Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04945

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,023,375	+		DZA65_RS04935	0.21	+0.2
1,023,454	+		DZA65_RS04935	0.35	+0.6
1,023,462	+		DZA65_RS04935	0.36	+3.2
1,023,463	-		DZA65_RS04935	0.36	+0.4
1,023,463	-		DZA65_RS04935	0.36	+0.1
1,023,471	+		DZA65_RS04935	0.38	+0.7
1,023,472	-		DZA65_RS04935	0.38	+2.7
1,023,572	-		DZA65_RS04935	0.55	-1.0
1,023,606	+		DZA65_RS04935	0.61	-0.7
1,023,616	-		DZA65_RS04935	0.63	-1.2
1,023,616	-		DZA65_RS04935	0.63	-0.2
1,023,638	-		DZA65_RS04935	0.66	-0.2
1,023,638	-		DZA65_RS04935	0.66	+1.1
1,023,663	+		DZA65_RS04935	0.71	-1.8
1,023,663	+		DZA65_RS04935	0.71	-1.2
1,023,663	+		DZA65_RS04935	0.71	+0.3
1,023,663	+		DZA65_RS04935	0.71	+0.6
1,023,664	-		DZA65_RS04935	0.71	+1.4
1,023,664	-		DZA65_RS04935	0.71	+0.2
1,023,664	-		DZA65_RS04935	0.71	-0.4
1,023,664	-		DZA65_RS04935	0.71	-1.8
1,023,664	-		DZA65_RS04935	0.71	-0.0
1,023,664	-		DZA65_RS04935	0.71	+3.9
1,023,708	+		DZA65_RS04935	0.79	-0.4
1,023,784	-				+0.0
1,023,801	+				+0.4
1,023,801	+				+0.5
1,023,801	+				+1.3
1,023,802	-				-0.2
1,023,817	-				-0.4
1,023,822	+				-0.9
1,023,843	+				-0.5
1,023,843	+				+0.4
1,023,844	-				-0.3
1,023,878	-				+0.1
1,023,924	+		DZA65_RS04940	0.18	+0.1
1,023,925	-		DZA65_RS04940	0.18	+0.2
1,023,925	-		DZA65_RS04940	0.18	-0.2
1,023,996	-		DZA65_RS04940	0.33	+0.8
1,024,038	+		DZA65_RS04940	0.42	-0.8
1,024,134	-		DZA65_RS04940	0.61	-0.2
1,024,134	-		DZA65_RS04940	0.61	+0.5
1,024,134	-		DZA65_RS04940	0.61	-1.7
1,024,139	-		DZA65_RS04940	0.63	+1.2
1,024,139	-		DZA65_RS04940	0.63	+0.2
1,024,139	-		DZA65_RS04940	0.63	+0.6
1,024,209	+		DZA65_RS04940	0.77	-0.3
1,024,209	+		DZA65_RS04940	0.77	+3.1
1,024,209	+		DZA65_RS04940	0.77	-1.7
1,024,210	-		DZA65_RS04940	0.77	+0.6
1,024,210	-		DZA65_RS04940	0.77	+0.2
1,024,210	-		DZA65_RS04940	0.77	-0.6
1,024,210	-		DZA65_RS04940	0.77	-1.2
1,024,210	-		DZA65_RS04940	0.77	+0.5
1,024,269	+		DZA65_RS04940	0.89	-0.4
1,024,269	+		DZA65_RS04940	0.89	+1.8
1,024,269	+		DZA65_RS04940	0.89	+1.5
1,024,269	+		DZA65_RS04940	0.89	+0.3
1,024,270	-		DZA65_RS04940	0.90	-1.1
1,024,270	-		DZA65_RS04940	0.90	-1.4
1,024,270	-		DZA65_RS04940	0.90	-1.0
1,024,270	-		DZA65_RS04940	0.90	-0.2
1,024,312	+				+0.1
1,024,312	+				+0.5
1,024,312	+				-0.6
1,024,313	-				+0.3
1,024,313	-				+0.1
1,024,412	+				-0.8
1,024,412	+				+1.8
1,024,412	+				-0.8
1,024,412	+				-0.6
1,024,412	+				+0.1
1,024,412	+				-2.2
1,024,413	-				-0.3
1,024,413	-				+0.1
1,024,469	+		DZA65_RS04945	0.19	-0.8
1,024,479	+		DZA65_RS04945	0.21	+1.1
1,024,479	+		DZA65_RS04945	0.21	+0.8
1,024,479	+		DZA65_RS04945	0.21	-1.1
1,024,479	+		DZA65_RS04945	0.21	-0.8
1,024,479	+		DZA65_RS04945	0.21	-2.0
1,024,480	-		DZA65_RS04945	0.21	-0.0
1,024,491	+		DZA65_RS04945	0.22	+1.1
1,024,491	+		DZA65_RS04945	0.22	-0.4
1,024,570	+		DZA65_RS04945	0.35	+1.2
1,024,570	+		DZA65_RS04945	0.35	+0.2
1,024,570	+		DZA65_RS04945	0.35	+0.5
1,024,570	+		DZA65_RS04945	0.35	-0.2
1,024,571	-		DZA65_RS04945	0.35	+1.3
1,024,571	-		DZA65_RS04945	0.35	+0.1
1,024,571	-		DZA65_RS04945	0.35	-1.0
1,024,615	+		DZA65_RS04945	0.43	+0.1
1,024,716	+		DZA65_RS04945	0.59	-1.0
1,024,740	-		DZA65_RS04945	0.63	+1.3
1,024,740	-		DZA65_RS04945	0.63	-0.5
1,024,946	+				+0.2
1,024,946	+				-0.8
1,024,946	+				-0.6
1,024,947	-				-0.2
1,024,947	-				-0.2
1,024,947	-				+1.5
1,024,947	-				+2.4
1,024,957	-				-1.8
1,025,013	+				-0.9
1,025,014	-				+1.4
1,025,014	-				-0.8
1,025,016	+				-0.9
1,025,016	+				-0.9
1,025,016	+				-0.2
1,025,016	+				+0.6
1,025,016	+				-0.5
1,025,016	+				+0.2
1,025,016	+				-0.5
1,025,017	-				-0.1
1,025,041	-				-0.1
1,025,055	-				-2.0
1,025,070	+				-0.2
1,025,070	+				+0.2
1,025,070	+				+0.2
1,025,070	+				-0.3
1,025,071	-				+0.5
1,025,071	-				-0.1
1,025,071	-				+1.2
1,025,071	-				-1.7
1,025,071	-				+0.4
1,025,071	-				+0.6
1,025,071	-				+0.2
1,025,086	+				+0.3
1,025,086	+				+1.3
1,025,086	+				-0.8
1,025,086	+				+0.6
1,025,087	-				+0.1
1,025,111	+		DZA65_RS04950	0.11	+0.5
1,025,148	-		DZA65_RS04950	0.14	-0.8
1,025,155	+		DZA65_RS04950	0.14	+1.6
1,025,156	-		DZA65_RS04950	0.14	+0.2
1,025,156	-		DZA65_RS04950	0.14	-0.9
1,025,170	+		DZA65_RS04950	0.16	-1.1
1,025,170	+		DZA65_RS04950	0.16	-1.5
1,025,170	+		DZA65_RS04950	0.16	-0.2
1,025,171	-		DZA65_RS04950	0.16	-0.4
1,025,171	-		DZA65_RS04950	0.16	+0.8
1,025,171	-		DZA65_RS04950	0.16	-3.2
1,025,171	-		DZA65_RS04950	0.16	-1.3
1,025,271	+		DZA65_RS04950	0.24	+0.8
1,025,271	+		DZA65_RS04950	0.24	-0.4
1,025,272	-		DZA65_RS04950	0.24	+1.3
1,025,272	-		DZA65_RS04950	0.24	+0.8
1,025,286	+		DZA65_RS04950	0.25	-1.0
1,025,286	+		DZA65_RS04950	0.25	-1.9
1,025,286	+		DZA65_RS04950	0.25	+1.1
1,025,286	+		DZA65_RS04950	0.25	-3.3
1,025,286	+		DZA65_RS04950	0.25	+1.4
1,025,286	+		DZA65_RS04950	0.25	-0.8
1,025,286	+		DZA65_RS04950	0.25	-0.1
1,025,286	+		DZA65_RS04950	0.25	-0.5
1,025,286	+		DZA65_RS04950	0.25	-0.0
1,025,287	-		DZA65_RS04950	0.25	-1.2
1,025,287	-		DZA65_RS04950	0.25	+0.2
1,025,287	-		DZA65_RS04950	0.25	+1.1
1,025,290	+		DZA65_RS04950	0.25	-0.7
1,025,290	+		DZA65_RS04950	0.25	-0.6
1,025,385	-		DZA65_RS04950	0.33	-0.4
1,025,385	-		DZA65_RS04950	0.33	-0.4
1,025,385	-		DZA65_RS04950	0.33	-0.4
1,025,403	+		DZA65_RS04950	0.35	+1.8
1,025,406	+		DZA65_RS04950	0.35	+0.6
1,025,407	-		DZA65_RS04950	0.35	-1.5
1,025,407	-		DZA65_RS04950	0.35	-0.2
1,025,407	-		DZA65_RS04950	0.35	-0.9
1,025,407	-		DZA65_RS04950	0.35	+0.4
1,025,407	-		DZA65_RS04950	0.35	-1.5
1,025,425	+		DZA65_RS04950	0.36	-0.0
1,025,425	+		DZA65_RS04950	0.36	+1.4
1,025,425	+		DZA65_RS04950	0.36	+0.7
1,025,425	+		DZA65_RS04950	0.36	+0.8
1,025,425	+		DZA65_RS04950	0.36	-0.2
1,025,425	+		DZA65_RS04950	0.36	+0.1
1,025,425	+		DZA65_RS04950	0.36	+1.6
1,025,426	-		DZA65_RS04950	0.36	+0.4
1,025,426	-		DZA65_RS04950	0.36	-0.2
1,025,426	-		DZA65_RS04950	0.36	+0.8
1,025,426	-		DZA65_RS04950	0.36	-0.9
1,025,426	-		DZA65_RS04950	0.36	-1.3
1,025,426	-		DZA65_RS04950	0.36	+2.4
1,025,426	-		DZA65_RS04950	0.36	-0.6
1,025,426	-		DZA65_RS04950	0.36	+1.5
1,025,426	-		DZA65_RS04950	0.36	-0.6
1,025,426	-		DZA65_RS04950	0.36	-1.0
1,025,427	+		DZA65_RS04950	0.37	+0.2
1,025,427	+		DZA65_RS04950	0.37	-0.6
1,025,427	+		DZA65_RS04950	0.37	+0.4
1,025,427	+		DZA65_RS04950	0.37	-0.2
1,025,427	+		DZA65_RS04950	0.37	-0.0
1,025,427	+		DZA65_RS04950	0.37	+0.6
1,025,427	+		DZA65_RS04950	0.37	+0.3
1,025,427	+		DZA65_RS04950	0.37	+0.4
1,025,427	+		DZA65_RS04950	0.37	+1.8
1,025,427	+		DZA65_RS04950	0.37	-1.0
1,025,427	+		DZA65_RS04950	0.37	-0.1
1,025,427	+		DZA65_RS04950	0.37	-0.5
1,025,427	+		DZA65_RS04950	0.37	-0.8
1,025,427	+		DZA65_RS04950	0.37	-1.7
1,025,427	+		DZA65_RS04950	0.37	+0.0
1,025,427	+		DZA65_RS04950	0.37	-1.3
1,025,427	+		DZA65_RS04950	0.37	-0.1
1,025,427	+		DZA65_RS04950	0.37	-1.2
1,025,427	+		DZA65_RS04950	0.37	-2.2
1,025,427	+		DZA65_RS04950	0.37	+0.2
1,025,427	+		DZA65_RS04950	0.37	-0.7
1,025,427	+		DZA65_RS04950	0.37	-0.3
1,025,428	-		DZA65_RS04950	0.37	+0.5
1,025,428	-		DZA65_RS04950	0.37	+0.4
1,025,428	-		DZA65_RS04950	0.37	+0.5
1,025,428	-		DZA65_RS04950	0.37	+0.1
1,025,428	-		DZA65_RS04950	0.37	+0.1
1,025,428	-		DZA65_RS04950	0.37	-2.0
1,025,428	-				+0.8
1,025,428	-		DZA65_RS04950	0.37	+0.1
1,025,428	-		DZA65_RS04950	0.37	-1.4
1,025,428	-		DZA65_RS04950	0.37	+0.8
1,025,428	-		DZA65_RS04950	0.37	+0.6
1,025,428	-		DZA65_RS04950	0.37	-0.1
1,025,428	-		DZA65_RS04950	0.37	+0.1
1,025,428	-		DZA65_RS04950	0.37	-0.2
1,025,428	-		DZA65_RS04950	0.37	+0.5
1,025,428	-		DZA65_RS04950	0.37	-1.0
1,025,428	-				+0.8
1,025,428	-		DZA65_RS04950	0.37	-1.8
1,025,428	-		DZA65_RS04950	0.37	-0.5
1,025,428	-				+1.8
1,025,428	-		DZA65_RS04950	0.37	-0.4
1,025,428	-		DZA65_RS04950	0.37	+1.1
1,025,428	-		DZA65_RS04950	0.37	-0.2
1,025,428	-		DZA65_RS04950	0.37	-0.5
1,025,428	-		DZA65_RS04950	0.37	+0.1
1,025,428	-		DZA65_RS04950	0.37	+0.1
1,025,428	-		DZA65_RS04950	0.37	+0.5
1,025,429	+		DZA65_RS04950	0.37	-0.6
1,025,429	+		DZA65_RS04950	0.37	+0.2
1,025,429	+		DZA65_RS04950	0.37	-1.0
1,025,429	+		DZA65_RS04950	0.37	-1.5
1,025,429	+		DZA65_RS04950	0.37	-0.8
1,025,429	+		DZA65_RS04950	0.37	-0.5
1,025,429	+		DZA65_RS04950	0.37	-0.2
1,025,429	+		DZA65_RS04950	0.37	-0.3
1,025,429	+		DZA65_RS04950	0.37	-0.0
1,025,430	-		DZA65_RS04950	0.37	-0.5
1,025,430	-		DZA65_RS04950	0.37	-0.0
1,025,430	-		DZA65_RS04950	0.37	+0.4
1,025,430	-		DZA65_RS04950	0.37	-1.5
1,025,514	+		DZA65_RS04950	0.44	+1.1
1,025,514	+		DZA65_RS04950	0.44	-0.2
1,025,514	+		DZA65_RS04950	0.44	+0.1
1,025,514	+		DZA65_RS04950	0.44	+1.2
1,025,515	-		DZA65_RS04950	0.44	-0.8
1,025,515	-		DZA65_RS04950	0.44	-0.2
1,025,515	-		DZA65_RS04950	0.44	-0.7
1,025,526	-		DZA65_RS04950	0.45	+0.0
1,025,573	+		DZA65_RS04950	0.48	-2.0
1,025,573	+		DZA65_RS04950	0.48	-1.3
1,025,573	+		DZA65_RS04950	0.48	-1.1
1,025,574	-		DZA65_RS04950	0.48	+0.1
1,025,574	-		DZA65_RS04950	0.48	+0.2
1,025,575	+		DZA65_RS04950	0.49	-2.9
1,025,643	+		DZA65_RS04950	0.54	+0.8
1,025,730	+		DZA65_RS04950	0.61	-0.1
1,025,730	+		DZA65_RS04950	0.61	-0.9
1,025,731	-		DZA65_RS04950	0.61	+0.7
1,025,731	-		DZA65_RS04950	0.61	-1.5
1,025,731	-		DZA65_RS04950	0.61	-1.4
1,025,731	-		DZA65_RS04950	0.61	-0.2
1,025,737	-		DZA65_RS04950	0.62	-2.3
1,025,737	-		DZA65_RS04950	0.62	-2.0
1,025,809	+		DZA65_RS04950	0.68	-0.4
1,025,809	+		DZA65_RS04950	0.68	-2.3
1,025,810	-		DZA65_RS04950	0.68	-0.3
1,025,810	-		DZA65_RS04950	0.68	+0.6
1,025,810	-		DZA65_RS04950	0.68	+0.6
1,025,810	-		DZA65_RS04950	0.68	+0.3
1,025,811	+				-1.2
1,025,812	-		DZA65_RS04950	0.68	-0.4
1,025,831	+		DZA65_RS04950	0.69	-0.5
1,025,847	+		DZA65_RS04950	0.71	+0.5
1,025,847	+		DZA65_RS04950	0.71	+0.8
1,025,847	+		DZA65_RS04950	0.71	+0.2
1,025,848	-		DZA65_RS04950	0.71	-1.0
1,025,848	-		DZA65_RS04950	0.71	+0.3
1,025,857	+		DZA65_RS04950	0.71	-0.2
1,025,857	+		DZA65_RS04950	0.71	+0.6
1,025,944	-		DZA65_RS04950	0.79	+0.1