Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02225 and DZA65_RS02230 are separated by 150 nucleotides DZA65_RS02230 and DZA65_RS02235 are separated by 145 nucleotides DZA65_RS02235 and DZA65_RS02240 are separated by 75 nucleotides
DZA65_RS02225: DZA65_RS02225 - hypothetical protein, at 483,168 to 484,481
_RS02225
DZA65_RS02230: DZA65_RS02230 - MFS transporter, at 484,632 to 486,026
_RS02230
DZA65_RS02235: DZA65_RS02235 - HNH endonuclease, at 486,172 to 486,549
_RS02235
DZA65_RS02240: DZA65_RS02240 - DeoR/GlpR transcriptional regulator, at 486,625 to 487,416
_RS02240
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 483.659 kb on + strand, within DZA65_RS02225 at 483.681 kb on + strand, within DZA65_RS02225 at 483.687 kb on + strand, within DZA65_RS02225 at 483.733 kb on + strand, within DZA65_RS02225 at 483.828 kb on - strand, within DZA65_RS02225 at 483.863 kb on + strand, within DZA65_RS02225 at 483.912 kb on - strand, within DZA65_RS02225 at 484.030 kb on + strand, within DZA65_RS02225 at 484.031 kb on - strand, within DZA65_RS02225 at 484.034 kb on + strand, within DZA65_RS02225 at 484.035 kb on - strand, within DZA65_RS02225 at 484.035 kb on - strand, within DZA65_RS02225 at 484.067 kb on + strand, within DZA65_RS02225 at 484.068 kb on - strand, within DZA65_RS02225 at 484.280 kb on - strand at 484.313 kb on + strand, within DZA65_RS02225 at 484.341 kb on + strand, within DZA65_RS02225 at 484.341 kb on + strand, within DZA65_RS02225 at 484.344 kb on + strand, within DZA65_RS02225 at 484.370 kb on + strand at 484.460 kb on - strand at 484.472 kb on + strand at 484.479 kb on + strand at 484.479 kb on + strand at 484.480 kb on - strand at 484.557 kb on + strand at 484.558 kb on - strand at 484.626 kb on - strand at 484.814 kb on + strand, within DZA65_RS02230 at 484.814 kb on + strand, within DZA65_RS02230 at 484.815 kb on - strand, within DZA65_RS02230 at 484.815 kb on - strand, within DZA65_RS02230 at 484.815 kb on - strand, within DZA65_RS02230 at 484.905 kb on + strand, within DZA65_RS02230 at 484.905 kb on + strand, within DZA65_RS02230 at 484.905 kb on + strand, within DZA65_RS02230 at 484.906 kb on - strand, within DZA65_RS02230 at 484.906 kb on - strand, within DZA65_RS02230 at 484.906 kb on - strand, within DZA65_RS02230 at 484.906 kb on - strand, within DZA65_RS02230 at 484.928 kb on + strand, within DZA65_RS02230 at 484.928 kb on + strand, within DZA65_RS02230 at 484.929 kb on - strand, within DZA65_RS02230 at 484.929 kb on - strand, within DZA65_RS02230 at 484.929 kb on - strand, within DZA65_RS02230 at 485.063 kb on + strand, within DZA65_RS02230 at 485.063 kb on + strand, within DZA65_RS02230 at 485.064 kb on - strand, within DZA65_RS02230 at 485.064 kb on - strand, within DZA65_RS02230 at 485.064 kb on - strand, within DZA65_RS02230 at 485.064 kb on - strand, within DZA65_RS02230 at 485.064 kb on - strand, within DZA65_RS02230 at 485.064 kb on - strand at 485.064 kb on - strand, within DZA65_RS02230 at 485.234 kb on + strand, within DZA65_RS02230 at 485.392 kb on - strand, within DZA65_RS02230 at 485.450 kb on + strand, within DZA65_RS02230 at 485.450 kb on + strand, within DZA65_RS02230 at 485.451 kb on - strand, within DZA65_RS02230 at 485.459 kb on - strand, within DZA65_RS02230 at 485.532 kb on + strand, within DZA65_RS02230 at 485.532 kb on + strand, within DZA65_RS02230 at 485.532 kb on + strand, within DZA65_RS02230 at 485.533 kb on - strand, within DZA65_RS02230 at 485.533 kb on - strand, within DZA65_RS02230 at 485.533 kb on - strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.657 kb on - strand, within DZA65_RS02230 at 485.657 kb on - strand at 485.657 kb on - strand, within DZA65_RS02230 at 485.657 kb on - strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.666 kb on + strand, within DZA65_RS02230 at 485.731 kb on - strand, within DZA65_RS02230 at 485.849 kb on + strand, within DZA65_RS02230 at 486.052 kb on + strand at 486.053 kb on - strand at 486.053 kb on - strand at 486.094 kb on - strand at 486.094 kb on - strand at 486.094 kb on - strand at 486.096 kb on + strand at 486.096 kb on + strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.102 kb on - strand at 486.102 kb on - strand at 486.133 kb on + strand at 486.134 kb on - strand at 486.149 kb on - strand at 486.149 kb on - strand at 486.149 kb on - strand at 486.166 kb on + strand at 486.166 kb on + strand at 486.167 kb on - strand at 486.167 kb on - strand at 486.167 kb on - strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.183 kb on + strand at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.211 kb on - strand, within DZA65_RS02235 at 486.211 kb on - strand, within DZA65_RS02235 at 486.248 kb on + strand, within DZA65_RS02235 at 486.255 kb on + strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.303 kb on - strand, within DZA65_RS02235 at 486.303 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.406 kb on - strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.436 kb on - strand, within DZA65_RS02235 at 486.511 kb on + strand, within DZA65_RS02235 at 486.511 kb on + strand, within DZA65_RS02235 at 486.512 kb on - strand at 486.512 kb on - strand at 486.512 kb on - strand at 486.514 kb on - strand at 486.514 kb on - strand at 486.598 kb on - strand at 486.598 kb on - strand at 486.600 kb on + strand at 486.601 kb on - strand at 486.707 kb on + strand, within DZA65_RS02240 at 486.714 kb on + strand, within DZA65_RS02240 at 486.715 kb on - strand, within DZA65_RS02240 at 486.757 kb on + strand, within DZA65_RS02240 at 486.757 kb on + strand, within DZA65_RS02240 at 486.758 kb on - strand, within DZA65_RS02240 at 486.758 kb on - strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 487.009 kb on - strand, within DZA65_RS02240
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 483,659 + DZA65_RS02225 0.37 -2.1 483,681 + DZA65_RS02225 0.39 +0.8 483,687 + DZA65_RS02225 0.39 -0.5 483,733 + DZA65_RS02225 0.43 +0.8 483,828 - DZA65_RS02225 0.50 -0.4 483,863 + DZA65_RS02225 0.53 -0.3 483,912 - DZA65_RS02225 0.57 -1.1 484,030 + DZA65_RS02225 0.66 -2.0 484,031 - DZA65_RS02225 0.66 -0.2 484,034 + DZA65_RS02225 0.66 -0.7 484,035 - DZA65_RS02225 0.66 -1.0 484,035 - DZA65_RS02225 0.66 +1.0 484,067 + DZA65_RS02225 0.68 -0.1 484,068 - DZA65_RS02225 0.68 +0.9 484,280 - -0.6 484,313 + DZA65_RS02225 0.87 +0.8 484,341 + DZA65_RS02225 0.89 +1.1 484,341 + DZA65_RS02225 0.89 +0.8 484,344 + DZA65_RS02225 0.89 +0.3 484,370 + -0.6 484,460 - +1.4 484,472 + +0.0 484,479 + -0.4 484,479 + +0.4 484,480 - -0.2 484,557 + -2.1 484,558 - -0.8 484,626 - -1.1 484,814 + DZA65_RS02230 0.13 -0.1 484,814 + DZA65_RS02230 0.13 -0.6 484,815 - DZA65_RS02230 0.13 -1.1 484,815 - DZA65_RS02230 0.13 +1.3 484,815 - DZA65_RS02230 0.13 -1.1 484,905 + DZA65_RS02230 0.20 +1.6 484,905 + DZA65_RS02230 0.20 -1.3 484,905 + DZA65_RS02230 0.20 -1.6 484,906 - DZA65_RS02230 0.20 -0.1 484,906 - DZA65_RS02230 0.20 -0.8 484,906 - DZA65_RS02230 0.20 +0.7 484,906 - DZA65_RS02230 0.20 -0.2 484,928 + DZA65_RS02230 0.21 -1.1 484,928 + DZA65_RS02230 0.21 -0.6 484,929 - DZA65_RS02230 0.21 -1.3 484,929 - DZA65_RS02230 0.21 +0.0 484,929 - DZA65_RS02230 0.21 +1.1 485,063 + DZA65_RS02230 0.31 +1.0 485,063 + DZA65_RS02230 0.31 +1.8 485,064 - DZA65_RS02230 0.31 -1.0 485,064 - DZA65_RS02230 0.31 +0.1 485,064 - DZA65_RS02230 0.31 -1.4 485,064 - DZA65_RS02230 0.31 +0.0 485,064 - DZA65_RS02230 0.31 +0.8 485,064 - +2.0 485,064 - DZA65_RS02230 0.31 +0.0 485,234 + DZA65_RS02230 0.43 +1.5 485,392 - DZA65_RS02230 0.54 +0.0 485,450 + DZA65_RS02230 0.59 -0.1 485,450 + DZA65_RS02230 0.59 +3.4 485,451 - DZA65_RS02230 0.59 -1.3 485,459 - DZA65_RS02230 0.59 +1.3 485,532 + DZA65_RS02230 0.65 +1.0 485,532 + DZA65_RS02230 0.65 +0.8 485,532 + DZA65_RS02230 0.65 +0.2 485,533 - DZA65_RS02230 0.65 +0.6 485,533 - DZA65_RS02230 0.65 +1.0 485,533 - DZA65_RS02230 0.65 -0.6 485,656 + DZA65_RS02230 0.73 -0.3 485,656 + DZA65_RS02230 0.73 +0.1 485,656 + DZA65_RS02230 0.73 -0.4 485,656 + DZA65_RS02230 0.73 +0.8 485,656 + +0.6 485,656 + DZA65_RS02230 0.73 +0.8 485,656 + DZA65_RS02230 0.73 +0.2 485,656 + DZA65_RS02230 0.73 +0.2 485,657 - DZA65_RS02230 0.73 +1.0 485,657 - -0.6 485,657 - DZA65_RS02230 0.73 +0.6 485,657 - DZA65_RS02230 0.73 -0.3 485,663 + DZA65_RS02230 0.74 +0.4 485,663 + DZA65_RS02230 0.74 +0.7 485,663 + DZA65_RS02230 0.74 +0.0 485,663 + DZA65_RS02230 0.74 -1.4 485,663 + DZA65_RS02230 0.74 -0.1 485,663 + DZA65_RS02230 0.74 +1.3 485,663 + DZA65_RS02230 0.74 +0.6 485,664 - DZA65_RS02230 0.74 -0.6 485,664 - DZA65_RS02230 0.74 +0.4 485,664 - DZA65_RS02230 0.74 +0.0 485,664 - DZA65_RS02230 0.74 +1.0 485,664 - DZA65_RS02230 0.74 -0.6 485,666 + DZA65_RS02230 0.74 +0.5 485,731 - DZA65_RS02230 0.79 +0.4 485,849 + DZA65_RS02230 0.87 +0.2 486,052 + +0.7 486,053 - -1.0 486,053 - +0.1 486,094 - +0.7 486,094 - -1.0 486,094 - +0.3 486,096 + -0.9 486,096 + -0.5 486,097 - +0.7 486,097 - -1.0 486,097 - +1.0 486,097 - +1.0 486,097 - +1.0 486,097 - +0.0 486,097 - -1.0 486,097 - +1.8 486,102 - +2.0 486,102 - -0.1 486,133 + -0.2 486,134 - -1.7 486,149 - +0.1 486,149 - +0.0 486,149 - -1.0 486,166 + -0.7 486,166 + -1.8 486,167 - -1.0 486,167 - -0.7 486,167 - +0.5 486,171 + -2.0 486,171 + -0.3 486,171 + -1.0 486,171 + -1.6 486,171 + -0.5 486,171 + +0.0 486,171 + -0.6 486,171 + +1.2 486,171 + +0.8 486,171 + +0.9 486,172 - -0.6 486,172 - +0.6 486,172 - +0.6 486,172 - -0.6 486,172 - -1.1 486,172 - -2.1 486,172 - +0.4 486,172 - +0.2 486,172 - -0.3 486,172 - +0.4 486,175 + -1.9 486,175 + -0.6 486,175 + -0.5 486,175 + -0.6 486,175 + -0.1 486,175 + -1.6 486,176 - -0.9 486,176 - -2.0 486,176 - +0.3 486,176 - -3.1 486,176 - +2.3 486,176 - -0.8 486,183 + -0.7 486,210 + DZA65_RS02235 0.10 +0.1 486,210 + DZA65_RS02235 0.10 -0.8 486,210 + DZA65_RS02235 0.10 -2.0 486,210 + DZA65_RS02235 0.10 +1.2 486,210 + DZA65_RS02235 0.10 +0.5 486,211 - DZA65_RS02235 0.10 +1.4 486,211 - DZA65_RS02235 0.10 +0.3 486,248 + DZA65_RS02235 0.20 +1.4 486,255 + DZA65_RS02235 0.22 -2.4 486,256 - DZA65_RS02235 0.22 +0.1 486,256 - DZA65_RS02235 0.22 -1.1 486,256 - DZA65_RS02235 0.22 -0.5 486,256 - DZA65_RS02235 0.22 +0.4 486,256 - DZA65_RS02235 0.22 +0.0 486,302 + DZA65_RS02235 0.34 +1.2 486,302 + DZA65_RS02235 0.34 -0.5 486,302 + DZA65_RS02235 0.34 +1.0 486,302 + DZA65_RS02235 0.34 +0.3 486,303 - DZA65_RS02235 0.35 -0.4 486,303 - DZA65_RS02235 0.35 +0.2 486,313 - DZA65_RS02235 0.37 -0.4 486,313 - DZA65_RS02235 0.37 -0.1 486,313 - DZA65_RS02235 0.37 -0.3 486,321 + DZA65_RS02235 0.39 +1.4 486,321 + DZA65_RS02235 0.39 -0.7 486,321 + DZA65_RS02235 0.39 -1.0 486,321 + DZA65_RS02235 0.39 +1.0 486,322 - DZA65_RS02235 0.40 +1.4 486,322 - DZA65_RS02235 0.40 +0.0 486,322 - DZA65_RS02235 0.40 +0.0 486,322 - DZA65_RS02235 0.40 -1.3 486,322 - DZA65_RS02235 0.40 -0.3 486,322 - DZA65_RS02235 0.40 -0.1 486,322 - DZA65_RS02235 0.40 -0.5 486,322 - DZA65_RS02235 0.40 +0.2 486,402 + DZA65_RS02235 0.61 -0.3 486,402 + DZA65_RS02235 0.61 +0.6 486,402 + DZA65_RS02235 0.61 +0.3 486,402 + DZA65_RS02235 0.61 +0.6 486,403 - DZA65_RS02235 0.61 -0.4 486,403 - DZA65_RS02235 0.61 -0.2 486,403 - DZA65_RS02235 0.61 +0.0 486,403 - DZA65_RS02235 0.61 -0.5 486,403 - DZA65_RS02235 0.61 +0.0 486,403 - DZA65_RS02235 0.61 +0.4 486,403 - DZA65_RS02235 0.61 +0.0 486,406 - DZA65_RS02235 0.62 -0.4 486,435 + DZA65_RS02235 0.70 +1.3 486,435 + DZA65_RS02235 0.70 +1.2 486,435 + DZA65_RS02235 0.70 +2.7 486,435 + DZA65_RS02235 0.70 +0.8 486,436 - DZA65_RS02235 0.70 -0.4 486,511 + DZA65_RS02235 0.90 -2.4 486,511 + DZA65_RS02235 0.90 +0.0 486,512 - +0.3 486,512 - +0.3 486,512 - +0.6 486,514 - -0.4 486,514 - -0.3 486,598 - -1.0 486,598 - -0.3 486,600 + +1.3 486,601 - +1.6 486,707 + DZA65_RS02240 0.10 -1.1 486,714 + DZA65_RS02240 0.11 +1.4 486,715 - DZA65_RS02240 0.11 +1.6 486,757 + DZA65_RS02240 0.17 -1.6 486,757 + DZA65_RS02240 0.17 -1.1 486,758 - DZA65_RS02240 0.17 -0.2 486,758 - DZA65_RS02240 0.17 -0.8 486,782 + DZA65_RS02240 0.20 -0.6 486,782 + DZA65_RS02240 0.20 -2.0 486,782 + DZA65_RS02240 0.20 +0.5 486,783 - DZA65_RS02240 0.20 +1.5 486,783 - DZA65_RS02240 0.20 +0.4 486,783 - DZA65_RS02240 0.20 +0.9 487,009 - DZA65_RS02240 0.48 -0.4
Or see this region's nucleotide sequence