Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03060 and DZA65_RS03065 are separated by 478 nucleotides DZA65_RS03065 and DZA65_RS03080 are separated by 888 nucleotides
DZA65_RS03060: DZA65_RS03060 - TetR/AcrR family transcriptional regulator, at 654,974 to 655,555
_RS03060
DZA65_RS03065: DZA65_RS03065 - SDR family oxidoreductase, at 656,034 to 656,897
_RS03065
DZA65_RS03080: DZA65_RS03080 - site-specific integrase, at 657,786 to 658,238
_RS03080
Position (kb) 656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 655.160 kb on + strand, within DZA65_RS03060 at 655.160 kb on + strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.173 kb on + strand, within DZA65_RS03060 at 655.173 kb on + strand, within DZA65_RS03060 at 655.174 kb on - strand, within DZA65_RS03060 at 655.174 kb on - strand, within DZA65_RS03060 at 655.184 kb on + strand, within DZA65_RS03060 at 655.185 kb on - strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.278 kb on + strand, within DZA65_RS03060 at 655.278 kb on + strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.309 kb on + strand, within DZA65_RS03060 at 655.310 kb on - strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.507 kb on + strand at 655.507 kb on + strand at 655.507 kb on + strand at 655.545 kb on - strand at 655.545 kb on - strand at 655.545 kb on - strand at 655.571 kb on - strand at 655.606 kb on + strand at 655.619 kb on + strand at 655.620 kb on - strand at 655.651 kb on + strand at 655.684 kb on - strand at 655.741 kb on + strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.889 kb on + strand at 655.893 kb on + strand at 655.894 kb on - strand at 655.894 kb on - strand at 655.964 kb on + strand at 655.965 kb on - strand at 655.992 kb on + strand at 655.992 kb on + strand at 655.992 kb on + strand at 655.993 kb on - strand at 655.993 kb on - strand at 655.993 kb on - strand at 655.993 kb on - strand at 656.020 kb on + strand at 656.020 kb on + strand at 656.020 kb on + strand at 656.021 kb on - strand at 656.021 kb on - strand at 656.039 kb on + strand at 656.092 kb on - strand at 656.092 kb on - strand at 656.092 kb on - strand at 656.148 kb on - strand, within DZA65_RS03065 at 656.148 kb on - strand, within DZA65_RS03065 at 656.187 kb on + strand, within DZA65_RS03065 at 656.187 kb on + strand, within DZA65_RS03065 at 656.222 kb on + strand, within DZA65_RS03065 at 656.223 kb on - strand, within DZA65_RS03065 at 656.223 kb on - strand, within DZA65_RS03065 at 656.309 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.444 kb on + strand, within DZA65_RS03065 at 656.562 kb on + strand, within DZA65_RS03065 at 656.562 kb on + strand, within DZA65_RS03065 at 656.562 kb on + strand, within DZA65_RS03065 at 656.562 kb on + strand, within DZA65_RS03065 at 656.562 kb on + strand, within DZA65_RS03065 at 656.563 kb on - strand, within DZA65_RS03065 at 656.563 kb on - strand, within DZA65_RS03065 at 656.563 kb on - strand, within DZA65_RS03065 at 656.563 kb on - strand, within DZA65_RS03065 at 656.563 kb on - strand, within DZA65_RS03065 at 656.563 kb on - strand, within DZA65_RS03065 at 656.630 kb on + strand, within DZA65_RS03065 at 656.630 kb on + strand, within DZA65_RS03065 at 656.630 kb on + strand, within DZA65_RS03065 at 656.630 kb on + strand, within DZA65_RS03065 at 656.631 kb on - strand, within DZA65_RS03065 at 656.631 kb on - strand, within DZA65_RS03065 at 656.704 kb on + strand, within DZA65_RS03065 at 656.745 kb on + strand, within DZA65_RS03065 at 656.745 kb on + strand, within DZA65_RS03065 at 656.745 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.765 kb on + strand, within DZA65_RS03065 at 656.766 kb on - strand, within DZA65_RS03065 at 656.766 kb on - strand, within DZA65_RS03065 at 656.766 kb on - strand, within DZA65_RS03065 at 656.766 kb on - strand, within DZA65_RS03065 at 656.766 kb on - strand, within DZA65_RS03065 at 656.766 kb on - strand, within DZA65_RS03065 at 656.766 kb on - strand, within DZA65_RS03065 at 656.766 kb on - strand, within DZA65_RS03065 at 656.793 kb on - strand, within DZA65_RS03065 at 656.857 kb on + strand at 656.857 kb on + strand at 656.858 kb on - strand at 656.862 kb on - strand at 656.895 kb on + strand at 656.895 kb on + strand at 656.896 kb on - strand at 656.896 kb on - strand at 656.896 kb on - strand at 656.912 kb on + strand at 656.912 kb on + strand at 656.912 kb on + strand at 656.912 kb on + strand at 656.912 kb on + strand at 656.913 kb on - strand at 656.913 kb on - strand at 656.913 kb on - strand at 656.915 kb on + strand at 656.915 kb on + strand at 656.915 kb on + strand at 656.915 kb on + strand at 656.916 kb on - strand at 656.916 kb on - strand at 656.935 kb on + strand at 656.935 kb on + strand at 656.935 kb on + strand at 656.936 kb on - strand at 656.944 kb on + strand at 656.944 kb on + strand at 656.948 kb on + strand at 656.948 kb on + strand at 656.948 kb on + strand at 656.948 kb on + strand at 656.949 kb on - strand at 656.949 kb on - strand at 656.949 kb on - strand at 656.949 kb on - strand at 656.949 kb on - strand at 656.962 kb on - strand at 656.962 kb on - strand at 656.962 kb on - strand at 656.980 kb on - strand at 657.040 kb on + strand at 657.041 kb on - strand at 657.045 kb on + strand at 657.045 kb on + strand at 657.045 kb on + strand at 657.046 kb on - strand at 657.046 kb on - strand at 657.046 kb on - strand at 657.046 kb on - strand at 657.055 kb on + strand at 657.056 kb on - strand at 657.056 kb on - strand at 657.056 kb on - strand at 657.056 kb on - strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.060 kb on - strand at 657.060 kb on - strand at 657.076 kb on + strand at 657.076 kb on + strand at 657.076 kb on + strand at 657.076 kb on + strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.097 kb on + strand at 657.098 kb on - strand at 657.112 kb on + strand at 657.112 kb on + strand at 657.112 kb on + strand at 657.112 kb on + strand at 657.113 kb on - strand at 657.113 kb on - strand at 657.113 kb on - strand at 657.181 kb on + strand at 657.181 kb on + strand at 657.181 kb on + strand at 657.218 kb on + strand at 657.218 kb on + strand at 657.218 kb on + strand at 657.219 kb on - strand at 657.219 kb on - strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.228 kb on - strand at 657.228 kb on - strand at 657.228 kb on - strand at 657.228 kb on - strand at 657.228 kb on - strand at 657.230 kb on + strand at 657.230 kb on + strand at 657.230 kb on + strand at 657.230 kb on + strand at 657.230 kb on + strand at 657.231 kb on - strand at 657.231 kb on - strand at 657.231 kb on - strand at 657.231 kb on - strand at 657.289 kb on - strand at 657.293 kb on + strand at 657.297 kb on - strand at 657.297 kb on - strand at 657.297 kb on - strand at 657.302 kb on - strand at 657.302 kb on - strand at 657.325 kb on - strand at 657.325 kb on - strand at 657.325 kb on - strand at 657.328 kb on + strand at 657.328 kb on + strand at 657.329 kb on - strand at 657.329 kb on - strand at 657.423 kb on + strand at 657.449 kb on + strand at 657.449 kb on + strand at 657.460 kb on + strand at 657.461 kb on - strand at 657.503 kb on + strand at 657.504 kb on - strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.552 kb on + strand at 657.553 kb on - strand at 657.553 kb on - strand at 657.553 kb on - strand at 657.553 kb on - strand at 657.558 kb on + strand at 657.558 kb on + strand at 657.558 kb on + strand at 657.559 kb on - strand at 657.570 kb on + strand at 657.571 kb on - strand at 657.582 kb on + strand at 657.582 kb on + strand at 657.583 kb on - strand at 657.583 kb on - strand at 657.594 kb on + strand at 657.595 kb on - strand at 657.631 kb on + strand at 657.645 kb on + strand at 657.646 kb on - strand at 657.661 kb on - strand at 657.678 kb on + strand at 657.678 kb on + strand at 657.679 kb on - strand at 657.679 kb on - strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.702 kb on + strand at 657.702 kb on + strand at 657.703 kb on - strand at 657.703 kb on - strand at 657.709 kb on + strand at 657.709 kb on + strand at 657.709 kb on + strand at 657.709 kb on + strand at 657.709 kb on + strand at 657.710 kb on - strand at 657.710 kb on - strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.802 kb on + strand at 657.859 kb on + strand, within DZA65_RS03080 at 657.859 kb on + strand, within DZA65_RS03080 at 657.859 kb on + strand, within DZA65_RS03080 at 657.860 kb on - strand, within DZA65_RS03080 at 657.881 kb on + strand, within DZA65_RS03080 at 657.881 kb on + strand, within DZA65_RS03080 at 657.890 kb on + strand, within DZA65_RS03080 at 657.890 kb on + strand, within DZA65_RS03080 at 657.890 kb on + strand, within DZA65_RS03080 at 657.890 kb on + strand, within DZA65_RS03080 at 657.891 kb on - strand, within DZA65_RS03080 at 657.891 kb on - strand, within DZA65_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 655,160 + DZA65_RS03060 0.32 +0.1 655,160 + DZA65_RS03060 0.32 +0.2 655,161 - DZA65_RS03060 0.32 -1.0 655,161 - DZA65_RS03060 0.32 +0.0 655,161 - DZA65_RS03060 0.32 +1.3 655,161 - DZA65_RS03060 0.32 -0.6 655,173 + DZA65_RS03060 0.34 -1.4 655,173 + DZA65_RS03060 0.34 -0.8 655,174 - DZA65_RS03060 0.34 -1.6 655,174 - DZA65_RS03060 0.34 +0.4 655,184 + DZA65_RS03060 0.36 -1.2 655,185 - DZA65_RS03060 0.36 -0.0 655,211 + DZA65_RS03060 0.41 +2.1 655,211 + DZA65_RS03060 0.41 +1.3 655,211 + DZA65_RS03060 0.41 +4.3 655,211 + DZA65_RS03060 0.41 -0.5 655,211 + DZA65_RS03060 0.41 -1.6 655,211 + DZA65_RS03060 0.41 -0.2 655,212 - DZA65_RS03060 0.41 +0.3 655,212 - DZA65_RS03060 0.41 -1.0 655,212 - DZA65_RS03060 0.41 +0.6 655,278 + DZA65_RS03060 0.52 -0.6 655,278 + DZA65_RS03060 0.52 -0.2 655,279 - DZA65_RS03060 0.52 +0.2 655,279 - DZA65_RS03060 0.52 -1.8 655,279 - DZA65_RS03060 0.52 -0.9 655,309 + DZA65_RS03060 0.58 -0.2 655,310 - DZA65_RS03060 0.58 -0.3 655,410 + DZA65_RS03060 0.75 +0.4 655,410 + DZA65_RS03060 0.75 +0.6 655,410 + DZA65_RS03060 0.75 -1.7 655,507 + -0.0 655,507 + -0.6 655,507 + +1.0 655,545 - -0.3 655,545 - -0.6 655,545 - +1.3 655,571 - +0.2 655,606 + -0.0 655,619 + +0.4 655,620 - -0.3 655,651 + -0.0 655,684 - +1.0 655,741 + -0.6 655,742 - -0.8 655,742 - +1.0 655,742 - +0.5 655,742 - +2.5 655,742 - +0.1 655,742 - +0.3 655,743 + -0.2 655,743 + -0.5 655,743 + +0.2 655,743 + -0.4 655,743 + -0.5 655,743 + -0.6 655,743 + -1.0 655,743 + +1.0 655,743 + +1.2 655,743 + -0.5 655,743 + +3.9 655,743 + +0.5 655,743 + +1.4 655,744 - -0.3 655,744 - +0.5 655,744 - +0.2 655,744 - +0.3 655,744 - -0.8 655,744 - +0.2 655,744 - -0.2 655,744 - +1.4 655,744 - +0.5 655,744 - +0.7 655,744 - -0.5 655,744 - +0.1 655,744 - -0.4 655,744 - -0.6 655,744 - +2.0 655,889 + -0.6 655,893 + +0.6 655,894 - -0.2 655,894 - -1.4 655,964 + -0.7 655,965 - +0.2 655,992 + -2.0 655,992 + -0.4 655,992 + +1.0 655,993 - +2.4 655,993 - +0.2 655,993 - -0.5 655,993 - +0.1 656,020 + +0.1 656,020 + +1.0 656,020 + +1.0 656,021 - -0.0 656,021 - -1.8 656,039 + -0.2 656,092 - +1.3 656,092 - +0.5 656,092 - +0.1 656,148 - DZA65_RS03065 0.13 +1.1 656,148 - DZA65_RS03065 0.13 +1.1 656,187 + DZA65_RS03065 0.18 -2.1 656,187 + DZA65_RS03065 0.18 +1.2 656,222 + DZA65_RS03065 0.22 +0.6 656,223 - DZA65_RS03065 0.22 -0.7 656,223 - DZA65_RS03065 0.22 -0.3 656,309 + DZA65_RS03065 0.32 +0.3 656,383 + DZA65_RS03065 0.40 -0.6 656,383 + DZA65_RS03065 0.40 -1.1 656,383 + DZA65_RS03065 0.40 +2.1 656,384 - DZA65_RS03065 0.41 -1.0 656,384 - DZA65_RS03065 0.41 -0.3 656,384 - DZA65_RS03065 0.41 +0.6 656,444 + DZA65_RS03065 0.47 -0.2 656,562 + DZA65_RS03065 0.61 -0.6 656,562 + DZA65_RS03065 0.61 -0.5 656,562 + DZA65_RS03065 0.61 -0.3 656,562 + DZA65_RS03065 0.61 +1.8 656,562 + DZA65_RS03065 0.61 -1.3 656,563 - DZA65_RS03065 0.61 +0.7 656,563 - DZA65_RS03065 0.61 +0.4 656,563 - DZA65_RS03065 0.61 -1.5 656,563 - DZA65_RS03065 0.61 -0.1 656,563 - DZA65_RS03065 0.61 -0.0 656,563 - DZA65_RS03065 0.61 +1.6 656,630 + DZA65_RS03065 0.69 +0.7 656,630 + DZA65_RS03065 0.69 -0.4 656,630 + DZA65_RS03065 0.69 -0.3 656,630 + DZA65_RS03065 0.69 +2.0 656,631 - DZA65_RS03065 0.69 +2.0 656,631 - DZA65_RS03065 0.69 -0.5 656,704 + DZA65_RS03065 0.78 +1.5 656,745 + DZA65_RS03065 0.82 -0.4 656,745 + DZA65_RS03065 0.82 -0.6 656,745 + DZA65_RS03065 0.82 -0.2 656,765 + DZA65_RS03065 0.85 +1.7 656,765 + DZA65_RS03065 0.85 +0.2 656,765 + DZA65_RS03065 0.85 -0.4 656,765 + DZA65_RS03065 0.85 +0.1 656,765 + DZA65_RS03065 0.85 -2.0 656,765 + DZA65_RS03065 0.85 +0.8 656,765 + DZA65_RS03065 0.85 +0.7 656,765 + DZA65_RS03065 0.85 -0.5 656,765 + DZA65_RS03065 0.85 +0.7 656,766 - DZA65_RS03065 0.85 +1.9 656,766 - DZA65_RS03065 0.85 +0.1 656,766 - DZA65_RS03065 0.85 -0.5 656,766 - DZA65_RS03065 0.85 -0.2 656,766 - DZA65_RS03065 0.85 -0.5 656,766 - DZA65_RS03065 0.85 +2.8 656,766 - DZA65_RS03065 0.85 +0.5 656,766 - DZA65_RS03065 0.85 +0.2 656,793 - DZA65_RS03065 0.88 +1.3 656,857 + -0.5 656,857 + -0.7 656,858 - -0.0 656,862 - +1.0 656,895 + -0.0 656,895 + -1.2 656,896 - -1.2 656,896 - -0.8 656,896 - -1.4 656,912 + -1.1 656,912 + +1.0 656,912 + +1.6 656,912 + +1.0 656,912 + +1.0 656,913 - -0.4 656,913 - -0.4 656,913 - -0.4 656,915 + -0.5 656,915 + +0.6 656,915 + -0.6 656,915 + +1.0 656,916 - -0.5 656,916 - +1.4 656,935 + +0.2 656,935 + -0.6 656,935 + -0.7 656,936 - -1.2 656,944 + -0.0 656,944 + -1.8 656,948 + +1.0 656,948 + -1.0 656,948 + -0.7 656,948 + +1.5 656,949 - -0.6 656,949 - -0.6 656,949 - +0.6 656,949 - +1.0 656,949 - -0.0 656,962 - +0.5 656,962 - +0.0 656,962 - -1.3 656,980 - +0.7 657,040 + -0.6 657,041 - -0.3 657,045 + -1.0 657,045 + -0.0 657,045 + +0.2 657,046 - +0.4 657,046 - +0.7 657,046 - -0.3 657,046 - -0.2 657,055 + -1.2 657,056 - -0.2 657,056 - +0.1 657,056 - -0.4 657,056 - -0.4 657,059 + +0.1 657,059 + +0.1 657,059 + +0.4 657,059 + +0.8 657,059 + -1.4 657,059 + +1.4 657,059 + -0.4 657,060 - -1.4 657,060 - +1.2 657,076 + -0.6 657,076 + -0.0 657,076 + +0.4 657,076 + +0.2 657,077 - +1.1 657,077 - +3.3 657,077 - +1.0 657,077 - -0.8 657,077 - -0.4 657,077 - +0.1 657,077 - -1.6 657,077 - +0.2 657,077 - -0.0 657,077 - +0.4 657,077 - -0.4 657,097 + -0.2 657,098 - -0.0 657,112 + -0.8 657,112 + +1.1 657,112 + +1.0 657,112 + +0.7 657,113 - 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+1.0 657,713 - -0.4 657,802 + +1.0 657,859 + DZA65_RS03080 0.16 -0.9 657,859 + DZA65_RS03080 0.16 +1.5 657,859 + DZA65_RS03080 0.16 -1.6 657,860 - DZA65_RS03080 0.16 -0.9 657,881 + DZA65_RS03080 0.21 -0.6 657,881 + DZA65_RS03080 0.21 -0.0 657,890 + DZA65_RS03080 0.23 -0.9 657,890 + DZA65_RS03080 0.23 +2.3 657,890 + DZA65_RS03080 0.23 -0.6 657,890 + DZA65_RS03080 0.23 +1.0 657,891 - DZA65_RS03080 0.23 +0.2 657,891 - DZA65_RS03080 0.23 -0.3
Or see this region's nucleotide sequence