Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00750 and DZA65_RS00755 are separated by 293 nucleotides DZA65_RS00755 and DZA65_RS00760 are separated by 238 nucleotides DZA65_RS00760 and DZA65_RS00765 are separated by 11 nucleotides DZA65_RS00765 and DZA65_RS00770 are separated by 75 nucleotides
DZA65_RS00750: DZA65_RS00750 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 170,423 to 171,622
_RS00750
DZA65_RS00755: DZA65_RS00755 - JAB domain-containing protein, at 171,916 to 172,581
_RS00755
DZA65_RS00760: DZA65_RS00760 - 50S ribosomal protein L28, at 172,820 to 173,056
_RS00760
DZA65_RS00765: DZA65_RS00765 - 50S ribosomal protein L33, at 173,068 to 173,235
_RS00765
DZA65_RS00770: DZA65_RS00770 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 173,311 to 174,120
_RS00770
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.729 kb on - strand at 171.729 kb on - strand at 171.763 kb on + strand at 171.764 kb on - strand at 171.764 kb on - strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.797 kb on + strand at 171.886 kb on - strand at 171.886 kb on - strand at 171.886 kb on - strand at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.141 kb on + strand, within DZA65_RS00755 at 172.141 kb on + strand, within DZA65_RS00755 at 172.142 kb on - strand, within DZA65_RS00755 at 172.142 kb on - strand, within DZA65_RS00755 at 172.142 kb on - strand, within DZA65_RS00755 at 172.240 kb on + strand, within DZA65_RS00755 at 172.240 kb on + strand, within DZA65_RS00755 at 172.240 kb on + strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.351 kb on - strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.425 kb on + strand, within DZA65_RS00755 at 172.425 kb on + strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.550 kb on - strand at 172.550 kb on - strand at 172.587 kb on - strand at 172.587 kb on - strand at 173.277 kb on + strand at 173.373 kb on + strand at 173.373 kb on + strand at 173.374 kb on - strand at 173.383 kb on + strand at 173.383 kb on + strand at 173.384 kb on - strand at 173.384 kb on - strand at 173.386 kb on - strand at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.513 kb on + strand, within DZA65_RS00770 at 173.527 kb on + strand, within DZA65_RS00770 at 173.560 kb on + strand, within DZA65_RS00770 at 173.561 kb on - strand, within DZA65_RS00770 at 173.561 kb on - strand, within DZA65_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 171,729 - -2.2 171,729 - -0.1 171,763 + +0.5 171,764 - -0.5 171,764 - -0.8 171,768 + +0.1 171,768 + -0.2 171,768 + +0.7 171,768 + -0.1 171,768 + -1.5 171,768 + -1.4 171,768 + -0.9 171,769 - +0.4 171,769 - -0.4 171,769 - +0.3 171,769 - +2.1 171,769 - +0.9 171,769 - +0.3 171,769 - -0.5 171,769 - -0.0 171,778 + +0.6 171,778 + +1.9 171,778 + -0.2 171,778 + -0.1 171,778 + -1.1 171,778 + -0.7 171,793 + -0.3 171,793 + -1.7 171,793 + -0.8 171,793 + +0.8 171,793 + +0.7 171,793 + -0.2 171,793 + -0.2 171,794 - -0.0 171,794 - -0.1 171,794 - +1.4 171,794 - -0.9 171,794 - +0.3 171,794 - -1.3 171,794 - -0.3 171,794 - -0.5 171,794 - -0.4 171,794 - -0.0 171,794 - -0.1 171,794 - +0.1 171,794 - -0.7 171,797 + +0.3 171,886 - +0.1 171,886 - -0.4 171,886 - -0.0 172,078 + DZA65_RS00755 0.24 +0.1 172,078 + DZA65_RS00755 0.24 -0.5 172,078 + DZA65_RS00755 0.24 +1.0 172,078 + DZA65_RS00755 0.24 -0.9 172,078 + DZA65_RS00755 0.24 +2.5 172,078 + DZA65_RS00755 0.24 -0.8 172,078 + DZA65_RS00755 0.24 +0.5 172,078 + DZA65_RS00755 0.24 -0.7 172,079 - DZA65_RS00755 0.24 +0.5 172,079 - DZA65_RS00755 0.24 +1.3 172,079 - DZA65_RS00755 0.24 +0.7 172,079 - DZA65_RS00755 0.24 -2.7 172,079 - DZA65_RS00755 0.24 +0.4 172,079 - DZA65_RS00755 0.24 +0.6 172,141 + DZA65_RS00755 0.34 -0.1 172,141 + DZA65_RS00755 0.34 +0.4 172,142 - DZA65_RS00755 0.34 +1.0 172,142 - DZA65_RS00755 0.34 +0.2 172,142 - DZA65_RS00755 0.34 +0.2 172,240 + DZA65_RS00755 0.49 -0.3 172,240 + DZA65_RS00755 0.49 +0.9 172,240 + DZA65_RS00755 0.49 -0.1 172,241 - DZA65_RS00755 0.49 -0.6 172,241 - DZA65_RS00755 0.49 -0.6 172,241 - DZA65_RS00755 0.49 -1.1 172,241 - DZA65_RS00755 0.49 -0.3 172,241 - DZA65_RS00755 0.49 +1.1 172,351 - DZA65_RS00755 0.65 -1.5 172,361 + DZA65_RS00755 0.67 +0.0 172,361 + DZA65_RS00755 0.67 +1.7 172,361 + DZA65_RS00755 0.67 -0.7 172,361 + DZA65_RS00755 0.67 +0.9 172,361 + DZA65_RS00755 0.67 +0.2 172,361 + DZA65_RS00755 0.67 -0.5 172,362 - DZA65_RS00755 0.67 +0.2 172,362 - DZA65_RS00755 0.67 -0.3 172,362 - DZA65_RS00755 0.67 -1.1 172,362 - DZA65_RS00755 0.67 -0.6 172,425 + DZA65_RS00755 0.76 +0.3 172,425 + DZA65_RS00755 0.76 +0.3 172,426 - DZA65_RS00755 0.77 -0.3 172,426 - DZA65_RS00755 0.77 -0.6 172,426 - DZA65_RS00755 0.77 -0.1 172,550 - +0.9 172,550 - -0.3 172,587 - +0.5 172,587 - +0.2 173,277 + -0.5 173,373 + +0.3 173,373 + -0.3 173,374 - +0.6 173,383 + -1.2 173,383 + -0.2 173,384 - -2.1 173,384 - -0.3 173,386 - +1.1 173,482 + DZA65_RS00770 0.21 +1.7 173,482 + DZA65_RS00770 0.21 +0.6 173,482 + DZA65_RS00770 0.21 +2.1 173,482 + DZA65_RS00770 0.21 -1.4 173,482 + DZA65_RS00770 0.21 +0.6 173,513 + DZA65_RS00770 0.25 -0.5 173,527 + DZA65_RS00770 0.27 +0.2 173,560 + DZA65_RS00770 0.31 -1.7 173,561 - DZA65_RS00770 0.31 +1.3 173,561 - DZA65_RS00770 0.31 -1.5
Or see this region's nucleotide sequence