 kb on + strand, within DZA65_RS06355 at 1323.119 kb on - strand, within DZA65_RS06355 at 1323.134 kb on + strand, within DZA65_RS06355 at 1323.135 kb on - strand, within DZA65_RS06355 at 1323.135 kb on - strand, within DZA65_RS06355 at 1323.160 kb on + strand, within DZA65_RS06355 at 1323.160 kb on + strand, within DZA65_RS06355 at 1323.160 kb on + strand, within DZA65_RS06355 at 1323.160 kb on + strand, within DZA65_RS06355 at 1323.161 kb on - strand, within DZA65_RS06355 at 1323.200 kb on + strand at 1323.201 kb on - strand at 1323.201 kb on - strand at 1323.214 kb on + strand at 1323.215 kb on - strand at 1323.215 kb on - strand at 1323.250 kb on + strand at 1323.250 kb on + strand at 1323.250 kb on + strand at 1323.251 kb on - strand at 1323.254 kb on - strand at 1323.254 kb on - strand at 1323.254 kb on - strand at 1323.505 kb on + strand, within DZA65_RS06360 at 1323.505 kb on + strand, within DZA65_RS06360 at 1323.506 kb on - strand, within DZA65_RS06360 at 1323.506 kb on - strand, within DZA65_RS06360 at 1323.697 kb on + strand, within DZA65_RS06360 at 1323.697 kb on + strand, within DZA65_RS06360 at 1323.697 kb on + strand, within DZA65_RS06360 at 1323.808 kb on + strand, within DZA65_RS06360 at 1323.950 kb on + strand at 1323.950 kb on + strand at 1323.950 kb on + strand at 1323.951 kb on - strand at 1323.951 kb on - strand at 1323.951 kb on - strand at 1323.951 kb on - strand at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.162 kb on + strand, within DZA65_RS06365 at 1324.222 kb on + strand, within DZA65_RS06365 at 1324.222 kb on + strand, within DZA65_RS06365 at 1324.222 kb on + strand, within DZA65_RS06365 at 1324.223 kb on - strand, within DZA65_RS06365 at 1324.223 kb on - strand, within DZA65_RS06365 at 1324.223 kb on - strand, within DZA65_RS06365 at 1324.350 kb on - strand, within DZA65_RS06365 at 1324.473 kb on + strand, within DZA65_RS06365 at 1324.474 kb on - strand, within DZA65_RS06365 at 1324.476 kb on + strand, within DZA65_RS06365 at 1324.476 kb on + strand, within DZA65_RS06365 at 1324.477 kb on - strand, within DZA65_RS06365 at 1324.477 kb on - strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.486 kb on + strand, within DZA65_RS06365 at 1324.488 kb on + strand, within DZA65_RS06365 at 1324.488 kb on + strand, within DZA65_RS06365 at 1324.488 kb on + strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.489 kb on - strand, within DZA65_RS06365 at 1324.528 kb on + strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.529 kb on - strand, within DZA65_RS06365 at 1324.533 kb on + strand, within DZA65_RS06365 at 1324.567 kb on + strand, within DZA65_RS06365 at 1324.567 kb on + strand, within DZA65_RS06365 at 1324.693 kb on + strand, within DZA65_RS06365 at 1324.694 kb on - strand, within DZA65_RS06365 at 1324.694 kb on - strand, within DZA65_RS06365 at 1324.694 kb on - strand, within DZA65_RS06365 at 1324.694 kb on - strand, within DZA65_RS06365
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,322,283 + DZA65_RS06350 0.67 +0.7 1,322,316 + DZA65_RS06350 0.71 -0.3 1,322,317 - DZA65_RS06350 0.71 -1.3 1,322,338 + DZA65_RS06350 0.74 +0.1 1,322,338 + DZA65_RS06350 0.74 -0.1 1,322,542 + -0.7 1,322,543 - +0.7 1,322,548 + +0.0 1,322,548 + -1.9 1,322,548 + -0.4 1,322,565 + +4.0 1,322,565 + -0.5 1,322,565 + +0.1 1,322,570 - -0.1 1,322,608 - -1.6 1,322,617 + -1.1 1,322,617 + -0.3 1,322,618 - +0.2 1,322,719 - DZA65_RS06355 0.18 -1.6 1,322,752 + DZA65_RS06355 0.23 +0.1 1,322,752 + DZA65_RS06355 0.23 -0.0 1,322,752 + DZA65_RS06355 0.23 -0.3 1,322,753 - DZA65_RS06355 0.23 -1.9 1,322,800 + DZA65_RS06355 0.30 -0.0 1,322,803 - DZA65_RS06355 0.31 +0.8 1,322,803 - DZA65_RS06355 0.31 +0.7 1,322,803 - DZA65_RS06355 0.31 -1.1 1,322,814 + DZA65_RS06355 0.32 +0.2 1,322,814 + DZA65_RS06355 0.32 +0.9 1,322,814 + DZA65_RS06355 0.32 -0.3 1,322,843 + DZA65_RS06355 0.37 -0.7 1,322,875 + DZA65_RS06355 0.42 -0.7 1,322,876 - DZA65_RS06355 0.42 +0.3 1,322,876 - DZA65_RS06355 0.42 +0.4 1,322,876 - DZA65_RS06355 0.42 +0.1 1,322,876 - DZA65_RS06355 0.42 -2.2 1,322,876 - DZA65_RS06355 0.42 +2.2 1,323,118 + DZA65_RS06355 0.80 +0.1 1,323,119 - DZA65_RS06355 0.80 -0.4 1,323,134 + DZA65_RS06355 0.82 +1.3 1,323,135 - DZA65_RS06355 0.82 +2.7 1,323,135 - DZA65_RS06355 0.82 -0.3 1,323,160 + DZA65_RS06355 0.86 -1.1 1,323,160 + DZA65_RS06355 0.86 -0.6 1,323,160 + DZA65_RS06355 0.86 +0.0 1,323,160 + DZA65_RS06355 0.86 +0.8 1,323,161 - DZA65_RS06355 0.86 -0.7 1,323,200 + -1.6 1,323,201 - -0.3 1,323,201 - -1.3 1,323,214 + -1.6 1,323,215 - -0.0 1,323,215 - -0.3 1,323,250 + +0.5 1,323,250 + -0.0 1,323,250 + -0.1 1,323,251 - +0.0 1,323,254 - +1.4 1,323,254 - -0.9 1,323,254 - +1.0 1,323,505 + DZA65_RS06360 0.42 +0.5 1,323,505 + DZA65_RS06360 0.42 +1.3 1,323,506 - DZA65_RS06360 0.42 +1.4 1,323,506 - DZA65_RS06360 0.42 +0.3 1,323,697 + DZA65_RS06360 0.70 +0.7 1,323,697 + DZA65_RS06360 0.70 +1.6 1,323,697 + DZA65_RS06360 0.70 -0.9 1,323,808 + DZA65_RS06360 0.86 +1.0 1,323,950 + +0.7 1,323,950 + -2.3 1,323,950 + -0.9 1,323,951 - +0.7 1,323,951 - -0.3 1,323,951 - -1.1 1,323,951 - +0.1 1,324,162 + DZA65_RS06365 0.11 -0.3 1,324,162 + DZA65_RS06365 0.11 +0.0 1,324,162 + DZA65_RS06365 0.11 +0.3 1,324,162 + DZA65_RS06365 0.11 -0.5 1,324,162 + DZA65_RS06365 0.11 -2.1 1,324,222 + DZA65_RS06365 0.13 -2.4 1,324,222 + DZA65_RS06365 0.13 +0.5 1,324,222 + DZA65_RS06365 0.13 +0.1 1,324,223 - DZA65_RS06365 0.13 +0.3 1,324,223 - DZA65_RS06365 0.13 -1.4 1,324,223 - DZA65_RS06365 0.13 -0.5 1,324,350 - DZA65_RS06365 0.19 -1.9 1,324,473 + DZA65_RS06365 0.24 +1.0 1,324,474 - DZA65_RS06365 0.24 +0.3 1,324,476 + DZA65_RS06365 0.24 -0.3 1,324,476 + DZA65_RS06365 0.24 -1.9 1,324,477 - DZA65_RS06365 0.24 -0.1 1,324,477 - DZA65_RS06365 0.24 -0.1 1,324,486 + DZA65_RS06365 0.24 -1.7 1,324,486 + DZA65_RS06365 0.24 -0.6 1,324,486 + DZA65_RS06365 0.24 +2.0 1,324,486 + DZA65_RS06365 0.24 -1.1 1,324,486 + DZA65_RS06365 0.24 -0.4 1,324,488 + DZA65_RS06365 0.24 -1.4 1,324,488 + DZA65_RS06365 0.24 +0.9 1,324,488 + DZA65_RS06365 0.24 -1.1 1,324,489 - DZA65_RS06365 0.24 -0.9 1,324,489 - DZA65_RS06365 0.24 -1.6 1,324,489 - DZA65_RS06365 0.24 +0.7 1,324,489 - DZA65_RS06365 0.24 +0.7 1,324,489 - DZA65_RS06365 0.24 -0.9 1,324,489 - DZA65_RS06365 0.24 -0.3 1,324,489 - DZA65_RS06365 0.24 -1.1 1,324,489 - DZA65_RS06365 0.24 +1.0 1,324,528 + DZA65_RS06365 0.26 -0.7 1,324,529 - DZA65_RS06365 0.26 +0.1 1,324,529 - DZA65_RS06365 0.26 -0.1 1,324,529 - DZA65_RS06365 0.26 +0.7 1,324,529 - DZA65_RS06365 0.26 +0.7 1,324,529 - DZA65_RS06365 0.26 +1.2 1,324,529 - DZA65_RS06365 0.26 -0.1 1,324,533 + DZA65_RS06365 0.26 -1.0 1,324,567 + DZA65_RS06365 0.27 +0.2 1,324,567 + DZA65_RS06365 0.27 +0.1 1,324,693 + DZA65_RS06365 0.33 -0.6 1,324,694 - DZA65_RS06365 0.33 +1.0 1,324,694 - DZA65_RS06365 0.33 +0.4 1,324,694 - DZA65_RS06365 0.33 +1.7 1,324,694 - DZA65_RS06365 0.33 +0.5
Or see this region's nucleotide sequence