Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04785 and DZA65_RS04795 are separated by 866 nucleotides DZA65_RS04795 and DZA65_RS04800 are separated by 140 nucleotides
DZA65_RS04785: DZA65_RS04785 - transcriptional regulator, at 994,076 to 994,297
_RS04785
DZA65_RS04795: DZA65_RS04795 - hypothetical protein, at 995,164 to 995,352
_RS04795
DZA65_RS04800: DZA65_RS04800 - integrase arm-type DNA-binding domain-containing protein, at 995,493 to 996,692
_RS04800
Position (kb) 995
996 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 994.300 kb on + strand at 994.300 kb on + strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.301 kb on - strand at 994.331 kb on + strand at 994.332 kb on - strand at 994.332 kb on - strand at 994.376 kb on + strand at 994.426 kb on - strand at 994.438 kb on + strand at 994.439 kb on - strand at 994.439 kb on - strand at 994.439 kb on - strand at 994.439 kb on - strand at 994.439 kb on - strand at 994.449 kb on - strand at 994.497 kb on - strand at 994.497 kb on - strand at 994.549 kb on + strand at 994.549 kb on + strand at 994.559 kb on + strand at 994.559 kb on + strand at 994.559 kb on + strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.666 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.800 kb on + strand at 994.800 kb on + strand at 994.801 kb on - strand at 994.801 kb on - strand at 994.801 kb on - strand at 995.013 kb on - strand at 995.013 kb on - strand at 995.057 kb on - strand at 995.081 kb on + strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.085 kb on + strand at 995.085 kb on + strand at 995.085 kb on + strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.091 kb on - strand at 995.120 kb on + strand at 995.120 kb on + strand at 995.120 kb on + strand at 995.139 kb on + strand at 995.142 kb on + strand at 995.170 kb on - strand at 995.206 kb on + strand, within DZA65_RS04795 at 995.213 kb on + strand, within DZA65_RS04795 at 995.214 kb on - strand, within DZA65_RS04795 at 995.226 kb on - strand, within DZA65_RS04795 at 995.226 kb on - strand, within DZA65_RS04795 at 995.267 kb on + strand, within DZA65_RS04795 at 995.268 kb on - strand, within DZA65_RS04795 at 995.371 kb on - strand at 995.385 kb on + strand at 995.389 kb on - strand at 995.421 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.648 kb on + strand, within DZA65_RS04800 at 995.655 kb on + strand, within DZA65_RS04800 at 995.656 kb on - strand, within DZA65_RS04800 at 995.698 kb on + strand, within DZA65_RS04800 at 995.699 kb on - strand, within DZA65_RS04800 at 995.699 kb on - strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.757 kb on - strand, within DZA65_RS04800 at 995.757 kb on - strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.928 kb on - strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.038 kb on - strand, within DZA65_RS04800 at 996.038 kb on - strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.230 kb on + strand, within DZA65_RS04800
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 994,300 + +0.8 994,300 + -1.5 994,301 - +0.4 994,301 - -1.2 994,301 - -0.8 994,301 - -0.2 994,301 - -0.4 994,301 - -0.3 994,301 - +0.6 994,331 + -0.2 994,332 - -0.2 994,332 - -0.5 994,376 + +0.5 994,426 - +0.4 994,438 + -2.0 994,439 - +0.5 994,439 - +0.2 994,439 - -2.2 994,439 - -0.5 994,439 - -0.9 994,449 - +0.6 994,497 - -0.9 994,497 - -0.3 994,549 + +0.6 994,549 + +0.3 994,559 + -0.9 994,559 + -0.3 994,559 + +0.8 994,560 - -0.3 994,560 - -0.4 994,560 - +1.3 994,560 - -0.1 994,666 - -0.5 994,766 - +1.2 994,766 - -1.1 994,766 - +0.1 994,800 + +0.5 994,800 + -0.8 994,801 - -0.4 994,801 - +0.9 994,801 - -0.4 995,013 - -0.8 995,013 - -0.2 995,057 - +1.8 995,081 + +0.0 995,082 - +0.3 995,082 - +0.3 995,082 - -1.2 995,082 - +0.4 995,085 + +0.0 995,085 + +1.5 995,085 + +0.8 995,086 - -0.6 995,086 - +0.1 995,086 - -1.1 995,086 - -0.9 995,086 - -0.2 995,091 - +0.4 995,120 + +0.0 995,120 + -2.5 995,120 + -1.1 995,139 + +1.3 995,142 + -1.8 995,170 - -0.4 995,206 + DZA65_RS04795 0.22 -0.5 995,213 + DZA65_RS04795 0.26 +0.3 995,214 - DZA65_RS04795 0.26 -1.2 995,226 - DZA65_RS04795 0.33 -2.2 995,226 - DZA65_RS04795 0.33 +0.1 995,267 + DZA65_RS04795 0.54 -1.0 995,268 - DZA65_RS04795 0.55 +1.5 995,371 - -0.7 995,385 + +0.1 995,389 - +0.3 995,421 - +0.8 995,559 - +0.8 995,559 - -0.4 995,559 - -0.6 995,561 - -0.6 995,561 - -1.0 995,561 - -0.3 995,648 + DZA65_RS04800 0.13 -0.2 995,655 + DZA65_RS04800 0.14 +0.5 995,656 - DZA65_RS04800 0.14 -0.4 995,698 + DZA65_RS04800 0.17 -0.7 995,699 - DZA65_RS04800 0.17 -1.5 995,699 - DZA65_RS04800 0.17 -1.5 995,756 + DZA65_RS04800 0.22 +0.2 995,756 + DZA65_RS04800 0.22 -0.4 995,756 + DZA65_RS04800 0.22 -0.0 995,757 - DZA65_RS04800 0.22 -0.5 995,757 - DZA65_RS04800 0.22 -0.9 995,927 + DZA65_RS04800 0.36 +0.2 995,927 + DZA65_RS04800 0.36 +0.4 995,927 + DZA65_RS04800 0.36 -0.3 995,928 - DZA65_RS04800 0.36 +1.2 995,929 + DZA65_RS04800 0.36 -0.4 995,929 + DZA65_RS04800 0.36 -1.4 995,929 + DZA65_RS04800 0.36 +0.2 995,929 + DZA65_RS04800 0.36 +0.1 995,929 + DZA65_RS04800 0.36 -1.1 995,929 + DZA65_RS04800 0.36 +1.3 995,929 + DZA65_RS04800 0.36 +2.9 995,929 + DZA65_RS04800 0.36 +1.1 995,929 + DZA65_RS04800 0.36 +0.1 995,929 + DZA65_RS04800 0.36 -2.0 995,929 + DZA65_RS04800 0.36 -2.2 995,929 + DZA65_RS04800 0.36 -0.7 995,929 + DZA65_RS04800 0.36 -1.8 995,930 - DZA65_RS04800 0.36 +0.2 995,930 - DZA65_RS04800 0.36 -1.8 995,930 - DZA65_RS04800 0.36 -0.4 995,930 - DZA65_RS04800 0.36 +1.1 995,930 - DZA65_RS04800 0.36 -0.6 996,037 + DZA65_RS04800 0.45 -0.5 996,037 + DZA65_RS04800 0.45 -0.9 996,037 + DZA65_RS04800 0.45 -0.4 996,037 + DZA65_RS04800 0.45 -1.2 996,037 + DZA65_RS04800 0.45 +1.1 996,037 + DZA65_RS04800 0.45 -0.6 996,037 + DZA65_RS04800 0.45 -0.4 996,037 + DZA65_RS04800 0.45 -1.1 996,038 - DZA65_RS04800 0.45 +0.5 996,038 - DZA65_RS04800 0.45 +0.6 996,145 + DZA65_RS04800 0.54 +1.2 996,145 + DZA65_RS04800 0.54 +0.8 996,145 + DZA65_RS04800 0.54 +0.6 996,145 + DZA65_RS04800 0.54 +1.8 996,230 + DZA65_RS04800 0.61 -1.5
Or see this region's nucleotide sequence