Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01895

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01890 and DZA65_RS01895 are separated by 10 nucleotidesDZA65_RS01895 and DZA65_RS01900 are separated by 27 nucleotidesDZA65_RS01900 and DZA65_RS01905 overlap by 8 nucleotides DZA65_RS01890: DZA65_RS01890 - ABC transporter substrate-binding protein, at 415,903 to 417,444 _RS01890 DZA65_RS01895: DZA65_RS01895 - ABC transporter permease, at 417,455 to 418,459 _RS01895 DZA65_RS01900: DZA65_RS01900 - ABC transporter permease, at 418,487 to 419,308 _RS01900 DZA65_RS01905: DZA65_RS01905 - ABC transporter ATP-binding protein, at 419,301 to 420,896 _RS01905 Position (kb) 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 416.763 kb on + strand, within DZA65_RS01890at 416.794 kb on + strand, within DZA65_RS01890at 416.794 kb on + strand, within DZA65_RS01890at 416.795 kb on - strand, within DZA65_RS01890at 416.795 kb on - strand, within DZA65_RS01890at 416.817 kb on + strand, within DZA65_RS01890at 416.884 kb on + strand, within DZA65_RS01890at 416.915 kb on - strand, within DZA65_RS01890at 417.008 kb on + strand, within DZA65_RS01890at 417.009 kb on - strand, within DZA65_RS01890at 417.025 kb on + strand, within DZA65_RS01890at 417.025 kb on + strand, within DZA65_RS01890at 417.026 kb on - strand, within DZA65_RS01890at 417.283 kb on + strand, within DZA65_RS01890at 417.312 kb on + strandat 417.338 kb on - strandat 417.364 kb on - strandat 417.364 kb on - strandat 417.364 kb on - strandat 417.366 kb on + strandat 417.366 kb on + strandat 417.366 kb on + strandat 417.366 kb on + strandat 417.366 kb on + strandat 417.366 kb on + strandat 417.366 kb on + strandat 417.366 kb on + strandat 417.367 kb on - strandat 417.367 kb on - strandat 417.367 kb on - strandat 417.367 kb on - strandat 417.367 kb on - strandat 417.367 kb on - strandat 417.367 kb on - strandat 417.367 kb on - strandat 417.484 kb on + strandat 417.555 kb on + strandat 417.555 kb on + strandat 417.556 kb on - strand, within DZA65_RS01895at 417.702 kb on - strand, within DZA65_RS01895at 417.702 kb on - strand, within DZA65_RS01895at 417.785 kb on + strand, within DZA65_RS01895at 417.820 kb on + strand, within DZA65_RS01895at 417.820 kb on + strand, within DZA65_RS01895at 417.855 kb on + strand, within DZA65_RS01895at 417.855 kb on + strandat 417.856 kb on - strand, within DZA65_RS01895at 417.856 kb on - strand, within DZA65_RS01895at 417.875 kb on + strand, within DZA65_RS01895at 417.884 kb on - strand, within DZA65_RS01895at 417.884 kb on - strand, within DZA65_RS01895at 417.901 kb on - strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.953 kb on + strand, within DZA65_RS01895at 417.954 kb on - strand, within DZA65_RS01895at 417.957 kb on + strand, within DZA65_RS01895at 417.957 kb on + strand, within DZA65_RS01895at 417.957 kb on + strand, within DZA65_RS01895at 417.958 kb on - strand, within DZA65_RS01895at 418.021 kb on + strand, within DZA65_RS01895at 418.021 kb on + strand, within DZA65_RS01895at 418.021 kb on + strand, within DZA65_RS01895at 418.021 kb on + strand, within DZA65_RS01895at 418.022 kb on - strandat 418.022 kb on - strand, within DZA65_RS01895at 418.022 kb on - strand, within DZA65_RS01895at 418.022 kb on - strand, within DZA65_RS01895at 418.093 kb on + strand, within DZA65_RS01895at 418.094 kb on - strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.102 kb on + strand, within DZA65_RS01895at 418.103 kb on - strand, within DZA65_RS01895at 418.103 kb on - strand, within DZA65_RS01895at 418.103 kb on - strand, within DZA65_RS01895at 418.122 kb on + strand, within DZA65_RS01895at 418.123 kb on - strand, within DZA65_RS01895at 418.142 kb on + strand, within DZA65_RS01895at 418.142 kb on + strand, within DZA65_RS01895at 418.142 kb on + strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.143 kb on - strand, within DZA65_RS01895at 418.235 kb on - strand, within DZA65_RS01895at 418.253 kb on + strand, within DZA65_RS01895at 418.253 kb on + strand, within DZA65_RS01895at 418.254 kb on - strand, within DZA65_RS01895at 418.254 kb on - strand, within DZA65_RS01895at 418.254 kb on - strand, within DZA65_RS01895at 418.296 kb on - strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.313 kb on + strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strand, within DZA65_RS01895at 418.314 kb on - strandat 418.314 kb on - strand, within DZA65_RS01895at 418.325 kb on - strand, within DZA65_RS01895at 418.343 kb on - strand, within DZA65_RS01895at 418.343 kb on - strand, within DZA65_RS01895at 418.343 kb on - strand, within DZA65_RS01895at 418.385 kb on + strandat 418.386 kb on - strandat 418.386 kb on - strandat 418.396 kb on + strandat 418.397 kb on - strandat 418.397 kb on - strandat 418.397 kb on - strandat 418.397 kb on - strandat 418.478 kb on + strandat 418.479 kb on - strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.484 kb on + strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.485 kb on - strandat 418.578 kb on - strand, within DZA65_RS01900at 418.691 kb on - strand, within DZA65_RS01900at 418.873 kb on + strand, within DZA65_RS01900at 418.873 kb on + strand, within DZA65_RS01900at 418.902 kb on + strand, within DZA65_RS01900at 418.903 kb on - strand, within DZA65_RS01900at 418.924 kb on - strand, within DZA65_RS01900at 418.924 kb on - strand, within DZA65_RS01900at 418.924 kb on - strand, within DZA65_RS01900at 418.924 kb on - strand, within DZA65_RS01900at 419.075 kb on - strand, within DZA65_RS01900at 419.265 kb on + strandat 419.265 kb on + strandat 419.281 kb on + strandat 419.282 kb on - strandat 419.384 kb on + strandat 419.384 kb on + strandat 419.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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416,763 + DZA65_RS01890 0.56 -0.5
416,794 + DZA65_RS01890 0.58 +1.1
416,794 + DZA65_RS01890 0.58 +0.1
416,795 - DZA65_RS01890 0.58 -0.9
416,795 - DZA65_RS01890 0.58 +3.4
416,817 + DZA65_RS01890 0.59 +0.8
416,884 + DZA65_RS01890 0.64 +0.1
416,915 - DZA65_RS01890 0.66 +1.4
417,008 + DZA65_RS01890 0.72 -1.2
417,009 - DZA65_RS01890 0.72 +0.1
417,025 + DZA65_RS01890 0.73 +1.6
417,025 + DZA65_RS01890 0.73 -1.3
417,026 - DZA65_RS01890 0.73 +2.8
417,283 + DZA65_RS01890 0.89 +0.8
417,312 + +2.1
417,338 - +0.1
417,364 - +0.9
417,364 - -0.6
417,364 - +2.5
417,366 + -0.1
417,366 + +0.6
417,366 + -1.2
417,366 + +0.9
417,366 + +0.8
417,366 + +0.5
417,366 + +0.3
417,366 + +0.7
417,367 - -0.9
417,367 - +0.2
417,367 - -0.2
417,367 - +0.4
417,367 - -0.5
417,367 - -0.8
417,367 - -1.3
417,367 - -0.7
417,484 + +0.5
417,555 + -0.3
417,555 + +0.6
417,556 - DZA65_RS01895 0.10 +2.2
417,702 - DZA65_RS01895 0.25 -0.3
417,702 - DZA65_RS01895 0.25 +0.7
417,785 + DZA65_RS01895 0.33 +0.8
417,820 + DZA65_RS01895 0.36 -0.6
417,820 + DZA65_RS01895 0.36 -0.3
417,855 + DZA65_RS01895 0.40 +0.0
417,855 + +0.5
417,856 - DZA65_RS01895 0.40 -1.0
417,856 - DZA65_RS01895 0.40 -0.8
417,875 + DZA65_RS01895 0.42 +3.7
417,884 - DZA65_RS01895 0.43 -0.9
417,884 - DZA65_RS01895 0.43 -0.2
417,901 - DZA65_RS01895 0.44 -0.7
417,953 + DZA65_RS01895 0.50 -1.5
417,953 + DZA65_RS01895 0.50 -0.5
417,953 + DZA65_RS01895 0.50 -0.3
417,953 + DZA65_RS01895 0.50 -0.6
417,953 + DZA65_RS01895 0.50 +0.2
417,953 + DZA65_RS01895 0.50 -1.1
417,954 - DZA65_RS01895 0.50 +3.5
417,957 + DZA65_RS01895 0.50 -0.3
417,957 + DZA65_RS01895 0.50 -0.1
417,957 + DZA65_RS01895 0.50 +0.2
417,958 - DZA65_RS01895 0.50 +1.6
418,021 + DZA65_RS01895 0.56 +0.2
418,021 + DZA65_RS01895 0.56 -1.8
418,021 + DZA65_RS01895 0.56 -1.3
418,021 + DZA65_RS01895 0.56 -0.9
418,022 - +2.6
418,022 - DZA65_RS01895 0.56 -0.0
418,022 - DZA65_RS01895 0.56 -1.9
418,022 - DZA65_RS01895 0.56 -0.9
418,093 + DZA65_RS01895 0.63 -0.8
418,094 - DZA65_RS01895 0.64 -0.1
418,102 + DZA65_RS01895 0.64 +0.2
418,102 + DZA65_RS01895 0.64 -1.9
418,102 + DZA65_RS01895 0.64 +0.4
418,102 + DZA65_RS01895 0.64 +0.4
418,102 + DZA65_RS01895 0.64 -0.8
418,102 + DZA65_RS01895 0.64 -0.9
418,102 + DZA65_RS01895 0.64 -0.9
418,103 - DZA65_RS01895 0.64 +1.6
418,103 - DZA65_RS01895 0.64 +1.1
418,103 - DZA65_RS01895 0.64 -0.1
418,122 + DZA65_RS01895 0.66 +0.1
418,123 - DZA65_RS01895 0.66 -0.3
418,142 + DZA65_RS01895 0.68 -0.2
418,142 + DZA65_RS01895 0.68 +1.1
418,142 + DZA65_RS01895 0.68 +0.2
418,143 - DZA65_RS01895 0.68 +0.9
418,143 - DZA65_RS01895 0.68 +0.7
418,143 - DZA65_RS01895 0.68 +1.1
418,143 - DZA65_RS01895 0.68 +0.5
418,143 - DZA65_RS01895 0.68 -1.3
418,235 - DZA65_RS01895 0.78 +1.3
418,253 + DZA65_RS01895 0.79 +0.2
418,253 + DZA65_RS01895 0.79 +3.6
418,254 - DZA65_RS01895 0.80 -0.3
418,254 - DZA65_RS01895 0.80 -1.1
418,254 - DZA65_RS01895 0.80 -0.4
418,296 - DZA65_RS01895 0.84 -1.5
418,313 + DZA65_RS01895 0.85 +1.6
418,313 + DZA65_RS01895 0.85 -1.5
418,313 + DZA65_RS01895 0.85 +0.8
418,313 + DZA65_RS01895 0.85 +1.5
418,313 + DZA65_RS01895 0.85 -2.8
418,313 + DZA65_RS01895 0.85 -1.4
418,313 + DZA65_RS01895 0.85 -0.7
418,313 + DZA65_RS01895 0.85 -1.4
418,313 + DZA65_RS01895 0.85 +0.1
418,313 + DZA65_RS01895 0.85 +0.1
418,313 + DZA65_RS01895 0.85 -0.6
418,313 + DZA65_RS01895 0.85 -1.2
418,313 + DZA65_RS01895 0.85 +0.6
418,314 - DZA65_RS01895 0.85 -0.4
418,314 - DZA65_RS01895 0.85 -0.3
418,314 - DZA65_RS01895 0.85 +1.6
418,314 - DZA65_RS01895 0.85 -0.5
418,314 - DZA65_RS01895 0.85 -1.5
418,314 - DZA65_RS01895 0.85 -0.9
418,314 - DZA65_RS01895 0.85 -0.3
418,314 - DZA65_RS01895 0.85 +0.3
418,314 - DZA65_RS01895 0.85 +0.2
418,314 - DZA65_RS01895 0.85 +0.7
418,314 - DZA65_RS01895 0.85 +0.4
418,314 - DZA65_RS01895 0.85 -0.1
418,314 - DZA65_RS01895 0.85 +0.4
418,314 - DZA65_RS01895 0.85 +1.1
418,314 - DZA65_RS01895 0.85 -0.8
418,314 - DZA65_RS01895 0.85 -0.3
418,314 - +1.5
418,314 - DZA65_RS01895 0.85 -0.0
418,325 - DZA65_RS01895 0.87 -2.6
418,343 - DZA65_RS01895 0.88 +0.8
418,343 - DZA65_RS01895 0.88 -1.7
418,343 - DZA65_RS01895 0.88 -1.9
418,385 + -1.8
418,386 - +1.1
418,386 - +0.2
418,396 + -0.2
418,397 - -1.3
418,397 - +1.4
418,397 - +0.4
418,397 - -1.3
418,478 + +1.1
418,479 - +0.8
418,484 + +0.3
418,484 + -0.8
418,484 + -0.3
418,484 + -0.6
418,484 + +2.3
418,484 + -0.4
418,484 + -0.8
418,484 + -1.3
418,484 + +0.1
418,484 + -0.5
418,484 + +0.1
418,484 + -0.1
418,484 + -1.9
418,485 - -0.5
418,485 - +0.2
418,485 - +1.8
418,485 - +0.1
418,485 - -1.9
418,485 - -1.1
418,485 - +1.4
418,485 - -1.0
418,485 - +0.7
418,485 - -0.9
418,485 - -1.1
418,485 - -1.2
418,485 - -0.3
418,485 - -0.0
418,485 - -1.3
418,485 - -0.9
418,485 - +0.4
418,485 - +0.5
418,485 - -1.1
418,578 - DZA65_RS01900 0.11 -0.1
418,691 - DZA65_RS01900 0.25 +0.8
418,873 + DZA65_RS01900 0.47 -1.3
418,873 + DZA65_RS01900 0.47 -0.5
418,902 + DZA65_RS01900 0.50 -0.2
418,903 - DZA65_RS01900 0.51 +4.5
418,924 - DZA65_RS01900 0.53 +1.5
418,924 - DZA65_RS01900 0.53 +1.1
418,924 - DZA65_RS01900 0.53 -0.8
418,924 - DZA65_RS01900 0.53 +0.6
419,075 - DZA65_RS01900 0.72 -0.8
419,265 + -0.9
419,265 + +0.1
419,281 + +0.8
419,282 - -1.9
419,384 + +0.7
419,384 + +0.6
419,384 + -0.8

Or see this region's nucleotide sequence