Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06025

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,243,991	+		DZA65_RS06020	0.68	-0.9
1,243,991	+		DZA65_RS06020	0.68	+0.4
1,244,014	+		DZA65_RS06020	0.69	-1.2
1,244,014	+		DZA65_RS06020	0.69	+0.7
1,244,089	+		DZA65_RS06020	0.72	-0.8
1,244,120	+		DZA65_RS06020	0.73	-1.0
1,244,120	+		DZA65_RS06020	0.73	-2.1
1,244,121	-		DZA65_RS06020	0.73	-0.1
1,244,264	+		DZA65_RS06020	0.79	-0.5
1,244,264	+		DZA65_RS06020	0.79	+0.7
1,244,264	+		DZA65_RS06020	0.79	+0.1
1,244,264	+				-0.3
1,244,265	-		DZA65_RS06020	0.79	+2.1
1,244,751	-				+2.3
1,244,829	+				+0.4
1,244,834	+				+0.7
1,244,835	-				-0.8
1,244,866	+				-0.8
1,244,866	+				+0.7
1,244,866	+				+0.3
1,244,866	+				-0.2
1,244,866	+				+0.9
1,244,866	+				+0.0
1,244,867	-				+0.7
1,244,867	-				+0.5
1,244,867	-				+0.7
1,244,885	+				-0.3
1,244,886	-				+1.9
1,244,886	-				-0.8
1,244,891	+				+0.6
1,244,891	+				-0.8
1,244,891	+				-1.6
1,244,892	-				+0.7
1,244,917	+				-0.3
1,244,917	+				-0.5
1,244,917	+				+0.4
1,244,918	-				-0.4
1,244,918	-				+0.3
1,244,920	+				-0.4
1,244,920	+				+0.7
1,244,921	-				+0.2
1,244,921	-				+0.7
1,244,921	-				-1.0
1,244,921	-				+0.0
1,244,921	-				-1.8
1,244,921	-				-1.1
1,244,926	+				-1.3
1,244,926	+				-0.9
1,244,926	+				+1.0
1,244,926	+				+0.4
1,244,927	-				+1.2
1,244,927	-				+0.0
1,244,927	-				-0.1
1,244,927	-				+0.2
1,245,030	+		DZA65_RS06025	0.30	-1.1
1,245,030	+		DZA65_RS06025	0.30	-0.7
1,245,030	+		DZA65_RS06025	0.30	-0.3
1,245,031	-		DZA65_RS06025	0.31	+0.2
1,245,174	-		DZA65_RS06025	0.83	+0.6
1,245,224	+				-0.8
1,245,225	-				-2.0
1,245,225	-				-0.2
1,245,225	-				-0.2
1,245,225	-				+1.2
1,245,225	-				-0.3
1,245,228	+				-0.3
1,245,269	+				+0.4
1,245,269	+				+0.5
1,245,269	+				+0.1
1,245,270	-				+0.3
1,245,270	-				+0.6
1,245,290	+				+0.4
1,245,295	+				-1.3
1,245,296	-				+1.3
1,245,296	-				-0.3
1,245,296	-				-0.1
1,245,300	+				-1.3
1,245,300	+				-0.1
1,245,300	+				+0.5
1,245,300	+				+0.0
1,245,300	+				+0.4
1,245,300	+				+0.7
1,245,300	+				-1.4
1,245,300	+				+0.0
1,245,301	-				+0.0
1,245,301	-				+0.0
1,245,302	+				-0.6
1,245,302	+				-1.0
1,245,302	+				+1.0
1,245,302	+				-0.8
1,245,302	+				+0.0
1,245,302	+				-0.6
1,245,302	+				+0.4
1,245,302	+				-2.8
1,245,302	+				+0.2
1,245,302	+				-2.0
1,245,303	-				+0.7
1,245,303	-				-0.5
1,245,303	-				-0.3
1,245,303	-				-1.8
1,245,303	-				+1.5
1,245,303	-				+1.0
1,245,317	+				+0.0
1,245,317	+				+0.7
1,245,317	+				+0.4
1,245,317	+				+0.7
1,245,318	-				-0.3
1,245,318	-				-0.3
1,245,318	-				+1.5
1,245,318	-				+0.1
1,245,318	-				-0.7
1,245,346	-				-1.3
1,245,352	-				-1.0
1,245,357	+				+1.6
1,245,368	+				-0.3
1,245,368	+				-0.7
1,245,369	-				+0.1
1,245,369	-				-0.7
1,245,398	+				-0.7
1,245,398	+				+0.0
1,245,398	+				+0.4
1,245,398	+				+0.1
1,245,398	+				+0.2
1,245,399	-				-1.2
1,245,399	-				-1.1
1,245,453	+				+2.6
1,245,454	-				+0.3
1,245,454	-				+2.9
1,245,454	-				+0.7
1,245,474	+				-0.8
1,245,474	+				+0.3
1,245,474	+				-0.4
1,245,474	+				-3.0
1,245,474	+				-0.7
1,245,475	-				-1.8
1,245,475	-				+0.7
1,245,475	-				-1.0
1,245,475	-				-1.7
1,245,571	+				+0.0
1,245,572	-				-1.3
1,245,651	-				-3.2
1,245,721	+		DZA65_RS06030	0.13	-1.8
1,245,721	+		DZA65_RS06030	0.13	-0.1
1,245,721	+		DZA65_RS06030	0.13	-0.3
1,245,721	+		DZA65_RS06030	0.13	-0.7
1,245,721	+		DZA65_RS06030	0.13	-0.6
1,245,721	+		DZA65_RS06030	0.13	-0.3
1,245,721	+		DZA65_RS06030	0.13	-2.7
1,245,721	+		DZA65_RS06030	0.13	+0.0
1,245,722	-		DZA65_RS06030	0.13	-2.1
1,245,722	-		DZA65_RS06030	0.13	-1.7
1,245,722	-		DZA65_RS06030	0.13	-2.1
1,245,722	-		DZA65_RS06030	0.13	+0.2
1,245,722	-		DZA65_RS06030	0.13	-1.6
1,245,722	-		DZA65_RS06030	0.13	-1.6
1,245,722	-		DZA65_RS06030	0.13	-0.1
1,245,722	-		DZA65_RS06030	0.13	-1.4
1,245,723	+		DZA65_RS06030	0.13	-0.3
1,245,723	+		DZA65_RS06030	0.13	+1.2
1,245,723	+		DZA65_RS06030	0.13	-0.3
1,245,723	+		DZA65_RS06030	0.13	-0.8
1,245,723	+		DZA65_RS06030	0.13	-2.5
1,245,723	+		DZA65_RS06030	0.13	+0.4
1,245,723	+		DZA65_RS06030	0.13	-0.5
1,245,723	+		DZA65_RS06030	0.13	-0.3
1,245,723	+		DZA65_RS06030	0.13	-0.4
1,245,723	+		DZA65_RS06030	0.13	-1.0
1,245,723	+		DZA65_RS06030	0.13	-1.4
1,245,724	-		DZA65_RS06030	0.13	-1.1
1,245,724	-		DZA65_RS06030	0.13	-1.0
1,245,724	-		DZA65_RS06030	0.13	+2.7
1,245,738	+		DZA65_RS06030	0.14	+0.3
1,245,738	+		DZA65_RS06030	0.14	-2.1
1,245,784	+		DZA65_RS06030	0.16	-0.8
1,245,784	+		DZA65_RS06030	0.16	+0.3
1,245,785	-		DZA65_RS06030	0.16	-0.3
1,245,792	+		DZA65_RS06030	0.17	-2.8
1,245,792	+		DZA65_RS06030	0.17	-0.7
1,245,808	-		DZA65_RS06030	0.18	-0.0
1,245,861	+		DZA65_RS06030	0.21	-0.5
1,245,862	-		DZA65_RS06030	0.21	-0.3
1,245,862	-		DZA65_RS06030	0.21	+0.0
1,245,882	+		DZA65_RS06030	0.22	-1.6
1,245,882	+		DZA65_RS06030	0.22	-1.3
1,245,882	+		DZA65_RS06030	0.22	-0.6
1,245,882	+		DZA65_RS06030	0.22	+0.3
1,245,882	+		DZA65_RS06030	0.22	-2.5
1,245,882	+		DZA65_RS06030	0.22	+0.1
1,245,882	+		DZA65_RS06030	0.22	-2.2
1,245,882	+		DZA65_RS06030	0.22	-1.8
1,245,882	+		DZA65_RS06030	0.22	-0.6
1,245,882	+		DZA65_RS06030	0.22	-3.0
1,245,882	+		DZA65_RS06030	0.22	-2.5
1,245,882	+		DZA65_RS06030	0.22	-0.8
1,245,882	+		DZA65_RS06030	0.22	-1.1
1,245,883	-		DZA65_RS06030	0.22	-0.9
1,245,883	-		DZA65_RS06030	0.22	-1.1
1,245,883	-		DZA65_RS06030	0.22	-0.8
1,245,883	-		DZA65_RS06030	0.22	-1.3
1,245,883	-		DZA65_RS06030	0.22	-2.5
1,245,883	-		DZA65_RS06030	0.22	-0.3
1,245,883	-		DZA65_RS06030	0.22	-2.3
1,245,883	-		DZA65_RS06030	0.22	+0.3
1,245,887	-		DZA65_RS06030	0.22	-0.1
1,245,887	-		DZA65_RS06030	0.22	-0.3
1,245,887	-		DZA65_RS06030	0.22	+0.5
1,245,928	+		DZA65_RS06030	0.24	-1.4
1,245,928	+		DZA65_RS06030	0.24	-0.9
1,245,929	-		DZA65_RS06030	0.24	+0.7
1,245,987	+		DZA65_RS06030	0.27	-0.9
1,245,987	+		DZA65_RS06030	0.27	-0.6
1,245,988	-		DZA65_RS06030	0.27	-2.0
1,245,998	+		DZA65_RS06030	0.28	+0.3
1,245,998	+		DZA65_RS06030	0.28	-0.5
1,245,998	+		DZA65_RS06030	0.28	-1.8
1,246,065	+		DZA65_RS06030	0.31	-1.3
1,246,065	+		DZA65_RS06030	0.31	-0.7
1,246,065	+		DZA65_RS06030	0.31	-1.0
1,246,066	-		DZA65_RS06030	0.31	-1.4
1,246,177	+		DZA65_RS06030	0.37	-0.8
1,246,177	+		DZA65_RS06030	0.37	-1.6
1,246,177	+		DZA65_RS06030	0.37	-0.3
1,246,177	+		DZA65_RS06030	0.37	+0.4
1,246,177	+				+0.2
1,246,177	+		DZA65_RS06030	0.37	-1.0
1,246,177	+		DZA65_RS06030	0.37	-1.8
1,246,177	+		DZA65_RS06030	0.37	-1.3
1,246,177	+		DZA65_RS06030	0.37	+0.1
1,246,177	+		DZA65_RS06030	0.37	-0.3
1,246,177	+		DZA65_RS06030	0.37	+0.5
1,246,178	-		DZA65_RS06030	0.37	+0.2
1,246,178	-		DZA65_RS06030	0.37	-1.0
1,246,178	-				-1.6
1,246,178	-		DZA65_RS06030	0.37	+0.2
1,246,178	-		DZA65_RS06030	0.37	+0.2
1,246,178	-		DZA65_RS06030	0.37	-0.6
1,246,178	-		DZA65_RS06030	0.37	+1.0
1,246,178	-		DZA65_RS06030	0.37	-0.3
1,246,178	-		DZA65_RS06030	0.37	-1.1
1,246,178	-		DZA65_RS06030	0.37	-1.7
1,246,178	-		DZA65_RS06030	0.37	-2.8
1,246,179	+		DZA65_RS06030	0.37	+1.3
1,246,179	+		DZA65_RS06030	0.37	-0.3
1,246,179	+				+0.2
1,246,179	+		DZA65_RS06030	0.37	-0.6
1,246,180	-		DZA65_RS06030	0.37	-1.3
1,246,180	-		DZA65_RS06030	0.37	-0.9
1,246,180	-		DZA65_RS06030	0.37	-1.3