Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04870

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,009,271	+				+0.2
1,009,271	+				-0.2
1,009,271	+				-0.2
1,009,272	-				+2.7
1,009,295	+				-0.5
1,009,295	+				-0.8
1,009,295	+				-0.4
1,009,295	+				-1.4
1,009,296	-				-0.1
1,009,296	-				-1.5
1,009,328	-				+1.1
1,009,328	-				-0.7
1,009,331	+				-1.5
1,009,331	+				+1.8
1,009,331	+				-0.3
1,009,331	+				-0.4
1,009,331	+				+1.1
1,009,332	-				-1.2
1,009,332	-				-0.8
1,009,332	-				-0.6
1,009,340	+				+0.8
1,009,340	+				-0.0
1,009,340	+				+0.2
1,009,353	+				-0.8
1,009,403	+				-0.2
1,009,410	-				-1.2
1,009,449	-				+0.4
1,009,461	+				+0.2
1,009,484	+				-1.1
1,009,570	-				+0.7
1,009,571	+				+0.6
1,009,571	+				-0.4
1,009,572	-				+0.1
1,009,572	-				-0.8
1,009,572	-				+0.8
1,009,607	-				-0.1
1,009,610	+				-1.2
1,009,610	+				+0.5
1,009,610	+				-0.8
1,009,610	+				+1.0
1,009,610	+				+0.6
1,009,610	+				-1.5
1,009,610	+				+0.3
1,009,610	+				-1.1
1,009,611	-				-0.8
1,009,611	-				-0.3
1,009,611	-				+0.8
1,009,611	-				+0.7
1,009,611	-				+0.2
1,009,611	-				-0.8
1,009,711	+				-0.2
1,009,711	+				+0.8
1,009,711	+				+0.1
1,009,711	+				-0.9
1,009,711	+				-0.6
1,009,711	+				+0.2
1,009,711	+				-2.0
1,009,711	+				+0.5
1,009,711	+				+1.0
1,009,711	+				-0.4
1,009,712	-				+0.8
1,009,712	-				-1.7
1,009,712	-				-1.5
1,009,712	-				-0.2
1,009,712	-				-0.2
1,009,712	-				+1.2
1,009,715	+				+0.1
1,009,715	+				-2.0
1,009,716	-				-0.8
1,009,741	+				-0.9
1,009,741	+				+1.4
1,009,742	-				+1.4
1,009,742	-				+0.2
1,009,745	+				-0.3
1,009,757	+				-0.2
1,009,757	+				-0.9
1,009,766	-				-0.1
1,009,766	-				-1.0
1,009,766	-				-0.7
1,009,766	-				+0.1
1,009,798	+				-0.2
1,009,798	+				-0.5
1,009,798	+				-0.2
1,009,798	+				-0.8
1,009,802	+				-1.7
1,009,803	-				-0.7
1,009,826	+				-0.3
1,009,826	+				-0.2
1,009,827	-				-0.6
1,009,827	-				-1.8
1,009,827	-				+0.2
1,009,842	+				+0.6
1,009,953	+				-0.9
1,009,962	+				+0.4
1,009,962	+				-1.0
1,009,988	-				-1.5
1,009,997	+				+0.8
1,010,007	+				+1.5
1,010,041	+				+0.1
1,010,041	+				-0.9
1,010,041	+				-0.1
1,010,041	+				-0.1
1,010,042	-				-1.2
1,010,042	-				+0.6
1,010,042	-				+0.1
1,010,042	-				+1.8
1,010,042	-				+0.9
1,010,042	-				-1.8
1,010,050	-				+0.2
1,010,050	-				-0.4
1,010,050	-				-0.7
1,010,050	-				-0.2
1,010,050	-				+1.4
1,010,050	-				-0.6
1,010,070	-				-0.2
1,010,145	-				+0.8
1,010,203	+				-2.0
1,010,203	+				-0.6
1,010,204	-				+0.4
1,010,234	-		DZA65_RS04870	0.15	-0.0
1,010,326	+		DZA65_RS04870	0.34	+0.2
1,010,326	+		DZA65_RS04870	0.34	+1.6
1,010,326	+		DZA65_RS04870	0.34	-1.5
1,010,326	+		DZA65_RS04870	0.34	+0.4
1,010,326	+		DZA65_RS04870	0.34	-0.5
1,010,326	+		DZA65_RS04870	0.34	+0.8
1,010,326	+		DZA65_RS04870	0.34	-0.1
1,010,326	+		DZA65_RS04870	0.34	-0.3
1,010,326	+		DZA65_RS04870	0.34	+1.9
1,010,327	-		DZA65_RS04870	0.35	-0.2
1,010,327	-		DZA65_RS04870	0.35	-0.2
1,010,327	-		DZA65_RS04870	0.35	-0.4
1,010,327	-		DZA65_RS04870	0.35	+1.6
1,010,327	-		DZA65_RS04870	0.35	-0.1
1,010,327	-		DZA65_RS04870	0.35	+1.3
1,010,327	-		DZA65_RS04870	0.35	-0.8
1,010,328	+		DZA65_RS04870	0.35	-0.9
1,010,328	+		DZA65_RS04870	0.35	-2.0
1,010,329	-		DZA65_RS04870	0.35	+1.1
1,010,329	-		DZA65_RS04870	0.35	-0.9
1,010,329	-		DZA65_RS04870	0.35	+0.5
1,010,330	+		DZA65_RS04870	0.35	-0.8
1,010,330	+		DZA65_RS04870	0.35	+1.5
1,010,330	+		DZA65_RS04870	0.35	+0.6
1,010,330	+		DZA65_RS04870	0.35	+0.4
1,010,330	+		DZA65_RS04870	0.35	-0.2
1,010,330	+		DZA65_RS04870	0.35	+1.8
1,010,330	+		DZA65_RS04870	0.35	-0.3
1,010,330	+		DZA65_RS04870	0.35	+2.0
1,010,331	-		DZA65_RS04870	0.35	-0.2
1,010,331	-		DZA65_RS04870	0.35	+2.4
1,010,331	-		DZA65_RS04870	0.35	+1.2
1,010,331	-		DZA65_RS04870	0.35	-0.0
1,010,331	-		DZA65_RS04870	0.35	-0.6
1,010,331	-		DZA65_RS04870	0.35	+0.2
1,010,349	-		DZA65_RS04870	0.39	+0.8
1,010,415	-		DZA65_RS04870	0.53	+0.0
1,010,415	-		DZA65_RS04870	0.53	-1.4
1,010,529	+		DZA65_RS04870	0.77	+0.8
1,010,554	+		DZA65_RS04870	0.82	+0.8
1,010,554	+		DZA65_RS04870	0.82	+2.6
1,010,554	+		DZA65_RS04870	0.82	-1.0
1,010,555	-				+0.8
1,010,555	-		DZA65_RS04870	0.82	-0.8
1,010,555	-				+0.1
1,010,555	-		DZA65_RS04870	0.82	+1.2
1,010,556	+		DZA65_RS04870	0.82	-0.4
1,010,557	-		DZA65_RS04870	0.82	+1.2
1,010,577	+		DZA65_RS04870	0.87	+0.2
1,010,577	+		DZA65_RS04870	0.87	+1.0
1,010,578	-		DZA65_RS04870	0.87	+1.1
1,010,578	-		DZA65_RS04870	0.87	+1.1
1,010,620	+				-0.9
1,010,620	+				-2.2
1,010,621	-				+0.5
1,010,628	+				+1.4
1,010,628	+				+0.1
1,010,628	+				-1.2
1,010,628	+				+0.6
1,010,629	-				+0.1
1,010,704	+				-0.7
1,010,705	-				-0.6
1,010,705	-				-0.8
1,010,705	-				-0.2
1,010,845	+		DZA65_RS04875	0.55	+0.3
1,010,845	+		DZA65_RS04875	0.55	+0.2
1,010,845	+		DZA65_RS04875	0.55	-0.4
1,010,845	+		DZA65_RS04875	0.55	+0.3
1,010,845	+		DZA65_RS04875	0.55	-0.8
1,010,846	-		DZA65_RS04875	0.55	+1.4
1,010,846	-		DZA65_RS04875	0.55	+0.3
1,010,846	-		DZA65_RS04875	0.55	+0.1
1,010,846	-		DZA65_RS04875	0.55	+0.1
1,010,881	+		DZA65_RS04875	0.71	+1.0
1,010,882	-		DZA65_RS04875	0.71	+0.1
1,010,882	-		DZA65_RS04875	0.71	+1.1
1,010,882	-		DZA65_RS04875	0.71	+0.1
1,010,921	-		DZA65_RS04875	0.88	-0.2
1,010,963	+				-1.2
1,010,963	+				+1.5
1,010,963	+				-1.2
1,010,964	-				+0.8
1,010,964	-				-0.6
1,010,964	-				-0.3
1,010,964	-				-0.0
1,010,977	+				+0.2
1,010,977	+				-0.1
1,010,977	+				-0.5
1,010,977	+				+1.0
1,010,978	-				+0.7
1,010,978	-				-0.4
1,010,978	-				+0.3
1,010,978	-				+0.3
1,010,978	-				-0.8
1,011,010	+				-1.1
1,011,010	+				+2.2
1,011,010	+				+0.4
1,011,011	-				-0.0
1,011,051	+				-0.6
1,011,051	+				-0.0
1,011,052	-				+1.8
1,011,094	+		DZA65_RS04880	0.14	-0.9
1,011,114	+		DZA65_RS04880	0.18	-0.1
1,011,196	+		DZA65_RS04880	0.35	-0.6
1,011,196	+		DZA65_RS04880	0.35	+1.9
1,011,196	+		DZA65_RS04880	0.35	+0.5
1,011,196	+		DZA65_RS04880	0.35	-0.5
1,011,197	-		DZA65_RS04880	0.35	-1.8
1,011,197	-		DZA65_RS04880	0.35	-2.1
1,011,197	-		DZA65_RS04880	0.35	-0.4
1,011,197	-		DZA65_RS04880	0.35	+0.1
1,011,240	+		DZA65_RS04880	0.44	-0.6
1,011,241	-		DZA65_RS04880	0.45	-0.2
1,011,241	-		DZA65_RS04880	0.45	+1.0
1,011,244	+		DZA65_RS04880	0.45	-0.3
1,011,244	+		DZA65_RS04880	0.45	-1.3
1,011,245	-		DZA65_RS04880	0.45	+0.8
1,011,245	-				-0.8
1,011,260	+		DZA65_RS04880	0.48	+1.1
1,011,260	+		DZA65_RS04880	0.48	-0.4
1,011,260	+		DZA65_RS04880	0.48	+0.0
1,011,260	+		DZA65_RS04880	0.48	-0.2
1,011,260	+		DZA65_RS04880	0.48	-0.4
1,011,261	-		DZA65_RS04880	0.49	+0.1
1,011,261	-		DZA65_RS04880	0.49	+0.3
1,011,261	-		DZA65_RS04880	0.49	-1.1
1,011,261	-		DZA65_RS04880	0.49	-0.4
1,011,261	-				+2.4
1,011,261	-		DZA65_RS04880	0.49	-0.5
1,011,261	-		DZA65_RS04880	0.49	+0.2
1,011,262	+		DZA65_RS04880	0.49	-0.0
1,011,262	+		DZA65_RS04880	0.49	-0.6
1,011,301	+		DZA65_RS04880	0.57	-0.0
1,011,353	-		DZA65_RS04880	0.68	+1.1
1,011,353	-		DZA65_RS04880	0.68	-0.6
1,011,565	-				+0.7
1,011,597	+				-0.7
1,011,597	+				-1.1
1,011,597	+				-0.5
1,011,597	+				+0.1
1,011,598	-				-0.6
1,011,610	+				-0.6