Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00715 and DZA65_RS00720 are separated by 248 nucleotides DZA65_RS00720 and DZA65_RS00725 are separated by 6 nucleotides DZA65_RS00725 and DZA65_RS00730 are separated by 178 nucleotides
DZA65_RS00715: DZA65_RS00715 - DUF1611 domain-containing protein, at 165,606 to 166,613
_RS00715
DZA65_RS00720: DZA65_RS00720 - DUF202 domain-containing protein, at 166,862 to 167,194
_RS00720
DZA65_RS00725: DZA65_RS00725 - DUF202 domain-containing protein, at 167,201 to 167,593
_RS00725
DZA65_RS00730: DZA65_RS00730 - ribonuclease PH, at 167,772 to 168,488
_RS00730
Position (kb) 167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 166.263 kb on + strand, within DZA65_RS00715 at 166.263 kb on + strand, within DZA65_RS00715 at 166.264 kb on - strand, within DZA65_RS00715 at 166.264 kb on - strand, within DZA65_RS00715 at 166.427 kb on + strand, within DZA65_RS00715 at 166.455 kb on - strand, within DZA65_RS00715 at 166.594 kb on + strand at 166.594 kb on + strand at 166.594 kb on + strand at 166.594 kb on + strand at 166.595 kb on - strand at 166.595 kb on - strand at 166.595 kb on - strand at 166.595 kb on - strand at 166.595 kb on - strand at 166.621 kb on + strand at 166.645 kb on + strand at 166.653 kb on + strand at 166.653 kb on + strand at 166.653 kb on + strand at 166.654 kb on - strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.657 kb on + strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.658 kb on - strand at 166.663 kb on + strand at 166.664 kb on - strand at 166.664 kb on - strand at 166.664 kb on - strand at 166.664 kb on - strand at 166.699 kb on + strand at 166.711 kb on - strand at 166.711 kb on - strand at 166.711 kb on - strand at 166.711 kb on - strand at 166.724 kb on - strand at 166.724 kb on - strand at 166.724 kb on - strand at 166.725 kb on + strand at 166.725 kb on + strand at 166.725 kb on + strand at 166.726 kb on - strand at 166.726 kb on - strand at 166.726 kb on - strand at 166.726 kb on - strand at 166.776 kb on + strand at 166.831 kb on + strand at 166.831 kb on + strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.832 kb on - strand at 166.840 kb on + strand at 166.841 kb on - strand at 166.892 kb on + strand at 166.892 kb on + strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.893 kb on - strand at 166.905 kb on - strand, within DZA65_RS00720 at 166.952 kb on - strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.004 kb on + strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.005 kb on - strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.090 kb on + strand, within DZA65_RS00720 at 167.091 kb on - strand, within DZA65_RS00720 at 167.091 kb on - strand, within DZA65_RS00720 at 167.098 kb on + strand, within DZA65_RS00720 at 167.153 kb on + strand, within DZA65_RS00720 at 167.177 kb on - strand at 167.202 kb on + strand at 167.202 kb on + strand at 167.203 kb on - strand at 167.263 kb on + strand, within DZA65_RS00725 at 167.264 kb on - strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.278 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.280 kb on + strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.281 kb on - strand, within DZA65_RS00725 at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.626 kb on + strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.627 kb on - strand at 167.691 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.730 kb on + strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.731 kb on - strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.732 kb on + strand at 167.733 kb on - strand at 167.733 kb on - strand at 167.747 kb on + strand at 167.748 kb on - strand at 167.873 kb on + strand, within DZA65_RS00730 at 167.958 kb on + strand, within DZA65_RS00730 at 167.958 kb on + strand, within DZA65_RS00730 at 167.959 kb on - strand at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.963 kb on + strand, within DZA65_RS00730 at 167.964 kb on - strand, within DZA65_RS00730 at 168.099 kb on + strand at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.099 kb on + strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.100 kb on - strand, within DZA65_RS00730 at 168.107 kb on + strand, within DZA65_RS00730 at 168.108 kb on - strand, within DZA65_RS00730 at 168.108 kb on - strand, within DZA65_RS00730 at 168.195 kb on - strand, within DZA65_RS00730 at 168.195 kb on - strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.301 kb on - strand, within DZA65_RS00730 at 168.301 kb on - strand, within DZA65_RS00730 at 168.486 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.523 kb on - strand at 168.523 kb on - strand at 168.523 kb on - strand at 168.524 kb on + strand at 168.538 kb on + strand at 168.539 kb on - strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 166,263 + DZA65_RS00715 0.65 +0.8 166,263 + DZA65_RS00715 0.65 +0.7 166,264 - DZA65_RS00715 0.65 +1.4 166,264 - DZA65_RS00715 0.65 -0.9 166,427 + DZA65_RS00715 0.81 -1.5 166,455 - DZA65_RS00715 0.84 +0.1 166,594 + +0.7 166,594 + -0.5 166,594 + -0.3 166,594 + -2.2 166,595 - -0.1 166,595 - +0.7 166,595 - -1.2 166,595 - -1.4 166,595 - -0.3 166,621 + +2.1 166,645 + -1.9 166,653 + +0.7 166,653 + +1.1 166,653 + +0.7 166,654 - -1.7 166,657 + -0.3 166,657 + -0.5 166,657 + -0.5 166,657 + -0.3 166,657 + -0.7 166,657 + -0.9 166,657 + +0.1 166,657 + +1.3 166,657 + +0.2 166,657 + +1.1 166,657 + -0.5 166,657 + -0.1 166,657 + +1.0 166,657 + +1.8 166,657 + +1.7 166,657 + -0.4 166,657 + +0.7 166,657 + +1.1 166,657 + +1.1 166,657 + +1.1 166,657 + +0.1 166,657 + +0.0 166,657 + +1.5 166,657 + +0.3 166,658 - -0.9 166,658 - +1.1 166,658 - -0.2 166,658 - +0.1 166,658 - -0.2 166,658 - +0.4 166,658 - +0.1 166,658 - +0.2 166,658 - -1.5 166,658 - +0.1 166,658 - +0.3 166,658 - +0.1 166,658 - +0.3 166,658 - +1.7 166,658 - +1.2 166,658 - +0.7 166,658 - +0.3 166,658 - -0.3 166,658 - +0.2 166,658 - +0.2 166,658 - -0.5 166,663 + +0.8 166,664 - +1.6 166,664 - +0.7 166,664 - -0.6 166,664 - -0.5 166,699 + -2.7 166,711 - +0.8 166,711 - -2.4 166,711 - +0.9 166,711 - -0.7 166,724 - +0.1 166,724 - -0.9 166,724 - +1.8 166,725 + -0.0 166,725 + -0.3 166,725 + -0.2 166,726 - -0.4 166,726 - +1.3 166,726 - -0.6 166,726 - -0.9 166,776 + -0.2 166,831 + -0.8 166,831 + -0.4 166,832 - -1.5 166,832 - -0.6 166,832 - -0.2 166,832 - -1.7 166,832 - -0.5 166,840 + +1.5 166,841 - +0.1 166,892 + +1.5 166,892 + +2.1 166,893 - -0.1 166,893 - -0.4 166,893 - -0.5 166,893 - -0.1 166,905 - DZA65_RS00720 0.13 +1.1 166,952 - DZA65_RS00720 0.27 +0.8 167,004 + DZA65_RS00720 0.43 -0.5 167,004 + DZA65_RS00720 0.43 +0.6 167,004 + DZA65_RS00720 0.43 -0.7 167,004 + DZA65_RS00720 0.43 +1.4 167,005 - DZA65_RS00720 0.43 +2.1 167,005 - DZA65_RS00720 0.43 -0.8 167,005 - DZA65_RS00720 0.43 +2.8 167,005 - DZA65_RS00720 0.43 -1.2 167,005 - DZA65_RS00720 0.43 +0.1 167,005 - DZA65_RS00720 0.43 +1.0 167,005 - DZA65_RS00720 0.43 -0.8 167,005 - DZA65_RS00720 0.43 +1.2 167,090 + DZA65_RS00720 0.68 -0.5 167,090 + DZA65_RS00720 0.68 -0.2 167,090 + DZA65_RS00720 0.68 -1.2 167,090 + DZA65_RS00720 0.68 -0.5 167,090 + DZA65_RS00720 0.68 -0.5 167,090 + DZA65_RS00720 0.68 +0.8 167,091 - DZA65_RS00720 0.69 -0.6 167,091 - DZA65_RS00720 0.69 -1.7 167,098 + DZA65_RS00720 0.71 -1.8 167,153 + DZA65_RS00720 0.87 -0.5 167,177 - -1.3 167,202 + -0.5 167,202 + +0.7 167,203 - -1.8 167,263 + DZA65_RS00725 0.16 +1.1 167,264 - DZA65_RS00725 0.16 +0.8 167,278 + DZA65_RS00725 0.20 +2.2 167,278 + DZA65_RS00725 0.20 -0.7 167,278 + DZA65_RS00725 0.20 +1.3 167,280 + DZA65_RS00725 0.20 -0.8 167,280 + DZA65_RS00725 0.20 -0.5 167,280 + DZA65_RS00725 0.20 +0.7 167,280 + DZA65_RS00725 0.20 -0.8 167,280 + DZA65_RS00725 0.20 +0.8 167,281 - DZA65_RS00725 0.20 +0.0 167,281 - DZA65_RS00725 0.20 +0.3 167,281 - DZA65_RS00725 0.20 +1.3 167,281 - DZA65_RS00725 0.20 -2.1 167,281 - DZA65_RS00725 0.20 +0.3 167,281 - DZA65_RS00725 0.20 +1.1 167,281 - DZA65_RS00725 0.20 +0.9 167,281 - DZA65_RS00725 0.20 -0.1 167,281 - DZA65_RS00725 0.20 -0.4 167,626 + -0.3 167,626 + +0.1 167,626 + +1.1 167,626 + -0.2 167,626 + +1.5 167,626 + +0.7 167,627 - -1.7 167,627 - -0.4 167,627 - -0.9 167,627 - -1.9 167,627 - -1.9 167,627 - -1.1 167,627 - -1.2 167,627 - +3.5 167,627 - +0.3 167,627 - +0.6 167,691 + -0.1 167,730 + +0.2 167,730 + -1.2 167,730 + -1.2 167,730 + -0.2 167,730 + -1.2 167,730 + -0.2 167,730 + -0.9 167,730 + +0.6 167,731 - -2.2 167,731 - -1.2 167,731 - +0.1 167,731 - +1.1 167,731 - +0.8 167,731 - -0.7 167,731 - -0.5 167,731 - -0.5 167,732 + -0.2 167,732 + +1.5 167,732 + +0.8 167,732 + +0.7 167,732 + -0.2 167,732 + -0.8 167,732 + -0.5 167,732 + -0.5 167,732 + +2.7 167,733 - -0.2 167,733 - -0.2 167,747 + -0.4 167,748 - -0.1 167,873 + DZA65_RS00730 0.14 -0.7 167,958 + DZA65_RS00730 0.26 -0.7 167,958 + DZA65_RS00730 0.26 -0.6 167,959 - +1.7 167,963 + DZA65_RS00730 0.27 +1.1 167,963 + DZA65_RS00730 0.27 +0.7 167,963 + DZA65_RS00730 0.27 -0.4 167,963 + DZA65_RS00730 0.27 +1.1 167,964 - DZA65_RS00730 0.27 +1.4 168,099 + -0.5 168,099 + DZA65_RS00730 0.46 +1.1 168,099 + DZA65_RS00730 0.46 +2.0 168,099 + DZA65_RS00730 0.46 -1.1 168,099 + DZA65_RS00730 0.46 +0.8 168,099 + DZA65_RS00730 0.46 -0.4 168,099 + DZA65_RS00730 0.46 +0.3 168,099 + DZA65_RS00730 0.46 +0.3 168,099 + DZA65_RS00730 0.46 -1.4 168,099 + DZA65_RS00730 0.46 +0.2 168,099 + DZA65_RS00730 0.46 +1.5 168,100 - DZA65_RS00730 0.46 -1.0 168,100 - DZA65_RS00730 0.46 -0.2 168,100 - DZA65_RS00730 0.46 +0.1 168,100 - DZA65_RS00730 0.46 -1.4 168,100 - DZA65_RS00730 0.46 +1.6 168,100 - DZA65_RS00730 0.46 -0.2 168,107 + DZA65_RS00730 0.47 +1.0 168,108 - DZA65_RS00730 0.47 +0.2 168,108 - DZA65_RS00730 0.47 +0.7 168,195 - DZA65_RS00730 0.59 -0.2 168,195 - DZA65_RS00730 0.59 -0.8 168,300 + DZA65_RS00730 0.74 -0.7 168,300 + DZA65_RS00730 0.74 -0.7 168,300 + DZA65_RS00730 0.74 -0.9 168,300 + DZA65_RS00730 0.74 +0.7 168,300 + DZA65_RS00730 0.74 +0.2 168,300 + DZA65_RS00730 0.74 -0.9 168,301 - DZA65_RS00730 0.74 -0.4 168,301 - DZA65_RS00730 0.74 -0.5 168,486 + -0.2 168,522 + +0.7 168,522 + -0.0 168,522 + +1.5 168,522 + +2.7 168,523 - -1.4 168,523 - -0.1 168,523 - +0.4 168,524 + -0.5 168,538 + -0.2 168,539 - -1.0 168,543 + -0.4 168,543 + +0.1 168,543 + +0.3 168,543 + -1.7 168,543 + -1.1 168,543 + +0.1 168,543 + +1.1 168,543 + +0.1 168,543 + +0.5 168,543 + +0.9 168,543 + -0.1 168,543 + -0.3 168,543 + -0.9 168,543 + -0.8 168,543 + -0.6 168,543 + +1.4 168,543 + -0.5 168,543 + -0.9 168,543 + -0.1 168,543 + -1.3 168,543 + -0.3 168,543 + -0.6 168,543 + -2.2 168,543 + +0.4 168,543 + -3.0 168,544 - -0.9 168,544 - -0.2 168,544 - -0.2 168,544 - +0.1 168,544 - +0.7 168,544 - -0.2 168,544 - -0.5 168,544 - -0.2 168,544 - +0.5 168,544 - -0.5 168,544 - -0.8 168,544 - -0.9 168,544 - +0.1 168,544 - +0.1 168,544 - -1.1 168,544 - -1.1 168,544 - +1.3 168,544 - -1.5 168,544 - -0.3 168,544 - +0.5 168,544 - -1.5 168,544 - +1.1 168,544 - -0.5 168,544 - +0.1 168,544 - +2.1 168,544 - -0.9 168,544 - -0.0 168,544 - +1.1 168,544 - -0.2 168,544 - -1.1 168,586 - -1.7
Or see this region's nucleotide sequence