Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00390

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
94,475	+				-1.7
94,475	+				+0.7
94,475	+				-2.7
94,475	+				-1.8
94,475	+				+1.9
94,476	-				+0.4
94,476	-				+0.1
94,476	-				+1.4
94,476	-				+0.9
94,476	-				+0.8
94,476	-				+0.5
94,476	-				-1.2
94,476	-				+1.4
94,476	-				+1.4
94,476	-				+0.5
94,476	-				+0.1
94,476	-				+0.1
94,476	-				+0.2
94,476	-				+0.0
94,476	-				+0.5
94,476	-				+0.5
94,476	-				-1.0
94,476	-				-0.9
94,479	+				-1.5
94,479	+				-0.4
94,479	+				+0.3
94,479	+				-0.9
94,479	+				-1.9
94,479	+				-2.1
94,479	+				-0.9
94,479	+				-0.0
94,479	+				-2.5
94,479	+				-0.9
94,479	+				-0.7
94,479	+				+0.0
94,479	+				-1.5
94,479	+				-0.8
94,479	+				+0.2
94,479	+				+0.2
94,479	+				+0.8
94,479	+				+0.7
94,479	+				-0.0
94,479	+				-0.1
94,479	+				-0.0
94,479	+				+0.5
94,479	+				-2.2
94,479	+				+1.6
94,479	+				-0.3
94,479	+				+0.2
94,479	+				-0.2
94,479	+				+0.1
94,480	-				-0.6
94,480	-				-0.3
94,480	-				+0.5
94,480	-				+0.3
94,480	-				-0.5
94,480	-				-0.9
94,480	-				+0.1
94,480	-				+0.3
94,480	-				+0.1
94,491	+				+0.9
94,491	+				-0.2
94,491	+				+0.9
94,491	+				-2.3
94,491	+				-0.2
94,491	+				+0.1
94,491	+				-0.2
94,491	+				-0.2
94,491	+				+0.9
94,491	+				-0.5
94,491	+				+1.1
94,491	+				-1.7
94,491	+				+0.2
94,491	+				-1.7
94,491	+				-0.4
94,491	+				-0.3
94,492	-				+1.9
94,492	-				-0.0
94,554	+				+0.3
94,555	-				+2.1
94,663	+		DZA65_RS00385	0.13	-0.0
94,663	+		DZA65_RS00385	0.13	+0.1
94,664	-		DZA65_RS00385	0.13	+0.9
94,664	-		DZA65_RS00385	0.13	+3.3
94,740	+		DZA65_RS00385	0.21	+0.5
94,740	+		DZA65_RS00385	0.21	+0.9
94,740	+		DZA65_RS00385	0.21	-1.2
94,740	+		DZA65_RS00385	0.21	-0.0
94,741	-		DZA65_RS00385	0.21	+2.3
94,741	-		DZA65_RS00385	0.21	+1.7
94,741	-		DZA65_RS00385	0.21	-0.6
94,741	-		DZA65_RS00385	0.21	+1.5
94,741	-		DZA65_RS00385	0.21	+1.1
94,780	+		DZA65_RS00385	0.25	+1.7
94,780	+		DZA65_RS00385	0.25	-0.3
94,780	+		DZA65_RS00385	0.25	-0.9
94,781	-		DZA65_RS00385	0.26	-0.7
94,781	-		DZA65_RS00385	0.26	+0.4
94,781	-				+0.5
94,958	+		DZA65_RS00385	0.44	-0.4
94,958	+		DZA65_RS00385	0.44	+0.4
94,958	+		DZA65_RS00385	0.44	+1.1
94,958	+		DZA65_RS00385	0.44	-0.9
94,958	+		DZA65_RS00385	0.44	-1.3
94,959	-		DZA65_RS00385	0.45	-0.4
94,959	-		DZA65_RS00385	0.45	-0.7
94,959	-		DZA65_RS00385	0.45	-1.9
94,959	-		DZA65_RS00385	0.45	+0.8
94,959	-		DZA65_RS00385	0.45	+2.0
94,959	-		DZA65_RS00385	0.45	+1.7
94,959	-		DZA65_RS00385	0.45	+1.1
94,959	-		DZA65_RS00385	0.45	-0.0
94,959	-		DZA65_RS00385	0.45	+2.4
95,079	+		DZA65_RS00385	0.57	-0.7
95,079	+		DZA65_RS00385	0.57	-1.2
95,079	+		DZA65_RS00385	0.57	-0.7
95,080	-		DZA65_RS00385	0.58	+0.9
95,107	+		DZA65_RS00385	0.60	+0.2
95,107	+		DZA65_RS00385	0.60	-0.5
95,107	+		DZA65_RS00385	0.60	+0.1
95,107	+		DZA65_RS00385	0.60	+1.1
95,107	+		DZA65_RS00385	0.60	-0.7
95,107	+		DZA65_RS00385	0.60	+0.8
95,107	+		DZA65_RS00385	0.60	-0.2
95,108	-		DZA65_RS00385	0.61	-1.7
95,108	-		DZA65_RS00385	0.61	+1.1
95,109	+		DZA65_RS00385	0.61	-2.0
95,109	+		DZA65_RS00385	0.61	-0.1
95,109	+		DZA65_RS00385	0.61	-1.3
95,109	+		DZA65_RS00385	0.61	+0.1
95,109	+		DZA65_RS00385	0.61	-0.7
95,110	-		DZA65_RS00385	0.61	-0.1
95,110	-		DZA65_RS00385	0.61	-1.5
95,112	+		DZA65_RS00385	0.61	+0.1
95,112	+		DZA65_RS00385	0.61	-1.7
95,113	-		DZA65_RS00385	0.61	-0.1
95,113	-		DZA65_RS00385	0.61	-0.7
95,113	-		DZA65_RS00385	0.61	+1.1
95,113	-		DZA65_RS00385	0.61	+2.1
95,113	-		DZA65_RS00385	0.61	+1.9
95,113	-		DZA65_RS00385	0.61	+1.4
95,113	-		DZA65_RS00385	0.61	-0.8
95,154	+		DZA65_RS00385	0.65	-1.0
95,154	+				-1.2
95,154	+		DZA65_RS00385	0.65	-0.6
95,154	+		DZA65_RS00385	0.65	-1.1
95,154	+		DZA65_RS00385	0.65	-0.8
95,154	+		DZA65_RS00385	0.65	+0.5
95,154	+		DZA65_RS00385	0.65	-0.2
95,155	-		DZA65_RS00385	0.66	-1.4
95,155	-		DZA65_RS00385	0.66	+0.3
95,184	+		DZA65_RS00385	0.69	+0.4
95,184	+		DZA65_RS00385	0.69	+0.1
95,184	+		DZA65_RS00385	0.69	-1.7
95,185	-		DZA65_RS00385	0.69	-0.3
95,185	-		DZA65_RS00385	0.69	+0.1
95,185	-		DZA65_RS00385	0.69	+1.1
95,213	+		DZA65_RS00385	0.72	+0.5
95,213	+		DZA65_RS00385	0.72	-0.5
95,213	+		DZA65_RS00385	0.72	-0.3
95,213	+		DZA65_RS00385	0.72	-0.4
95,213	+		DZA65_RS00385	0.72	-0.9
95,213	+		DZA65_RS00385	0.72	+0.1
95,213	+		DZA65_RS00385	0.72	+0.6
95,213	+		DZA65_RS00385	0.72	+0.5
95,213	+		DZA65_RS00385	0.72	+0.9
95,213	+		DZA65_RS00385	0.72	+0.9
95,214	-		DZA65_RS00385	0.72	-0.5
95,214	-		DZA65_RS00385	0.72	-0.5
95,233	+		DZA65_RS00385	0.74	-0.6
95,233	+		DZA65_RS00385	0.74	-1.2
95,253	+		DZA65_RS00385	0.76	-0.1
95,253	+		DZA65_RS00385	0.76	-0.1
95,253	+		DZA65_RS00385	0.76	+0.6
95,265	-		DZA65_RS00385	0.77	+0.4
95,267	+		DZA65_RS00385	0.78	+0.1
95,267	+		DZA65_RS00385	0.78	-1.9
95,267	+		DZA65_RS00385	0.78	+0.1
95,267	+		DZA65_RS00385	0.78	+0.4
95,267	+		DZA65_RS00385	0.78	+0.5
95,267	+		DZA65_RS00385	0.78	+0.3
95,267	+		DZA65_RS00385	0.78	-0.9
95,267	+		DZA65_RS00385	0.78	+1.1
95,268	-		DZA65_RS00385	0.78	-0.5
95,268	-		DZA65_RS00385	0.78	+0.4
95,268	-		DZA65_RS00385	0.78	-1.9
95,268	-		DZA65_RS00385	0.78	-1.5
95,293	-		DZA65_RS00385	0.80	+1.8
95,293	-		DZA65_RS00385	0.80	-2.1
95,306	+		DZA65_RS00385	0.82	+0.1
95,341	+		DZA65_RS00385	0.86	+1.1
95,342	-		DZA65_RS00385	0.86	-0.2
95,342	-		DZA65_RS00385	0.86	-0.5
95,342	-		DZA65_RS00385	0.86	+1.1
95,342	-		DZA65_RS00385	0.86	+0.5
95,342	-		DZA65_RS00385	0.86	+0.2
95,342	-		DZA65_RS00385	0.86	-1.2
95,354	+		DZA65_RS00385	0.87	-1.3
95,354	+		DZA65_RS00385	0.87	-0.1
95,354	+		DZA65_RS00385	0.87	-0.9
95,354	+		DZA65_RS00385	0.87	-1.0
95,355	-		DZA65_RS00385	0.87	-1.5
95,357	+		DZA65_RS00385	0.87	-0.5
95,357	+		DZA65_RS00385	0.87	-0.1
95,357	+		DZA65_RS00385	0.87	+1.1
95,357	+		DZA65_RS00385	0.87	-1.7
95,358	-		DZA65_RS00385	0.87	+0.7
95,361	+		DZA65_RS00385	0.88	+0.3
95,370	+		DZA65_RS00385	0.89	-0.7
95,376	-		DZA65_RS00385	0.89	+0.7
95,376	-		DZA65_RS00385	0.89	+0.3
95,386	-				+0.1
95,386	-				+1.2
95,456	+				-1.5
95,456	+				-0.7
95,457	-				+0.3
95,457	-				+1.1
95,469	+				+0.3
95,469	+				-1.2
95,470	-				+0.7
95,470	-				-0.5
95,470	-				-0.5
95,473	+				+0.5
95,473	+				-0.5
95,473	+				+0.3
95,473	+				+0.2
95,474	-				+0.5
95,474	-				-1.9
95,474	-				-0.5
95,494	+		DZA65_RS00390	0.10	+0.7
95,494	+		DZA65_RS00390	0.10	+0.1
95,494	+		DZA65_RS00390	0.10	-0.0
95,494	+		DZA65_RS00390	0.10	+0.9
95,494	+		DZA65_RS00390	0.10	+0.5
95,494	+		DZA65_RS00390	0.10	+0.3
95,494	+		DZA65_RS00390	0.10	-0.3
95,494	+		DZA65_RS00390	0.10	-0.9
95,494	+		DZA65_RS00390	0.10	+0.7
95,494	+		DZA65_RS00390	0.10	+0.8
95,494	+		DZA65_RS00390	0.10	+1.4
95,494	+		DZA65_RS00390	0.10	+1.9
95,494	+		DZA65_RS00390	0.10	+0.6
95,495	-		DZA65_RS00390	0.10	-0.3
95,495	-		DZA65_RS00390	0.10	-1.5
95,495	-		DZA65_RS00390	0.10	-0.4
95,495	-		DZA65_RS00390	0.10	+0.6
95,495	-		DZA65_RS00390	0.10	-1.9
95,495	-		DZA65_RS00390	0.10	-1.5
95,495	-		DZA65_RS00390	0.10	+0.1
95,495	-		DZA65_RS00390	0.10	+1.0
95,495	-		DZA65_RS00390	0.10	-0.6
95,495	-		DZA65_RS00390	0.10	+2.5
95,499	+		DZA65_RS00390	0.12	-2.3
95,500	-		DZA65_RS00390	0.12	-1.8
95,502	+		DZA65_RS00390	0.13	-0.2
95,503	-		DZA65_RS00390	0.13	-0.0
95,503	-		DZA65_RS00390	0.13	+1.1
95,635	+		DZA65_RS00390	0.58	-0.6
95,635	+		DZA65_RS00390	0.58	+0.3
95,635	+		DZA65_RS00390	0.58	-0.6
95,636	-		DZA65_RS00390	0.59	+1.4
95,636	-		DZA65_RS00390	0.59	+2.1
95,636	-		DZA65_RS00390	0.59	-0.5
95,757	+				+0.1
95,757	+				+0.7
95,757	+				+0.1
95,757	+				-0.6
95,757	+				+2.3
95,757	+				+0.0
95,757	+				+0.5
95,758	-				+1.1
95,758	-				-0.3
95,847	+		DZA65_RS00395	0.17	+1.4
95,847	+		DZA65_RS00395	0.17	+0.1
95,847	+		DZA65_RS00395	0.17	-0.9
95,847	+		DZA65_RS00395	0.17	-0.7
95,847	+		DZA65_RS00395	0.17	+1.2
95,847	+		DZA65_RS00395	0.17	+2.7
95,847	+		DZA65_RS00395	0.17	-1.0
95,847	+		DZA65_RS00395	0.17	-1.6
95,848	-		DZA65_RS00395	0.17	-0.6
95,848	-		DZA65_RS00395	0.17	-0.0
95,848	-		DZA65_RS00395	0.17	-0.1
95,848	-		DZA65_RS00395	0.17	-0.1
95,848	-		DZA65_RS00395	0.17	-0.2
95,848	-		DZA65_RS00395	0.17	+0.4
95,848	-		DZA65_RS00395	0.17	+3.9
95,963	+		DZA65_RS00395	0.36	-1.1
96,093	-		DZA65_RS00395	0.57	-2.2
96,110	+		DZA65_RS00395	0.60	+0.2
96,110	+		DZA65_RS00395	0.60	+1.1
96,111	-		DZA65_RS00395	0.60	-0.5
96,111	-		DZA65_RS00395	0.60	-0.4
96,165	+		DZA65_RS00395	0.69	-0.0
96,166	-		DZA65_RS00395	0.69	-1.3
96,166	-		DZA65_RS00395	0.69	+0.1
96,166	-		DZA65_RS00395	0.69	-0.3
96,166	-		DZA65_RS00395	0.69	-0.7
96,213	+		DZA65_RS00395	0.76	+0.1
96,213	+		DZA65_RS00395	0.76	-0.1
96,213	+		DZA65_RS00395	0.76	+0.7
96,230	+		DZA65_RS00395	0.79	-0.5
96,231	-		DZA65_RS00395	0.79	-0.5
96,231	-		DZA65_RS00395	0.79	+0.4
96,287	+		DZA65_RS00395	0.89	+3.8
96,298	-				+0.0
96,315	+				+1.1
96,315	+				+0.9
96,315	+				-0.3
96,315	+				+1.1
96,324	+				-0.1
96,325	-				+1.0
96,500	+				+0.1
96,501	-				-1.5
96,501	-				-0.5
96,585	-		DZA65_RS00400	0.15	-0.5
96,622	+		DZA65_RS00400	0.18	+0.4
96,622	+		DZA65_RS00400	0.18	-1.2
96,622	+		DZA65_RS00400	0.18	+0.3
96,623	-		DZA65_RS00400	0.18	-1.2
96,623	-		DZA65_RS00400	0.18	+0.3
96,623	-		DZA65_RS00400	0.18	+1.7