Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00030

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00025 and DZA65_RS00030 are separated by 193 nucleotidesDZA65_RS00030 and DZA65_RS00035 overlap by 4 nucleotides DZA65_RS00025: DZA65_RS00025 - MFS transporter, at 6,182 to 7,366 _RS00025 DZA65_RS00030: DZA65_RS00030 - 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ, at 7,560 to 8,312 _RS00030 DZA65_RS00035: DZA65_RS00035 - oligopeptidase A, at 8,309 to 10,351 _RS00035 Position (kb) 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.610 kb on + strand, within DZA65_RS00025at 6.703 kb on + strand, within DZA65_RS00025at 6.703 kb on + strand, within DZA65_RS00025at 6.703 kb on + strand, within DZA65_RS00025at 6.704 kb on - strand, within DZA65_RS00025at 6.704 kb on - strand, within DZA65_RS00025at 6.704 kb on - strandat 6.704 kb on - strand, within DZA65_RS00025at 6.704 kb on - strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.724 kb on + strand, within DZA65_RS00025at 6.725 kb on - strand, within DZA65_RS00025at 6.725 kb on - strand, within DZA65_RS00025at 6.725 kb on - strand, within DZA65_RS00025at 6.725 kb on - strand, within DZA65_RS00025at 6.757 kb on + strand, within DZA65_RS00025at 6.757 kb on + strand, within DZA65_RS00025at 6.757 kb on + strand, within DZA65_RS00025at 6.758 kb on - strand, within DZA65_RS00025at 6.758 kb on - strand, within DZA65_RS00025at 6.761 kb on + strand, within DZA65_RS00025at 6.762 kb on - strand, within DZA65_RS00025at 6.872 kb on + strand, within DZA65_RS00025at 6.872 kb on + strand, within DZA65_RS00025at 6.873 kb on - strand, within DZA65_RS00025at 6.873 kb on - strand, within DZA65_RS00025at 6.873 kb on - strand, within DZA65_RS00025at 6.958 kb on + strand, within DZA65_RS00025at 6.958 kb on + strand, within DZA65_RS00025at 6.959 kb on - strand, within DZA65_RS00025at 7.008 kb on - strand, within DZA65_RS00025at 7.017 kb on + strand, within DZA65_RS00025at 7.032 kb on + strand, within DZA65_RS00025at 7.032 kb on + strand, within DZA65_RS00025at 7.032 kb on + strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.033 kb on - strand, within DZA65_RS00025at 7.035 kb on - strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.083 kb on + strand, within DZA65_RS00025at 7.084 kb on - strand, within DZA65_RS00025at 7.084 kb on - strand, within DZA65_RS00025at 7.084 kb on - strand, within DZA65_RS00025at 7.090 kb on + strand, within DZA65_RS00025at 7.091 kb on - strand, within DZA65_RS00025at 7.140 kb on - strand, within DZA65_RS00025at 7.245 kb on + strand, within DZA65_RS00025at 7.245 kb on + strand, within DZA65_RS00025at 7.246 kb on - strand, within DZA65_RS00025at 7.246 kb on - strand, within DZA65_RS00025at 7.246 kb on - strand, within DZA65_RS00025at 7.246 kb on - strand, within DZA65_RS00025at 7.270 kb on + strandat 7.270 kb on + strandat 7.271 kb on - strandat 7.271 kb on - strandat 7.371 kb on - strandat 7.384 kb on - strandat 7.384 kb on - strandat 7.414 kb on + strandat 7.414 kb on + strandat 7.415 kb on - strandat 7.417 kb on + strandat 7.417 kb on + strandat 7.417 kb on + strandat 7.417 kb on + strandat 7.418 kb on - strandat 7.418 kb on - strandat 7.424 kb on - strandat 7.428 kb on + strandat 7.429 kb on - strandat 7.429 kb on - strandat 7.429 kb on - strandat 7.429 kb on - strandat 7.535 kb on + strandat 7.536 kb on - strandat 7.626 kb on + strandat 7.648 kb on + strand, within DZA65_RS00030at 7.807 kb on + strand, within DZA65_RS00030at 7.807 kb on + strand, within DZA65_RS00030at 7.808 kb on - strand, within DZA65_RS00030at 7.829 kb on + strand, within DZA65_RS00030at 7.830 kb on - strand, within DZA65_RS00030at 7.830 kb on - strand, within DZA65_RS00030at 7.830 kb on - strand, within DZA65_RS00030at 7.839 kb on + strand, within DZA65_RS00030at 7.863 kb on + strand, within DZA65_RS00030at 7.863 kb on + strand, within DZA65_RS00030at 7.863 kb on + strand, within DZA65_RS00030at 7.864 kb on - strand, within DZA65_RS00030at 7.864 kb on - strand, within DZA65_RS00030at 8.050 kb on + strand, within DZA65_RS00030at 8.050 kb on + strand, within DZA65_RS00030at 8.050 kb on + strand, within DZA65_RS00030at 8.051 kb on - strand, within DZA65_RS00030at 8.060 kb on + strand, within DZA65_RS00030at 8.063 kb on + strand, within DZA65_RS00030at 8.063 kb on + strand, within DZA65_RS00030at 8.063 kb on + strand, within DZA65_RS00030at 8.177 kb on + strand, within DZA65_RS00030at 8.325 kb on + strandat 8.325 kb on + strandat 8.325 kb on + strandat 8.326 kb on - strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.511 kb on + strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.517 kb on + strand, within DZA65_RS00035at 8.517 kb on + strand, within DZA65_RS00035at 8.517 kb on + strand, within DZA65_RS00035at 8.517 kb on + strand, within DZA65_RS00035at 8.517 kb on + strand, within DZA65_RS00035at 8.517 kb on + strand, within DZA65_RS00035at 8.517 kb on + strand, within DZA65_RS00035at 8.517 kb on + strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.518 kb on - strand, within DZA65_RS00035at 8.520 kb on + strand, within DZA65_RS00035at 8.521 kb on - strand, within DZA65_RS00035at 8.521 kb on - strand, within DZA65_RS00035at 8.521 kb on - strand, within DZA65_RS00035at 8.659 kb on - strand, within DZA65_RS00035at 8.727 kb on + strand, within DZA65_RS00035at 8.727 kb on + strand, within DZA65_RS00035at 8.728 kb on - strand, within DZA65_RS00035at 8.728 kb on - strand, within DZA65_RS00035at 8.839 kb on + strand, within DZA65_RS00035at 8.840 kb on - strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.920 kb on + strand, within DZA65_RS00035at 8.921 kb on - strand, within DZA65_RS00035at 8.921 kb on - strand, within DZA65_RS00035at 8.921 kb on - strand, within DZA65_RS00035at 8.921 kb on - strand, within DZA65_RS00035at 8.921 kb on - strand, within DZA65_RS00035at 8.921 kb on - strand, within DZA65_RS00035at 8.921 kb on - strand, within DZA65_RS00035at 8.921 kb on - strand, within DZA65_RS00035at 9.013 kb on + strand, within DZA65_RS00035at 9.013 kb on + strand, within DZA65_RS00035at 9.013 kb on + strand, within DZA65_RS00035at 9.014 kb on - strand, within DZA65_RS00035at 9.024 kb on + strand, within DZA65_RS00035at 9.025 kb on - strand, within DZA65_RS00035at 9.025 kb on - strand, within DZA65_RS00035at 9.117 kb on + strand, within DZA65_RS00035at 9.129 kb on + strand, within DZA65_RS00035at 9.130 kb on - strand, within DZA65_RS00035at 9.130 kb on - strand, within DZA65_RS00035at 9.130 kb on - strand, within DZA65_RS00035at 9.130 kb on - strand, within DZA65_RS00035at 9.140 kb on + strand, within DZA65_RS00035at 9.141 kb on - strand, within DZA65_RS00035at 9.161 kb on - strand, within DZA65_RS00035at 9.232 kb on - strand, within DZA65_RS00035at 9.232 kb on - strand, within DZA65_RS00035at 9.267 kb on - strand, within DZA65_RS00035at 9.285 kb on + strand, within DZA65_RS00035at 9.285 kb on + strand, within DZA65_RS00035at 9.286 kb on - strand, within DZA65_RS00035at 9.286 kb on - strand, within DZA65_RS00035at 9.293 kb on + strand, within DZA65_RS00035at 9.293 kb on + strand, within DZA65_RS00035at 9.293 kb on + strand, within DZA65_RS00035at 9.293 kb on + strand, within DZA65_RS00035at 9.294 kb on - strand, within DZA65_RS00035at 9.294 kb on - strand, within DZA65_RS00035at 9.294 kb on - strand, within DZA65_RS00035at 9.307 kb on + strand, within DZA65_RS00035at 9.308 kb on - strand, within DZA65_RS00035at 9.308 kb on - strand, within DZA65_RS00035

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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6,610 + DZA65_RS00025 0.36 -0.9
6,703 + DZA65_RS00025 0.44 +0.1
6,703 + DZA65_RS00025 0.44 +0.5
6,703 + DZA65_RS00025 0.44 +0.4
6,704 - DZA65_RS00025 0.44 +0.2
6,704 - DZA65_RS00025 0.44 +1.1
6,704 - +0.1
6,704 - DZA65_RS00025 0.44 -1.7
6,704 - DZA65_RS00025 0.44 -0.6
6,724 + DZA65_RS00025 0.46 -1.9
6,724 + DZA65_RS00025 0.46 -0.1
6,724 + DZA65_RS00025 0.46 +0.2
6,724 + DZA65_RS00025 0.46 -0.1
6,724 + DZA65_RS00025 0.46 -0.3
6,725 - DZA65_RS00025 0.46 +0.8
6,725 - DZA65_RS00025 0.46 +0.6
6,725 - DZA65_RS00025 0.46 -0.5
6,725 - DZA65_RS00025 0.46 -0.9
6,757 + DZA65_RS00025 0.49 +2.3
6,757 + DZA65_RS00025 0.49 -0.6
6,757 + DZA65_RS00025 0.49 +1.0
6,758 - DZA65_RS00025 0.49 -1.7
6,758 - DZA65_RS00025 0.49 -0.3
6,761 + DZA65_RS00025 0.49 +0.7
6,762 - DZA65_RS00025 0.49 -0.0
6,872 + DZA65_RS00025 0.58 +1.4
6,872 + DZA65_RS00025 0.58 -2.3
6,873 - DZA65_RS00025 0.58 +0.9
6,873 - DZA65_RS00025 0.58 -0.2
6,873 - DZA65_RS00025 0.58 +0.4
6,958 + DZA65_RS00025 0.65 -0.1
6,958 + DZA65_RS00025 0.65 +0.9
6,959 - DZA65_RS00025 0.66 -0.6
7,008 - DZA65_RS00025 0.70 -0.6
7,017 + DZA65_RS00025 0.70 +0.2
7,032 + DZA65_RS00025 0.72 -1.6
7,032 + DZA65_RS00025 0.72 -1.7
7,032 + DZA65_RS00025 0.72 +0.7
7,033 - DZA65_RS00025 0.72 -0.8
7,033 - DZA65_RS00025 0.72 +0.4
7,033 - DZA65_RS00025 0.72 -0.9
7,033 - DZA65_RS00025 0.72 +1.4
7,033 - DZA65_RS00025 0.72 -3.1
7,035 - DZA65_RS00025 0.72 +0.5
7,083 + DZA65_RS00025 0.76 +0.7
7,083 + DZA65_RS00025 0.76 +0.2
7,083 + DZA65_RS00025 0.76 +0.7
7,083 + DZA65_RS00025 0.76 -0.3
7,083 + DZA65_RS00025 0.76 +0.7
7,083 + DZA65_RS00025 0.76 -0.7
7,083 + DZA65_RS00025 0.76 -0.5
7,084 - DZA65_RS00025 0.76 +1.1
7,084 - DZA65_RS00025 0.76 +0.4
7,084 - DZA65_RS00025 0.76 -0.9
7,090 + DZA65_RS00025 0.77 -0.1
7,091 - DZA65_RS00025 0.77 +0.5
7,140 - DZA65_RS00025 0.81 -1.2
7,245 + DZA65_RS00025 0.90 -0.0
7,245 + DZA65_RS00025 0.90 -0.5
7,246 - DZA65_RS00025 0.90 -0.4
7,246 - DZA65_RS00025 0.90 +0.3
7,246 - DZA65_RS00025 0.90 -0.9
7,246 - DZA65_RS00025 0.90 -0.7
7,270 + -0.7
7,270 + +0.1
7,271 - -0.9
7,271 - -1.2
7,371 - -1.0
7,384 - -0.8
7,384 - -0.9
7,414 + +0.1
7,414 + -0.6
7,415 - -1.7
7,417 + -0.5
7,417 + -0.7
7,417 + +0.0
7,417 + +1.5
7,418 - +0.1
7,418 - -0.5
7,424 - -0.5
7,428 + -1.2
7,429 - +0.5
7,429 - -0.2
7,429 - -0.1
7,429 - -0.4
7,535 + +0.3
7,536 - -0.5
7,626 + +0.1
7,648 + DZA65_RS00030 0.12 -2.2
7,807 + DZA65_RS00030 0.33 -0.2
7,807 + DZA65_RS00030 0.33 +1.7
7,808 - DZA65_RS00030 0.33 +0.4
7,829 + DZA65_RS00030 0.36 -1.0
7,830 - DZA65_RS00030 0.36 -0.9
7,830 - DZA65_RS00030 0.36 +0.4
7,830 - DZA65_RS00030 0.36 -0.3
7,839 + DZA65_RS00030 0.37 +1.7
7,863 + DZA65_RS00030 0.40 -1.0
7,863 + DZA65_RS00030 0.40 -1.7
7,863 + DZA65_RS00030 0.40 -1.9
7,864 - DZA65_RS00030 0.40 +0.5
7,864 - DZA65_RS00030 0.40 -0.9
8,050 + DZA65_RS00030 0.65 -0.3
8,050 + DZA65_RS00030 0.65 -0.7
8,050 + DZA65_RS00030 0.65 -0.5
8,051 - DZA65_RS00030 0.65 -1.1
8,060 + DZA65_RS00030 0.66 +1.7
8,063 + DZA65_RS00030 0.67 +0.1
8,063 + DZA65_RS00030 0.67 -1.9
8,063 + DZA65_RS00030 0.67 +0.4
8,177 + DZA65_RS00030 0.82 +0.7
8,325 + +0.4
8,325 + +0.9
8,325 + -0.2
8,326 - +2.6
8,511 + +0.2
8,511 + -1.0
8,511 + -0.8
8,511 + -0.8
8,511 + -1.6
8,511 + -0.5
8,511 + +2.1
8,511 + -2.3
8,511 + -0.5
8,511 + +1.5
8,511 + +0.1
8,511 + -1.5
8,511 + -1.2
8,511 + +0.6
8,511 + -0.7
8,511 + -0.5
8,511 + +0.7
8,511 + -0.7
8,511 + -2.7
8,511 + -0.8
8,511 + -0.4
8,512 - -0.4
8,512 - +1.7
8,512 - +0.2
8,512 - -1.5
8,512 - -0.4
8,512 - -0.1
8,512 - +0.2
8,512 - -0.7
8,512 - -0.5
8,512 - +0.1
8,512 - -0.7
8,512 - -0.8
8,512 - -1.7
8,512 - +0.0
8,512 - +1.4
8,512 - +0.3
8,512 - -0.8
8,517 + DZA65_RS00035 0.10 +0.7
8,517 + DZA65_RS00035 0.10 -0.5
8,517 + DZA65_RS00035 0.10 -1.9
8,517 + DZA65_RS00035 0.10 -0.8
8,517 + DZA65_RS00035 0.10 +0.5
8,517 + DZA65_RS00035 0.10 +0.7
8,517 + DZA65_RS00035 0.10 -1.0
8,517 + DZA65_RS00035 0.10 -1.9
8,518 - DZA65_RS00035 0.10 +0.0
8,518 - DZA65_RS00035 0.10 -0.9
8,518 - DZA65_RS00035 0.10 +1.7
8,518 - DZA65_RS00035 0.10 +1.1
8,518 - DZA65_RS00035 0.10 -0.7
8,518 - DZA65_RS00035 0.10 -0.8
8,518 - DZA65_RS00035 0.10 -1.6
8,518 - DZA65_RS00035 0.10 +0.7
8,518 - DZA65_RS00035 0.10 -1.5
8,520 + DZA65_RS00035 0.10 +1.1
8,521 - DZA65_RS00035 0.10 -1.2
8,521 - DZA65_RS00035 0.10 -0.1
8,521 - DZA65_RS00035 0.10 +2.1
8,659 - DZA65_RS00035 0.17 +0.0
8,727 + DZA65_RS00035 0.20 +0.5
8,727 + DZA65_RS00035 0.20 -0.9
8,728 - DZA65_RS00035 0.21 +0.8
8,728 - DZA65_RS00035 0.21 -2.2
8,839 + DZA65_RS00035 0.26 -1.2
8,840 - DZA65_RS00035 0.26 -0.5
8,920 + DZA65_RS00035 0.30 +2.3
8,920 + DZA65_RS00035 0.30 -1.2
8,920 + DZA65_RS00035 0.30 -1.9
8,920 + DZA65_RS00035 0.30 -0.9
8,920 + DZA65_RS00035 0.30 -0.9
8,920 + DZA65_RS00035 0.30 -0.8
8,920 + DZA65_RS00035 0.30 +0.1
8,920 + DZA65_RS00035 0.30 -0.5
8,920 + DZA65_RS00035 0.30 -1.2
8,920 + DZA65_RS00035 0.30 -0.2
8,920 + DZA65_RS00035 0.30 +1.6
8,921 - DZA65_RS00035 0.30 -0.7
8,921 - DZA65_RS00035 0.30 -2.1
8,921 - DZA65_RS00035 0.30 +0.5
8,921 - DZA65_RS00035 0.30 -0.5
8,921 - DZA65_RS00035 0.30 -1.1
8,921 - DZA65_RS00035 0.30 -1.2
8,921 - DZA65_RS00035 0.30 +0.5
8,921 - DZA65_RS00035 0.30 -0.9
9,013 + DZA65_RS00035 0.34 -1.1
9,013 + DZA65_RS00035 0.34 -0.6
9,013 + DZA65_RS00035 0.34 +1.7
9,014 - DZA65_RS00035 0.35 +0.4
9,024 + DZA65_RS00035 0.35 -0.9
9,025 - DZA65_RS00035 0.35 +0.9
9,025 - DZA65_RS00035 0.35 -0.9
9,117 + DZA65_RS00035 0.40 +0.9
9,129 + DZA65_RS00035 0.40 +2.3
9,130 - DZA65_RS00035 0.40 -0.6
9,130 - DZA65_RS00035 0.40 -0.3
9,130 - DZA65_RS00035 0.40 +0.5
9,130 - DZA65_RS00035 0.40 +0.3
9,140 + DZA65_RS00035 0.41 +0.8
9,141 - DZA65_RS00035 0.41 -0.9
9,161 - DZA65_RS00035 0.42 -0.3
9,232 - DZA65_RS00035 0.45 -0.7
9,232 - DZA65_RS00035 0.45 -1.2
9,267 - DZA65_RS00035 0.47 +0.1
9,285 + DZA65_RS00035 0.48 +0.5
9,285 + DZA65_RS00035 0.48 +0.3
9,286 - DZA65_RS00035 0.48 +1.4
9,286 - DZA65_RS00035 0.48 +1.1
9,293 + DZA65_RS00035 0.48 -0.5
9,293 + DZA65_RS00035 0.48 -0.1
9,293 + DZA65_RS00035 0.48 -0.2
9,293 + DZA65_RS00035 0.48 -1.7
9,294 - DZA65_RS00035 0.48 -0.8
9,294 - DZA65_RS00035 0.48 -0.5
9,294 - DZA65_RS00035 0.48 +0.1
9,307 + DZA65_RS00035 0.49 +0.5
9,308 - DZA65_RS00035 0.49 -2.4
9,308 - DZA65_RS00035 0.49 +0.3

Or see this region's nucleotide sequence