Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04295

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04290 and DZA65_RS04295 are separated by 113 nucleotidesDZA65_RS04295 and DZA65_RS04300 are separated by 354 nucleotides DZA65_RS04290: DZA65_RS04290 - N-glycosyltransferase, at 895,155 to 896,429 _RS04290 DZA65_RS04295: DZA65_RS04295 - transcriptional regulator, at 896,543 to 896,830 _RS04295 DZA65_RS04300: DZA65_RS04300 - LuxR family transcriptional regulator, at 897,185 to 897,874 _RS04300 Position (kb) 896 897Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 895.821 kb on + strand, within DZA65_RS04290at 895.822 kb on - strand, within DZA65_RS04290at 896.102 kb on + strand, within DZA65_RS04290at 896.102 kb on + strand, within DZA65_RS04290at 896.144 kb on + strand, within DZA65_RS04290at 896.340 kb on + strandat 896.342 kb on + strandat 896.342 kb on + strandat 896.342 kb on + strandat 896.343 kb on - strandat 896.343 kb on - strandat 896.362 kb on + strandat 896.363 kb on - strandat 896.363 kb on - strandat 896.438 kb on - strandat 896.448 kb on + strandat 896.511 kb on + strandat 896.511 kb on + strandat 896.512 kb on - strandat 896.512 kb on - strandat 896.541 kb on - strandat 896.552 kb on + strandat 896.552 kb on + strandat 896.552 kb on + strandat 896.575 kb on + strand, within DZA65_RS04295at 896.575 kb on + strand, within DZA65_RS04295at 896.622 kb on + strand, within DZA65_RS04295at 896.622 kb on + strand, within DZA65_RS04295at 896.661 kb on - strand, within DZA65_RS04295at 896.703 kb on + strand, within DZA65_RS04295at 896.705 kb on + strand, within DZA65_RS04295at 896.705 kb on + strand, within DZA65_RS04295at 896.706 kb on - strand, within DZA65_RS04295at 896.835 kb on + strandat 896.855 kb on - strandat 896.879 kb on + strandat 896.906 kb on - strandat 896.917 kb on - strandat 896.945 kb on + strandat 896.946 kb on - strandat 896.946 kb on - strandat 896.946 kb on - strandat 896.984 kb on + strandat 896.984 kb on + strandat 896.985 kb on - strandat 896.985 kb on - strandat 896.985 kb on - strandat 896.985 kb on - strandat 896.987 kb on - strandat 897.006 kb on - strandat 897.076 kb on + strandat 897.108 kb on - strandat 897.175 kb on + strandat 897.216 kb on - strandat 897.220 kb on - strandat 897.229 kb on + strandat 897.293 kb on + strand, within DZA65_RS04300at 897.293 kb on + strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.294 kb on - strand, within DZA65_RS04300at 897.295 kb on + strand, within DZA65_RS04300at 897.296 kb on - strandat 897.312 kb on - strand, within DZA65_RS04300at 897.312 kb on - strand, within DZA65_RS04300at 897.312 kb on - strand, within DZA65_RS04300at 897.317 kb on + strand, within DZA65_RS04300at 897.318 kb on - strand, within DZA65_RS04300at 897.326 kb on - strand, within DZA65_RS04300at 897.592 kb on + strand, within DZA65_RS04300at 897.593 kb on - strand, within DZA65_RS04300at 897.605 kb on - strand, within DZA65_RS04300at 897.605 kb on - strand, within DZA65_RS04300at 897.630 kb on + strand, within DZA65_RS04300at 897.630 kb on + strand, within DZA65_RS04300at 897.630 kb on + strand, within DZA65_RS04300at 897.630 kb on + strand, within DZA65_RS04300at 897.631 kb on - strand, within DZA65_RS04300at 897.631 kb on - strand, within DZA65_RS04300at 897.631 kb on - strand, within DZA65_RS04300at 897.631 kb on - strand, within DZA65_RS04300at 897.750 kb on + strand, within DZA65_RS04300at 897.750 kb on + strandat 897.750 kb on + strand, within DZA65_RS04300at 897.750 kb on + strand, within DZA65_RS04300at 897.751 kb on - strand, within DZA65_RS04300at 897.751 kb on - strand, within DZA65_RS04300at 897.751 kb on - strand, within DZA65_RS04300at 897.751 kb on - strand, within DZA65_RS04300at 897.751 kb on - strand, within DZA65_RS04300at 897.761 kb on + strand, within DZA65_RS04300at 897.761 kb on + strand, within DZA65_RS04300at 897.761 kb on + strand, within DZA65_RS04300at 897.761 kb on + strand, within DZA65_RS04300at 897.761 kb on + strand, within DZA65_RS04300at 897.762 kb on - strand, within DZA65_RS04300at 897.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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895,821 + DZA65_RS04290 0.52 +1.0
895,822 - DZA65_RS04290 0.52 -1.8
896,102 + DZA65_RS04290 0.74 -1.8
896,102 + DZA65_RS04290 0.74 +0.6
896,144 + DZA65_RS04290 0.78 +0.1
896,340 + +0.8
896,342 + +1.4
896,342 + +0.8
896,342 + -1.5
896,343 - -2.2
896,343 - -0.2
896,362 + -0.4
896,363 - +1.5
896,363 - +1.4
896,438 - -0.8
896,448 + -0.2
896,511 + +0.2
896,511 + -0.2
896,512 - +0.7
896,512 - +0.4
896,541 - -1.2
896,552 + +0.8
896,552 + +0.1
896,552 + +0.8
896,575 + DZA65_RS04295 0.11 +0.1
896,575 + DZA65_RS04295 0.11 -1.5
896,622 + DZA65_RS04295 0.27 -0.0
896,622 + DZA65_RS04295 0.27 -1.4
896,661 - DZA65_RS04295 0.41 +0.2
896,703 + DZA65_RS04295 0.56 -0.2
896,705 + DZA65_RS04295 0.56 -3.3
896,705 + DZA65_RS04295 0.56 -1.4
896,706 - DZA65_RS04295 0.57 -0.6
896,835 + +0.4
896,855 - -0.6
896,879 + +0.5
896,906 - -0.9
896,917 - -0.2
896,945 + -0.9
896,946 - +2.0
896,946 - +3.7
896,946 - -0.4
896,984 + -0.8
896,984 + +1.2
896,985 - +0.4
896,985 - +1.2
896,985 - +2.3
896,985 - +1.1
896,987 - +0.2
897,006 - +0.2
897,076 + -0.7
897,108 - +1.2
897,175 + +0.8
897,216 - -0.2
897,220 - -2.1
897,229 + -0.3
897,293 + DZA65_RS04300 0.16 -0.0
897,293 + DZA65_RS04300 0.16 -2.2
897,294 - DZA65_RS04300 0.16 -2.9
897,294 - DZA65_RS04300 0.16 -0.8
897,294 - DZA65_RS04300 0.16 +0.8
897,294 - DZA65_RS04300 0.16 +1.1
897,294 - DZA65_RS04300 0.16 +0.4
897,294 - DZA65_RS04300 0.16 -1.4
897,294 - DZA65_RS04300 0.16 -1.5
897,294 - DZA65_RS04300 0.16 -0.3
897,294 - DZA65_RS04300 0.16 -0.2
897,295 + DZA65_RS04300 0.16 +0.2
897,296 - +1.8
897,312 - DZA65_RS04300 0.18 -1.3
897,312 - DZA65_RS04300 0.18 +0.1
897,312 - DZA65_RS04300 0.18 -0.4
897,317 + DZA65_RS04300 0.19 +0.2
897,318 - DZA65_RS04300 0.19 +0.7
897,326 - DZA65_RS04300 0.20 -0.8
897,592 + DZA65_RS04300 0.59 -0.6
897,593 - DZA65_RS04300 0.59 -0.2
897,605 - DZA65_RS04300 0.61 +0.8
897,605 - DZA65_RS04300 0.61 -0.2
897,630 + DZA65_RS04300 0.64 -0.5
897,630 + DZA65_RS04300 0.64 +0.3
897,630 + DZA65_RS04300 0.64 -0.8
897,630 + DZA65_RS04300 0.64 +0.2
897,631 - DZA65_RS04300 0.65 -0.8
897,631 - DZA65_RS04300 0.65 +1.9
897,631 - DZA65_RS04300 0.65 +0.2
897,631 - DZA65_RS04300 0.65 -0.7
897,750 + DZA65_RS04300 0.82 +0.2
897,750 + +0.8
897,750 + DZA65_RS04300 0.82 +0.2
897,750 + DZA65_RS04300 0.82 -0.3
897,751 - DZA65_RS04300 0.82 -0.4
897,751 - DZA65_RS04300 0.82 -0.2
897,751 - DZA65_RS04300 0.82 +0.4
897,751 - DZA65_RS04300 0.82 +1.6
897,751 - DZA65_RS04300 0.82 +0.6
897,761 + DZA65_RS04300 0.83 -0.6
897,761 + DZA65_RS04300 0.83 +1.8
897,761 + DZA65_RS04300 0.83 +1.1
897,761 + DZA65_RS04300 0.83 -1.2
897,761 + DZA65_RS04300 0.83 +0.6
897,762 - DZA65_RS04300 0.84 -0.2
897,810 - +0.8

Or see this region's nucleotide sequence