Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05225

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,072,609	-				-0.7
1,072,616	+				-0.5
1,072,627	+				+0.4
1,072,627	+				-1.1
1,072,640	+				+1.2
1,072,640	+				+0.5
1,072,640	+				-2.0
1,072,640	+				+0.2
1,072,641	-				-1.2
1,072,641	-				-0.5
1,072,641	-				-0.6
1,072,671	+				+2.2
1,072,671	+				-0.8
1,072,671	+				+0.5
1,072,671	+				+2.0
1,072,675	+				-0.0
1,072,676	-				+0.2
1,072,689	+				+0.5
1,072,704	+				-0.3
1,072,705	-				-0.7
1,072,714	-				-0.5
1,072,725	+				-0.5
1,072,726	-				-0.2
1,072,752	+				-0.5
1,072,752	+				-1.9
1,072,752	+				+0.9
1,072,752	+				-1.5
1,072,752	+				+0.0
1,072,753	-				-0.2
1,072,753	-				+1.8
1,072,753	-				-0.5
1,072,790	+				-1.0
1,072,790	+				+0.5
1,072,791	-				+0.2
1,072,791	-				-0.2
1,072,791	-				-1.0
1,072,791	-				-1.1
1,072,791	-				-0.2
1,072,801	+				-2.7
1,072,933	+				+0.2
1,072,933	+				-0.5
1,072,933	+				-0.3
1,072,985	-				-0.8
1,072,985	-				-2.0
1,073,075	-				-0.1
1,073,075	-				-0.2
1,073,087	+				-0.6
1,073,088	-				-0.0
1,073,088	-				-0.1
1,073,151	+				-1.2
1,073,151	+				+0.8
1,073,151	+				+0.2
1,073,151	+				-0.4
1,073,151	+				+0.8
1,073,151	+				+1.2
1,073,152	-				-0.3
1,073,172	-				+0.5
1,073,172	-				-0.1
1,073,186	-				-1.1
1,073,186	-				-2.0
1,073,208	+				+1.2
1,073,208	+				-0.0
1,073,209	-				-1.8
1,073,209	-				+1.2
1,073,290	-				+0.8
1,073,333	-				+0.2
1,073,348	+				-1.8
1,073,367	+				+0.8
1,073,367	+				-0.2
1,073,368	-				-0.2
1,073,368	-				-0.4
1,073,400	+				-2.0
1,073,400	+				+1.0
1,073,400	+				+0.5
1,073,400	+				+0.2
1,073,400	+				-0.6
1,073,401	-				+0.4
1,073,401	-				+0.6
1,073,401	-				-0.2
1,073,401	-				-3.0
1,073,422	-				-1.4
1,073,436	+				+0.4
1,073,436	+				-2.0
1,073,437	-				-1.8
1,073,437	-				+0.5
1,073,482	+				+0.8
1,073,482	+				-1.4
1,073,482	+				-0.3
1,073,482	+				+1.8
1,073,483	-				+0.2
1,073,483	-				-0.4
1,073,483	-				-0.1
1,073,483	-				-1.3
1,073,494	+				-1.0
1,073,494	+				-1.8
1,073,495	-				+1.3
1,073,495	-				+0.2
1,073,495	-				-0.6
1,073,512	+				-0.2
1,073,512	+				+0.5
1,073,512	+				-0.2
1,073,512	+				-0.3
1,073,512	+				+0.8
1,073,512	+				+0.6
1,073,512	+				+1.8
1,073,512	+				-0.8
1,073,512	+				-0.5
1,073,512	+				+0.0
1,073,513	-				-1.3
1,073,518	+				-0.0
1,073,519	-				+0.8
1,073,546	+				+0.8
1,073,546	+				+0.5
1,073,546	+				+1.6
1,073,546	+				+0.2
1,073,546	+				-1.5
1,073,546	+				+0.1
1,073,546	+				-0.2
1,073,546	+				+1.0
1,073,547	-				+0.2
1,073,547	-				+0.8
1,073,547	-				-1.2
1,073,547	-				+0.4
1,073,547	-				-0.3
1,073,547	-				-0.8
1,073,547	-				+1.4
1,073,547	-				-0.2
1,073,577	-				-0.0
1,073,577	-				-1.8
1,073,589	+				-1.1
1,073,603	-				+0.0
1,073,626	-				-1.4
1,073,626	-				-0.2
1,073,668	+				+0.2
1,073,668	+				+0.7
1,073,668	+				-0.6
1,073,669	-				-0.5
1,073,782	+				-1.9
1,073,782	+				-1.5
1,073,782	+				+0.1
1,073,782	+				-0.1
1,073,782	+				-0.3
1,073,782	+				-1.0
1,073,782	+				+0.1
1,073,782	+				+0.0
1,073,783	-				+0.8
1,073,783	-				-0.3
1,073,783	-				+0.5
1,073,783	-				+0.8
1,073,783	-				+0.3
1,073,783	-				+0.2
1,073,783	-				-2.0
1,073,785	+				+2.0
1,073,785	+				-0.6
1,073,785	+				+0.2
1,073,786	-				+0.1
1,073,786	-				-0.2
1,073,786	-				+0.2
1,073,786	-				+0.0
1,073,876	+		DZA65_RS05225	0.14	-0.1
1,073,877	-		DZA65_RS05225	0.14	+1.2
1,073,877	-		DZA65_RS05225	0.14	-0.1
1,073,921	+		DZA65_RS05225	0.16	+0.4
1,073,921	+		DZA65_RS05225	0.16	+0.8
1,073,921	+		DZA65_RS05225	0.16	-2.2
1,073,921	+		DZA65_RS05225	0.16	+1.3
1,073,921	+		DZA65_RS05225	0.16	-0.0
1,073,921	+		DZA65_RS05225	0.16	-1.0
1,073,921	+		DZA65_RS05225	0.16	-1.4
1,073,921	+		DZA65_RS05225	0.16	+1.0
1,073,922	-		DZA65_RS05225	0.16	-1.2
1,073,922	-		DZA65_RS05225	0.16	+0.1
1,073,922	-		DZA65_RS05225	0.16	-2.4
1,073,922	-		DZA65_RS05225	0.16	+0.3
1,073,922	-		DZA65_RS05225	0.16	-0.5
1,073,922	-		DZA65_RS05225	0.16	+0.9
1,074,017	+		DZA65_RS05225	0.20	+0.3
1,074,018	-		DZA65_RS05225	0.20	+0.3
1,074,018	-		DZA65_RS05225	0.20	-0.0
1,074,028	+		DZA65_RS05225	0.21	-0.2
1,074,028	+		DZA65_RS05225	0.21	+0.4
1,074,028	+		DZA65_RS05225	0.21	-0.2
1,074,029	-		DZA65_RS05225	0.21	+0.5
1,074,029	-		DZA65_RS05225	0.21	+0.6
1,074,043	+		DZA65_RS05225	0.22	-2.7
1,074,043	+		DZA65_RS05225	0.22	-2.0
1,074,043	+		DZA65_RS05225	0.22	-0.1
1,074,044	-		DZA65_RS05225	0.22	-2.0
1,074,044	-		DZA65_RS05225	0.22	+1.1
1,074,044	-		DZA65_RS05225	0.22	+0.5
1,074,098	-		DZA65_RS05225	0.24	+0.2
1,074,098	-		DZA65_RS05225	0.24	+0.2
1,074,147	-		DZA65_RS05225	0.26	-0.2
1,074,290	+		DZA65_RS05225	0.33	-2.0
1,074,350	-		DZA65_RS05225	0.36	+0.2
1,074,446	+		DZA65_RS05225	0.40	-0.6
1,074,446	+		DZA65_RS05225	0.40	+0.5
1,074,446	+		DZA65_RS05225	0.40	-1.7
1,074,446	+		DZA65_RS05225	0.40	-0.5
1,074,446	+		DZA65_RS05225	0.40	-1.5
1,074,447	-		DZA65_RS05225	0.40	-0.0
1,074,447	-		DZA65_RS05225	0.40	+1.8
1,074,447	-		DZA65_RS05225	0.40	+0.2
1,074,447	-		DZA65_RS05225	0.40	-0.8
1,074,457	+		DZA65_RS05225	0.41	-1.5
1,074,457	+		DZA65_RS05225	0.41	-0.3
1,074,457	+		DZA65_RS05225	0.41	+0.5
1,074,457	+		DZA65_RS05225	0.41	+0.6
1,074,457	+		DZA65_RS05225	0.41	-1.0
1,074,457	+		DZA65_RS05225	0.41	-0.5
1,074,457	+		DZA65_RS05225	0.41	+0.8
1,074,458	-		DZA65_RS05225	0.41	+0.0
1,074,458	-		DZA65_RS05225	0.41	-0.5
1,074,458	-		DZA65_RS05225	0.41	-0.4
1,074,458	-		DZA65_RS05225	0.41	-1.2
1,074,458	-		DZA65_RS05225	0.41	+0.0
1,074,461	+		DZA65_RS05225	0.41	-0.8
1,074,461	+		DZA65_RS05225	0.41	-0.2
1,074,461	+		DZA65_RS05225	0.41	-0.7
1,074,461	+		DZA65_RS05225	0.41	+0.0
1,074,461	+		DZA65_RS05225	0.41	-1.5
1,074,461	+		DZA65_RS05225	0.41	+0.8
1,074,461	+		DZA65_RS05225	0.41	-0.8
1,074,461	+		DZA65_RS05225	0.41	-0.1
1,074,461	+		DZA65_RS05225	0.41	-1.5
1,074,461	+		DZA65_RS05225	0.41	-1.8
1,074,461	+		DZA65_RS05225	0.41	-1.2
1,074,462	-		DZA65_RS05225	0.41	+0.2
1,074,462	-		DZA65_RS05225	0.41	+0.8
1,074,462	-		DZA65_RS05225	0.41	+1.1
1,074,462	-		DZA65_RS05225	0.41	-1.5
1,074,462	-		DZA65_RS05225	0.41	-0.8
1,074,462	-		DZA65_RS05225	0.41	+0.2
1,074,462	-		DZA65_RS05225	0.41	+1.2
1,074,462	-				-1.8
1,074,462	-		DZA65_RS05225	0.41	+0.8
1,074,462	-		DZA65_RS05225	0.41	+0.1
1,074,462	-		DZA65_RS05225	0.41	-0.2
1,074,484	+		DZA65_RS05225	0.42	+0.3
1,074,484	+		DZA65_RS05225	0.42	+0.3
1,074,485	-		DZA65_RS05225	0.42	-1.0
1,074,485	-		DZA65_RS05225	0.42	+1.6
1,074,485	-		DZA65_RS05225	0.42	-1.0
1,074,485	-		DZA65_RS05225	0.42	-0.8
1,074,487	+		DZA65_RS05225	0.42	+1.1
1,074,506	+		DZA65_RS05225	0.43	+0.8
1,074,506	+		DZA65_RS05225	0.43	+0.5
1,074,506	+		DZA65_RS05225	0.43	+0.4
1,074,507	-		DZA65_RS05225	0.43	+0.2
1,074,507	-		DZA65_RS05225	0.43	-0.3
1,074,507	-		DZA65_RS05225	0.43	-0.1
1,074,507	-		DZA65_RS05225	0.43	-0.1
1,074,507	-		DZA65_RS05225	0.43	+1.2
1,074,507	-		DZA65_RS05225	0.43	-1.2
1,074,507	-		DZA65_RS05225	0.43	+0.8
1,074,507	-		DZA65_RS05225	0.43	+1.4
1,074,537	-		DZA65_RS05225	0.44	+0.1
1,074,631	+		DZA65_RS05225	0.49	-1.2
1,074,632	-		DZA65_RS05225	0.49	+2.4
1,074,632	-		DZA65_RS05225	0.49	+0.1
1,074,685	+		DZA65_RS05225	0.51	+0.5
1,074,685	+		DZA65_RS05225	0.51	-0.6
1,074,685	+		DZA65_RS05225	0.51	+0.3
1,074,686	-		DZA65_RS05225	0.51	+0.5
1,074,686	-		DZA65_RS05225	0.51	-1.1
1,074,736	+		DZA65_RS05225	0.54	+0.0
1,074,737	-		DZA65_RS05225	0.54	+1.3
1,074,737	-		DZA65_RS05225	0.54	+0.5
1,074,796	+		DZA65_RS05225	0.56	-0.2
1,074,865	+		DZA65_RS05225	0.60	-2.0
1,075,019	+		DZA65_RS05225	0.67	-0.7
1,075,020	-		DZA65_RS05225	0.67	-0.5
1,075,034	+		DZA65_RS05225	0.68	+0.5
1,075,034	+		DZA65_RS05225	0.68	+0.2
1,075,034	+		DZA65_RS05225	0.68	+0.2
1,075,034	+		DZA65_RS05225	0.68	+1.2
1,075,035	-		DZA65_RS05225	0.68	+0.2
1,075,035	-		DZA65_RS05225	0.68	+0.4
1,075,098	-		DZA65_RS05225	0.71	-1.3
1,075,098	-		DZA65_RS05225	0.71	-0.2
1,075,098	-		DZA65_RS05225	0.71	-0.2
1,075,098	-		DZA65_RS05225	0.71	+0.8
1,075,098	-		DZA65_RS05225	0.71	+0.0
1,075,099	+		DZA65_RS05225	0.71	+0.3
1,075,099	+		DZA65_RS05225	0.71	-0.2
1,075,100	-		DZA65_RS05225	0.71	+0.2
1,075,100	-		DZA65_RS05225	0.71	+0.0
1,075,100	-		DZA65_RS05225	0.71	+1.1
1,075,136	+		DZA65_RS05225	0.72	-0.9
1,075,136	+		DZA65_RS05225	0.72	-0.3
1,075,137	-		DZA65_RS05225	0.72	-0.5
1,075,307	+		DZA65_RS05225	0.80	-0.0
1,075,316	+		DZA65_RS05225	0.81	-0.2
1,075,316	+		DZA65_RS05225	0.81	+2.2
1,075,317	-		DZA65_RS05225	0.81	-1.0
1,075,339	+		DZA65_RS05225	0.82	-0.1
1,075,339	+		DZA65_RS05225	0.82	+0.1
1,075,339	+		DZA65_RS05225	0.82	-0.2
1,075,340	-		DZA65_RS05225	0.82	+0.3
1,075,377	-		DZA65_RS05225	0.83	-0.0
1,075,472	+		DZA65_RS05225	0.88	+1.8
1,075,472	+		DZA65_RS05225	0.88	-0.6
1,075,472	+		DZA65_RS05225	0.88	-0.5
1,075,472	+		DZA65_RS05225	0.88	-1.8
1,075,472	+		DZA65_RS05225	0.88	-1.0
1,075,472	+		DZA65_RS05225	0.88	+0.4
1,075,472	+		DZA65_RS05225	0.88	+0.8
1,075,473	-		DZA65_RS05225	0.88	+0.3
1,075,473	-		DZA65_RS05225	0.88	-0.1
1,075,473	-		DZA65_RS05225	0.88	+1.6
1,075,473	-		DZA65_RS05225	0.88	+0.5
1,075,473	-		DZA65_RS05225	0.88	-0.5
1,075,473	-		DZA65_RS05225	0.88	-0.5
1,075,473	-		DZA65_RS05225	0.88	+0.5
1,075,474	+		DZA65_RS05225	0.88	+0.0
1,075,607	+				+1.4
1,075,608	-				+1.4
1,075,608	-				+0.2
1,075,608	-				-0.5
1,075,608	-				+0.1
1,075,673	+				-1.7
1,075,673	+				+1.0
1,075,673	+				+0.8
1,075,674	-				+3.1
1,075,674	-				-0.2
1,075,674	-				-0.6
1,075,674	-				-0.2
1,075,719	+				+1.0
1,075,719	+				-1.0
1,075,719	+				-0.2
1,075,719	+				-0.7
1,075,719	+				+0.2
1,075,720	-				-1.0
1,075,720	-				+1.3
1,075,720	-				+2.2
1,075,790	+				+0.2
1,075,790	+				+0.8
1,075,791	-				-0.2
1,075,791	-				-1.5
1,075,791	-				-0.5
1,075,857	+				+0.2
1,075,858	-				+0.2
1,075,868	+				+1.4
1,075,914	+				-0.8
1,076,011	-		DZA65_RS05230	0.14	-1.4
1,076,153	+		DZA65_RS05230	0.24	-0.5
1,076,153	+		DZA65_RS05230	0.24	-0.8
1,076,153	+		DZA65_RS05230	0.24	+1.2
1,076,153	+		DZA65_RS05230	0.24	+0.5
1,076,154	-		DZA65_RS05230	0.24	-0.2
1,076,154	-		DZA65_RS05230	0.24	+0.8
1,076,154	-		DZA65_RS05230	0.24	+0.1
1,076,154	-		DZA65_RS05230	0.24	+0.2
1,076,154	-		DZA65_RS05230	0.24	-0.1
1,076,154	-		DZA65_RS05230	0.24	-2.2
1,076,208	-		DZA65_RS05230	0.28	+0.1
1,076,212	+		DZA65_RS05230	0.28	+0.8
1,076,213	-		DZA65_RS05230	0.28	+2.8
1,076,294	+		DZA65_RS05230	0.34	+1.8
1,076,295	-		DZA65_RS05230	0.34	+0.5
1,076,295	-		DZA65_RS05230	0.34	+0.6
1,076,295	-		DZA65_RS05230	0.34	-0.5
1,076,340	+		DZA65_RS05230	0.37	+0.9
1,076,359	-		DZA65_RS05230	0.38	-2.0
1,076,360	+		DZA65_RS05230	0.38	-0.0
1,076,360	+		DZA65_RS05230	0.38	+1.0
1,076,360	+		DZA65_RS05230	0.38	+1.3
1,076,360	+		DZA65_RS05230	0.38	-2.0
1,076,360	+		DZA65_RS05230	0.38	+0.5
1,076,360	+		DZA65_RS05230	0.38	-0.8
1,076,360	+		DZA65_RS05230	0.38	+0.5
1,076,360	+		DZA65_RS05230	0.38	-0.2
1,076,360	+		DZA65_RS05230	0.38	-1.5
1,076,360	+		DZA65_RS05230	0.38	+1.5
1,076,360	+		DZA65_RS05230	0.38	-1.0
1,076,360	+		DZA65_RS05230	0.38	-0.2
1,076,361	-		DZA65_RS05230	0.38	-0.8
1,076,361	-		DZA65_RS05230	0.38	-0.2
1,076,361	-		DZA65_RS05230	0.38	+0.5
1,076,361	-		DZA65_RS05230	0.38	+0.1
1,076,361	-		DZA65_RS05230	0.38	-0.2
1,076,361	-		DZA65_RS05230	0.38	+0.6
1,076,361	-		DZA65_RS05230	0.38	+1.8
1,076,415	-		DZA65_RS05230	0.42	-1.8
1,076,462	+		DZA65_RS05230	0.45	-0.5
1,076,462	+		DZA65_RS05230	0.45	-1.0
1,076,462	+		DZA65_RS05230	0.45	+0.1
1,076,463	-		DZA65_RS05230	0.45	-1.7
1,076,463	-		DZA65_RS05230	0.45	-2.0
1,076,463	-		DZA65_RS05230	0.45	-0.2
1,076,463	-		DZA65_RS05230	0.45	+0.1
1,076,463	-		DZA65_RS05230	0.45	-1.5
1,076,526	+		DZA65_RS05230	0.50	-1.1
1,076,526	+		DZA65_RS05230	0.50	+0.5
1,076,641	-		DZA65_RS05230	0.58	-1.8