Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05075

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,044,766	+				-1.5
1,044,767	-				+0.9
1,044,767	-				-1.2
1,044,860	+		DZA65_RS05070	0.14	-1.2
1,044,868	-		DZA65_RS05070	0.15	+1.4
1,044,959	+		DZA65_RS05070	0.24	-0.1
1,045,040	+		DZA65_RS05070	0.33	+0.3
1,045,040	+		DZA65_RS05070	0.33	-0.1
1,045,040	+		DZA65_RS05070	0.33	-0.2
1,045,041	-		DZA65_RS05070	0.33	-0.1
1,045,041	-		DZA65_RS05070	0.33	+0.8
1,045,041	-		DZA65_RS05070	0.33	-0.2
1,045,122	+		DZA65_RS05070	0.41	+0.8
1,045,122	+		DZA65_RS05070	0.41	+1.3
1,045,122	+		DZA65_RS05070	0.41	+0.9
1,045,123	-		DZA65_RS05070	0.41	+0.5
1,045,123	-		DZA65_RS05070	0.41	-0.4
1,045,124	+		DZA65_RS05070	0.41	-2.4
1,045,125	-		DZA65_RS05070	0.41	+1.3
1,045,179	+		DZA65_RS05070	0.47	-1.0
1,045,190	+		DZA65_RS05070	0.48	-0.8
1,045,191	-		DZA65_RS05070	0.48	+1.8
1,045,191	-		DZA65_RS05070	0.48	-0.6
1,045,215	+		DZA65_RS05070	0.50	-0.5
1,045,328	+		DZA65_RS05070	0.62	-0.3
1,045,328	+		DZA65_RS05070	0.62	-1.2
1,045,328	+		DZA65_RS05070	0.62	+0.8
1,045,329	-		DZA65_RS05070	0.62	-1.8
1,045,329	-		DZA65_RS05070	0.62	-1.8
1,045,329	-		DZA65_RS05070	0.62	-0.2
1,045,329	-		DZA65_RS05070	0.62	-0.4
1,045,344	+		DZA65_RS05070	0.63	-0.8
1,045,344	+		DZA65_RS05070	0.63	+0.8
1,045,344	+		DZA65_RS05070	0.63	+1.8
1,045,344	+		DZA65_RS05070	0.63	-0.5
1,045,345	-		DZA65_RS05070	0.64	-0.1
1,045,345	-		DZA65_RS05070	0.64	-0.4
1,045,345	-		DZA65_RS05070	0.64	+0.2
1,045,380	+		DZA65_RS05070	0.67	-0.7
1,045,380	+		DZA65_RS05070	0.67	+0.2
1,045,380	+		DZA65_RS05070	0.67	-1.5
1,045,380	+		DZA65_RS05070	0.67	+0.8
1,045,380	+		DZA65_RS05070	0.67	-0.5
1,045,380	+		DZA65_RS05070	0.67	+0.3
1,045,380	+		DZA65_RS05070	0.67	+0.0
1,045,381	-		DZA65_RS05070	0.67	-1.7
1,045,381	-		DZA65_RS05070	0.67	+1.4
1,045,382	+		DZA65_RS05070	0.67	-0.1
1,045,382	+		DZA65_RS05070	0.67	+0.1
1,045,382	+		DZA65_RS05070	0.67	-0.2
1,045,382	+		DZA65_RS05070	0.67	+0.1
1,045,382	+		DZA65_RS05070	0.67	-0.0
1,045,382	+		DZA65_RS05070	0.67	+0.1
1,045,382	+		DZA65_RS05070	0.67	-0.8
1,045,383	-		DZA65_RS05070	0.67	+2.8
1,045,383	-		DZA65_RS05070	0.67	+1.0
1,045,383	-		DZA65_RS05070	0.67	-0.1
1,045,383	-		DZA65_RS05070	0.67	+0.5
1,045,383	-		DZA65_RS05070	0.67	-0.9
1,045,383	-		DZA65_RS05070	0.67	+1.9
1,045,383	-		DZA65_RS05070	0.67	+0.2
1,045,383	-		DZA65_RS05070	0.67	+0.2
1,045,396	+		DZA65_RS05070	0.69	-0.4
1,045,397	-		DZA65_RS05070	0.69	+0.1
1,045,397	-		DZA65_RS05070	0.69	+1.1
1,045,441	+		DZA65_RS05070	0.73	-1.4
1,045,441	+		DZA65_RS05070	0.73	-1.1
1,045,441	+		DZA65_RS05070	0.73	-0.4
1,045,441	+		DZA65_RS05070	0.73	-0.0
1,045,441	+		DZA65_RS05070	0.73	+1.0
1,045,441	+		DZA65_RS05070	0.73	-0.2
1,045,441	+		DZA65_RS05070	0.73	-0.2
1,045,441	+		DZA65_RS05070	0.73	-0.5
1,045,441	+		DZA65_RS05070	0.73	-1.4
1,045,441	+		DZA65_RS05070	0.73	-1.0
1,045,441	+		DZA65_RS05070	0.73	+0.6
1,045,441	+		DZA65_RS05070	0.73	+0.9
1,045,441	+		DZA65_RS05070	0.73	-0.0
1,045,441	+		DZA65_RS05070	0.73	-0.8
1,045,442	-		DZA65_RS05070	0.73	+1.1
1,045,442	-		DZA65_RS05070	0.73	+0.4
1,045,442	-		DZA65_RS05070	0.73	-0.1
1,045,442	-		DZA65_RS05070	0.73	+0.2
1,045,442	-		DZA65_RS05070	0.73	-0.5
1,045,442	-		DZA65_RS05070	0.73	+1.0
1,045,442	-		DZA65_RS05070	0.73	+0.8
1,045,445	+		DZA65_RS05070	0.74	-0.8
1,045,445	+		DZA65_RS05070	0.74	+0.2
1,045,445	+		DZA65_RS05070	0.74	+1.0
1,045,445	+		DZA65_RS05070	0.74	-2.2
1,045,445	+		DZA65_RS05070	0.74	-1.2
1,045,445	+		DZA65_RS05070	0.74	+0.8
1,045,445	+		DZA65_RS05070	0.74	+0.4
1,045,445	+		DZA65_RS05070	0.74	+1.7
1,045,445	+		DZA65_RS05070	0.74	-1.2
1,045,445	+		DZA65_RS05070	0.74	-0.8
1,045,446	-		DZA65_RS05070	0.74	-0.2
1,045,446	-		DZA65_RS05070	0.74	+1.0
1,045,446	-		DZA65_RS05070	0.74	+1.9
1,045,446	-		DZA65_RS05070	0.74	+0.2
1,045,446	-		DZA65_RS05070	0.74	-0.8
1,045,446	-		DZA65_RS05070	0.74	+0.3
1,045,446	-		DZA65_RS05070	0.74	-0.7
1,045,446	-		DZA65_RS05070	0.74	+1.2
1,045,446	-		DZA65_RS05070	0.74	-1.0
1,045,446	-				+2.4
1,045,446	-		DZA65_RS05070	0.74	-1.7
1,045,450	-		DZA65_RS05070	0.74	+0.0
1,045,450	-		DZA65_RS05070	0.74	+0.8
1,045,450	-		DZA65_RS05070	0.74	-2.0
1,045,450	-		DZA65_RS05070	0.74	+0.2
1,045,626	+				-2.0
1,045,626	+				-1.5
1,045,627	-				+0.6
1,045,639	+				+0.8
1,045,640	-				-0.1
1,045,650	+				-0.0
1,045,650	+				+0.6
1,045,650	+				-0.2
1,045,650	+				-0.0
1,045,686	+				-1.8
1,045,686	+				-1.5
1,045,687	-				+0.7
1,045,687	-				+0.2
1,045,687	-				+0.2
1,045,720	+				-0.1
1,045,721	-				-1.8
1,045,745	+				-0.2
1,045,745	+				+1.4
1,045,746	-				+0.2
1,045,777	+				-2.0
1,045,777	+				-0.2
1,045,777	+				-0.2
1,045,777	+				+0.5
1,045,777	+				-1.2
1,045,778	-				+0.3
1,045,778	-				-0.8
1,045,778	-				+0.4
1,045,789	+				+0.8
1,045,789	+				-0.2
1,045,789	+				+1.8
1,045,790	-				-0.7
1,045,790	-				+0.5
1,045,827	-				-1.7
1,045,827	-				-1.9
1,045,827	-				-0.2
1,045,827	-				-0.1
1,045,827	-				-0.2
1,045,865	-		DZA65_RS05075	0.11	+0.6
1,045,962	+		DZA65_RS05075	0.18	-0.4
1,045,962	+		DZA65_RS05075	0.18	+0.8
1,045,963	-		DZA65_RS05075	0.18	+1.9
1,046,029	-		DZA65_RS05075	0.23	+0.5
1,046,035	+		DZA65_RS05075	0.23	+0.8
1,046,036	-		DZA65_RS05075	0.23	-0.5
1,046,050	+				-1.2
1,046,170	+		DZA65_RS05075	0.33	-2.2
1,046,171	-		DZA65_RS05075	0.33	-2.5
1,046,171	-		DZA65_RS05075	0.33	+0.2
1,046,376	-		DZA65_RS05075	0.48	-0.2
1,046,401	-		DZA65_RS05075	0.50	-0.2
1,046,419	-		DZA65_RS05075	0.51	-0.2
1,046,434	+		DZA65_RS05075	0.52	-0.5
1,046,435	-		DZA65_RS05075	0.52	+0.1
1,046,512	+		DZA65_RS05075	0.58	+0.6
1,046,512	+		DZA65_RS05075	0.58	+0.8
1,046,513	-		DZA65_RS05075	0.58	-0.7
1,046,513	-		DZA65_RS05075	0.58	+0.2
1,046,513	-		DZA65_RS05075	0.58	+0.6
1,046,513	-		DZA65_RS05075	0.58	+1.8
1,046,518	+		DZA65_RS05075	0.58	+0.2
1,046,518	+		DZA65_RS05075	0.58	+0.6
1,046,519	-		DZA65_RS05075	0.58	+0.8
1,046,519	-		DZA65_RS05075	0.58	-0.0
1,046,542	+		DZA65_RS05075	0.60	-0.2
1,046,542	+		DZA65_RS05075	0.60	+0.8
1,046,543	-		DZA65_RS05075	0.60	+0.8
1,046,543	-		DZA65_RS05075	0.60	-0.8
1,046,580	+		DZA65_RS05075	0.63	-1.2
1,046,727	+		DZA65_RS05075	0.73	-2.2
1,046,727	+		DZA65_RS05075	0.73	+1.3
1,046,727	+		DZA65_RS05075	0.73	+0.5
1,046,728	-		DZA65_RS05075	0.73	+1.1
1,046,758	+		DZA65_RS05075	0.76	-0.5
1,046,758	+		DZA65_RS05075	0.76	-1.0
1,046,929	+		DZA65_RS05075	0.88	+0.8
1,046,930	-		DZA65_RS05075	0.88	+0.2
1,047,016	+				-1.0
1,047,016	+				+0.8
1,047,110	+				+0.2
1,047,110	+				-2.2
1,047,111	-				+1.5
1,047,111	-				+0.8
1,047,111	-				-1.2
1,047,111	-				-0.6
1,047,111	-				-0.2
1,047,188	+				+0.4
1,047,188	+				+0.8
1,047,189	-				+0.8
1,047,194	+				-0.2
1,047,194	+				-1.2
1,047,194	+				+0.5
1,047,194	+				-1.5
1,047,195	-				-0.4
1,047,195	-				-1.9
1,047,212	+		DZA65_RS05080	0.11	+0.8
1,047,213	-		DZA65_RS05080	0.12	+0.7
1,047,213	-		DZA65_RS05080	0.12	-0.8
1,047,236	-		DZA65_RS05080	0.20	+1.8
1,047,291	-		DZA65_RS05080	0.40	-0.2
1,047,344	+		DZA65_RS05080	0.60	+0.0
1,047,344	+		DZA65_RS05080	0.60	-0.4
1,047,344	+		DZA65_RS05080	0.60	-0.8
1,047,344	+		DZA65_RS05080	0.60	+0.8
1,047,345	-		DZA65_RS05080	0.60	+1.7
1,047,345	-		DZA65_RS05080	0.60	-0.1
1,047,345	-		DZA65_RS05080	0.60	+2.6
1,047,345	-		DZA65_RS05080	0.60	-1.0
1,047,345	-		DZA65_RS05080	0.60	-0.2
1,047,345	-		DZA65_RS05080	0.60	+0.2
1,047,366	+		DZA65_RS05080	0.68	+1.1
1,047,366	+		DZA65_RS05080	0.68	-0.3
1,047,367	-		DZA65_RS05080	0.68	+0.5
1,047,392	+		DZA65_RS05080	0.77	+0.0
1,047,392	+		DZA65_RS05080	0.77	-2.1
1,047,393	-		DZA65_RS05080	0.78	-0.6
1,047,444	+				-0.1
1,047,444	+				+1.1
1,047,445	-				+2.4
1,047,451	+				+3.4
1,047,452	-				+0.4
1,047,482	+				+1.0
1,047,483	-				-1.5
1,047,483	-				-0.7
1,047,483	-				+0.8
1,047,491	+				-0.0
1,047,491	+				-1.0
1,047,491	+				-0.5
1,047,492	-				+0.9
1,047,492	-				-0.2
1,047,560	+				-2.0
1,047,560	+				-1.5
1,047,561	-				-0.3
1,047,561	-				-3.7
1,047,561	-				+1.0
1,047,561	-				+0.5
1,047,561	-				-0.5
1,047,607	-				-0.6
1,047,607	-				-0.5
1,047,607	-				-1.9
1,047,607	-				+0.2
1,047,660	+		DZA65_RS05085	0.12	+0.3
1,047,661	-		DZA65_RS05085	0.13	-1.4
1,047,661	-		DZA65_RS05085	0.13	-2.0
1,047,675	-		DZA65_RS05085	0.13	-2.4
1,047,694	+		DZA65_RS05085	0.15	-0.5
1,047,694	+		DZA65_RS05085	0.15	-1.1
1,047,694	+		DZA65_RS05085	0.15	-1.1
1,047,694	+		DZA65_RS05085	0.15	+1.6
1,047,694	+		DZA65_RS05085	0.15	+2.6
1,047,694	+		DZA65_RS05085	0.15	-0.4
1,047,695	-		DZA65_RS05085	0.15	-2.0
1,047,695	-		DZA65_RS05085	0.15	-0.5
1,047,695	-		DZA65_RS05085	0.15	+1.5
1,047,695	-		DZA65_RS05085	0.15	+0.6
1,047,775	+		DZA65_RS05085	0.20	+0.5
1,047,776	-		DZA65_RS05085	0.20	-1.1
1,047,776	-		DZA65_RS05085	0.20	+0.0
1,047,803	+		DZA65_RS05085	0.22	+0.5
1,047,803	+				-1.5
1,047,803	+		DZA65_RS05085	0.22	+1.1
1,047,803	+		DZA65_RS05085	0.22	-0.7
1,047,804	-		DZA65_RS05085	0.22	+1.0
1,047,804	-		DZA65_RS05085	0.22	-0.5
1,047,804	-		DZA65_RS05085	0.22	-0.4
1,047,805	+		DZA65_RS05085	0.22	+0.1
1,047,805	+		DZA65_RS05085	0.22	-0.2
1,047,805	+		DZA65_RS05085	0.22	-0.0
1,047,805	+		DZA65_RS05085	0.22	-0.8
1,047,805	+		DZA65_RS05085	0.22	+1.1
1,047,805	+		DZA65_RS05085	0.22	+0.8
1,047,805	+		DZA65_RS05085	0.22	-0.8
1,047,806	-		DZA65_RS05085	0.22	-1.5
1,047,860	+		DZA65_RS05085	0.25	-0.2
1,047,860	+		DZA65_RS05085	0.25	-0.5
1,047,860	+		DZA65_RS05085	0.25	+1.4
1,047,861	-		DZA65_RS05085	0.25	+0.2
1,047,861	-		DZA65_RS05085	0.25	+0.1
1,047,951	+		DZA65_RS05085	0.31	+0.8
1,047,951	+		DZA65_RS05085	0.31	+0.2
1,048,016	+		DZA65_RS05085	0.35	-0.4
1,048,016	+		DZA65_RS05085	0.35	+1.8
1,048,017	-		DZA65_RS05085	0.35	-0.2
1,048,017	-		DZA65_RS05085	0.35	+1.6
1,048,083	+		DZA65_RS05085	0.40	-0.9
1,048,083	+		DZA65_RS05085	0.40	+0.5
1,048,084	-		DZA65_RS05085	0.40	-0.8