Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22495

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,863,823	+		DZA65_RS22490	0.63	-0.3
4,863,823	+		DZA65_RS22490	0.63	-0.5
4,863,823	+		DZA65_RS22490	0.63	-1.0
4,863,823	+		DZA65_RS22490	0.63	+0.5
4,863,823	+		DZA65_RS22490	0.63	+0.7
4,863,824	-		DZA65_RS22490	0.63	-0.9
4,863,824	-		DZA65_RS22490	0.63	-0.6
4,863,824	-		DZA65_RS22490	0.63	+0.5
4,863,824	-		DZA65_RS22490	0.63	-0.9
4,863,830	+		DZA65_RS22490	0.63	-1.0
4,863,830	+		DZA65_RS22490	0.63	+2.8
4,863,830	+		DZA65_RS22490	0.63	+0.6
4,863,830	+		DZA65_RS22490	0.63	+0.5
4,863,830	+		DZA65_RS22490	0.63	-1.0
4,863,831	-		DZA65_RS22490	0.63	+0.2
4,863,831	-		DZA65_RS22490	0.63	+0.2
4,863,831	-		DZA65_RS22490	0.63	-1.8
4,863,908	+		DZA65_RS22490	0.67	-1.9
4,863,909	-		DZA65_RS22490	0.67	+0.4
4,863,921	-		DZA65_RS22490	0.67	-1.1
4,864,024	+		DZA65_RS22490	0.72	+2.7
4,864,025	-		DZA65_RS22490	0.72	+0.7
4,864,147	-		DZA65_RS22490	0.77	-0.5
4,864,147	-		DZA65_RS22490	0.77	+1.5
4,864,212	+		DZA65_RS22490	0.80	-0.5
4,864,212	+		DZA65_RS22490	0.80	-1.4
4,864,212	+		DZA65_RS22490	0.80	+0.4
4,864,212	+		DZA65_RS22490	0.80	+0.1
4,864,213	-		DZA65_RS22490	0.80	+0.9
4,864,229	-		DZA65_RS22490	0.80	-0.3
4,864,229	-		DZA65_RS22490	0.80	-0.3
4,864,248	+		DZA65_RS22490	0.81	-0.7
4,864,248	+		DZA65_RS22490	0.81	-1.4
4,864,248	+		DZA65_RS22490	0.81	-1.7
4,864,248	+		DZA65_RS22490	0.81	+0.8
4,864,249	-		DZA65_RS22490	0.81	+1.9
4,864,249	-		DZA65_RS22490	0.81	-0.5
4,864,249	-		DZA65_RS22490	0.81	-0.5
4,864,264	+		DZA65_RS22490	0.82	-1.3
4,864,264	+		DZA65_RS22490	0.82	-0.6
4,864,264	+		DZA65_RS22490	0.82	-0.0
4,864,265	-		DZA65_RS22490	0.82	+0.1
4,864,265	-		DZA65_RS22490	0.82	-1.4
4,864,316	+		DZA65_RS22490	0.84	-0.1
4,864,316	+		DZA65_RS22490	0.84	-0.5
4,864,316	+		DZA65_RS22490	0.84	+1.5
4,864,316	+		DZA65_RS22490	0.84	-1.9
4,864,316	+		DZA65_RS22490	0.84	-1.0
4,864,316	+		DZA65_RS22490	0.84	+0.3
4,864,316	+		DZA65_RS22490	0.84	-1.2
4,864,316	+		DZA65_RS22490	0.84	-0.3
4,864,316	+		DZA65_RS22490	0.84	+0.6
4,864,316	+		DZA65_RS22490	0.84	-0.7
4,864,316	+		DZA65_RS22490	0.84	-0.4
4,864,316	+		DZA65_RS22490	0.84	-0.1
4,864,316	+		DZA65_RS22490	0.84	-0.9
4,864,316	+		DZA65_RS22490	0.84	-0.7
4,864,316	+		DZA65_RS22490	0.84	-0.2
4,864,316	+		DZA65_RS22490	0.84	+1.8
4,864,317	-		DZA65_RS22490	0.84	+0.5
4,864,317	-		DZA65_RS22490	0.84	+2.7
4,864,317	-		DZA65_RS22490	0.84	-0.1
4,864,317	-		DZA65_RS22490	0.84	-0.5
4,864,317	-		DZA65_RS22490	0.84	+0.9
4,864,317	-		DZA65_RS22490	0.84	+2.1
4,864,317	-		DZA65_RS22490	0.84	+1.5
4,864,317	-		DZA65_RS22490	0.84	-1.3
4,864,317	-		DZA65_RS22490	0.84	+0.1
4,864,317	-		DZA65_RS22490	0.84	+0.1
4,864,317	-		DZA65_RS22490	0.84	-2.5
4,864,317	-		DZA65_RS22490	0.84	+0.5
4,864,317	-		DZA65_RS22490	0.84	-0.6
4,864,317	-		DZA65_RS22490	0.84	-1.5
4,864,317	-		DZA65_RS22490	0.84	+0.5
4,864,472	+				-0.9
4,864,472	+				-1.1
4,864,472	+				+0.7
4,864,472	+				-3.7
4,864,472	+				+0.1
4,864,473	-				-1.4
4,864,473	-				+1.5
4,864,473	-				+0.6
4,864,473	-				+0.5
4,864,473	-				+1.7
4,864,543	+				+0.6
4,864,543	+				-1.0
4,864,543	+				+1.5
4,864,543	+				+0.8
4,864,543	+				+1.5
4,864,543	+				-0.7
4,864,544	-				-0.0
4,864,544	-				-0.2
4,864,544	-				+0.4
4,864,582	+				+1.7
4,864,582	+				+0.6
4,864,582	+				+0.4
4,864,582	+				+0.1
4,864,582	+				+0.5
4,864,583	-				+0.1
4,864,583	-				+0.1
4,864,583	-				-1.2
4,864,583	-				-1.5
4,864,780	-		DZA65_RS22495	0.17	+0.6
4,864,780	-		DZA65_RS22495	0.17	-0.5
4,864,829	+		DZA65_RS22495	0.25	-0.2
4,864,858	+		DZA65_RS22495	0.30	-1.3
4,864,858	+		DZA65_RS22495	0.30	-0.3
4,864,858	+		DZA65_RS22495	0.30	-2.0
4,864,858	+		DZA65_RS22495	0.30	+0.5
4,864,859	-		DZA65_RS22495	0.31	-0.9
4,864,859	-		DZA65_RS22495	0.31	-0.9
4,864,892	+		DZA65_RS22495	0.36	+0.8
4,864,893	-		DZA65_RS22495	0.36	+3.9
4,864,893	-		DZA65_RS22495	0.36	+2.0
4,864,893	-		DZA65_RS22495	0.36	-1.2
4,864,963	+		DZA65_RS22495	0.49	+1.0
4,864,963	+		DZA65_RS22495	0.49	-2.2
4,864,963	+		DZA65_RS22495	0.49	+2.1
4,864,963	+		DZA65_RS22495	0.49	-0.5
4,864,963	+		DZA65_RS22495	0.49	+1.1
4,864,963	+		DZA65_RS22495	0.49	-0.3
4,864,963	+		DZA65_RS22495	0.49	+0.7
4,864,963	+		DZA65_RS22495	0.49	+0.2
4,864,964	-		DZA65_RS22495	0.49	-2.1
4,864,964	-		DZA65_RS22495	0.49	+0.6
4,864,964	-		DZA65_RS22495	0.49	-0.7
4,864,964	-		DZA65_RS22495	0.49	-1.9
4,864,979	+		DZA65_RS22495	0.51	-0.5
4,864,979	+		DZA65_RS22495	0.51	-0.4
4,864,979	+		DZA65_RS22495	0.51	+1.4
4,864,979	+		DZA65_RS22495	0.51	+0.4
4,864,979	+		DZA65_RS22495	0.51	-0.3
4,864,979	+		DZA65_RS22495	0.51	-0.9
4,864,979	+		DZA65_RS22495	0.51	+1.0
4,864,979	+		DZA65_RS22495	0.51	+0.1
4,864,979	+		DZA65_RS22495	0.51	-0.5
4,864,979	+		DZA65_RS22495	0.51	+3.1
4,864,979	+		DZA65_RS22495	0.51	+2.1
4,864,980	-		DZA65_RS22495	0.52	+0.3
4,864,980	-		DZA65_RS22495	0.52	+1.3
4,864,980	-		DZA65_RS22495	0.52	+0.6
4,864,980	-		DZA65_RS22495	0.52	-0.3
4,864,980	-		DZA65_RS22495	0.52	-1.9
4,864,980	-		DZA65_RS22495	0.52	+0.1
4,864,980	-		DZA65_RS22495	0.52	+0.6
4,864,983	+		DZA65_RS22495	0.52	+1.1
4,864,983	+		DZA65_RS22495	0.52	+1.4
4,864,983	+		DZA65_RS22495	0.52	-1.7
4,864,983	+		DZA65_RS22495	0.52	-0.5
4,864,983	+		DZA65_RS22495	0.52	+1.7
4,864,984	-		DZA65_RS22495	0.52	+0.9
4,864,984	-		DZA65_RS22495	0.52	+1.5
4,865,177	+		DZA65_RS22495	0.86	-0.9
4,865,178	+		DZA65_RS22495	0.86	+0.4
4,865,178	+		DZA65_RS22495	0.86	-1.1
4,865,179	-		DZA65_RS22495	0.86	+0.6
4,865,179	-		DZA65_RS22495	0.86	+0.1
4,865,179	-		DZA65_RS22495	0.86	+1.4
4,865,179	-		DZA65_RS22495	0.86	+0.0
4,865,179	-		DZA65_RS22495	0.86	+1.1
4,865,179	-		DZA65_RS22495	0.86	+1.5
4,865,181	+		DZA65_RS22495	0.87	-1.2
4,865,181	+		DZA65_RS22495	0.87	+1.5
4,865,181	+		DZA65_RS22495	0.87	-1.5
4,865,181	+		DZA65_RS22495	0.87	+1.4
4,865,181	+		DZA65_RS22495	0.87	-0.2
4,865,181	+		DZA65_RS22495	0.87	+0.3
4,865,181	+		DZA65_RS22495	0.87	+0.7
4,865,181	+		DZA65_RS22495	0.87	+0.3
4,865,181	+		DZA65_RS22495	0.87	+0.3
4,865,181	+		DZA65_RS22495	0.87	+1.1
4,865,181	+		DZA65_RS22495	0.87	+0.8
4,865,181	+		DZA65_RS22495	0.87	+0.2
4,865,182	-		DZA65_RS22495	0.87	-0.2
4,865,242	+				-0.9
4,865,242	+				-1.7
4,865,243	-				-1.4
4,865,243	-				+0.8
4,865,243	-				-0.9
4,865,243	-				-1.7
4,865,243	-				+0.5
4,865,254	+				+0.8
4,865,255	-				-1.0
4,865,264	+				+0.3
4,865,264	+				+2.5
4,865,264	+				-1.5
4,865,264	+				-0.7
4,865,264	+				-0.9
4,865,264	+				+0.5
4,865,264	+				+0.4
4,865,264	+				+0.1
4,865,264	+				+0.1
4,865,264	+				+0.4
4,865,264	+				-1.0
4,865,264	+				+1.5
4,865,265	-				-0.1
4,865,265	-				+0.4
4,865,265	-				+0.5
4,865,265	-				-1.9
4,865,265	-				-0.7
4,865,265	-				+0.5
4,865,265	-				-0.5
4,865,265	-				-0.6
4,865,265	-				+0.7
4,865,265	-				+0.1
4,865,265	-				+1.7
4,865,265	-				-1.5
4,865,265	-				+1.4
4,865,265	-				+1.6
4,865,265	-				-1.9
4,865,265	-				+1.1
4,865,265	-				-0.7
4,865,266	+				-0.1
4,865,266	+				+0.3
4,865,266	+				-0.3
4,865,267	-				+0.4
4,865,383	+		DZA65_RS22500	0.11	-1.0
4,865,384	-		DZA65_RS22500	0.11	+0.5
4,865,384	-		DZA65_RS22500	0.11	+0.3
4,865,384	-		DZA65_RS22500	0.11	-0.1
4,865,384	-		DZA65_RS22500	0.11	-0.1
4,865,384	-		DZA65_RS22500	0.11	-0.2
4,865,406	+		DZA65_RS22500	0.13	-0.5
4,865,406	+		DZA65_RS22500	0.13	-2.5
4,865,406	+		DZA65_RS22500	0.13	-0.7
4,865,406	+		DZA65_RS22500	0.13	+1.4
4,865,406	+		DZA65_RS22500	0.13	+0.5
4,865,407	-		DZA65_RS22500	0.13	-4.1
4,865,407	-		DZA65_RS22500	0.13	-0.5
4,865,407	-		DZA65_RS22500	0.13	-0.5
4,865,407	-		DZA65_RS22500	0.13	-1.7
4,865,549	-		DZA65_RS22500	0.25	+0.5
4,865,615	+		DZA65_RS22500	0.31	-0.3
4,865,615	+		DZA65_RS22500	0.31	-0.4
4,865,615	+		DZA65_RS22500	0.31	+0.5
4,865,615	+		DZA65_RS22500	0.31	-1.0
4,865,616	-		DZA65_RS22500	0.31	-2.2
4,865,616	-		DZA65_RS22500	0.31	-0.3
4,865,616	-		DZA65_RS22500	0.31	+0.5
4,865,616	-		DZA65_RS22500	0.31	-1.3
4,865,621	+		DZA65_RS22500	0.31	+1.7
4,865,622	-		DZA65_RS22500	0.31	-1.5
4,865,666	+		DZA65_RS22500	0.35	-0.5
4,865,666	+		DZA65_RS22500	0.35	+0.1
4,865,667	-		DZA65_RS22500	0.35	-0.7
4,865,677	-		DZA65_RS22500	0.36	-0.0
4,865,690	+		DZA65_RS22500	0.37	-1.0
4,865,690	+		DZA65_RS22500	0.37	-1.2
4,865,690	+		DZA65_RS22500	0.37	-0.5
4,865,690	+		DZA65_RS22500	0.37	+0.4
4,865,690	+		DZA65_RS22500	0.37	+0.9
4,865,690	+		DZA65_RS22500	0.37	-0.5
4,865,690	+		DZA65_RS22500	0.37	-1.7
4,865,690	+		DZA65_RS22500	0.37	-0.3
4,865,690	+		DZA65_RS22500	0.37	+0.4
4,865,690	+		DZA65_RS22500	0.37	+0.3
4,865,691	-		DZA65_RS22500	0.37	-1.7
4,865,691	-		DZA65_RS22500	0.37	+0.7
4,865,691	-		DZA65_RS22500	0.37	+0.1
4,865,691	-		DZA65_RS22500	0.37	-0.6
4,865,691	-		DZA65_RS22500	0.37	-0.5
4,865,691	-		DZA65_RS22500	0.37	+1.0
4,865,692	+		DZA65_RS22500	0.37	-0.0
4,865,692	+		DZA65_RS22500	0.37	+0.4
4,865,693	-		DZA65_RS22500	0.38	-1.5
4,865,693	-		DZA65_RS22500	0.38	+0.3
4,865,693	-		DZA65_RS22500	0.38	-2.2
4,865,693	-		DZA65_RS22500	0.38	-0.3
4,865,794	+		DZA65_RS22500	0.46	-0.8
4,865,806	+		DZA65_RS22500	0.47	+0.4
4,865,806	+		DZA65_RS22500	0.47	+1.1
4,865,806	+		DZA65_RS22500	0.47	+1.0
4,865,807	-		DZA65_RS22500	0.47	+2.1
4,865,807	-		DZA65_RS22500	0.47	-0.1
4,865,884	+		DZA65_RS22500	0.54	-1.7
4,865,885	-		DZA65_RS22500	0.54	+2.5
4,865,885	-		DZA65_RS22500	0.54	+1.1
4,865,885	-		DZA65_RS22500	0.54	+1.4
4,866,022	+		DZA65_RS22500	0.66	+1.3
4,866,022	+		DZA65_RS22500	0.66	-1.5
4,866,022	+		DZA65_RS22500	0.66	+1.6
4,866,022	+		DZA65_RS22500	0.66	-0.0
4,866,023	-		DZA65_RS22500	0.66	-0.9
4,866,023	-		DZA65_RS22500	0.66	-0.6
4,866,023	-		DZA65_RS22500	0.66	+1.9
4,866,025	+		DZA65_RS22500	0.66	+0.3
4,866,025	+		DZA65_RS22500	0.66	-1.5
4,866,025	+		DZA65_RS22500	0.66	-0.5
4,866,025	+		DZA65_RS22500	0.66	+0.8
4,866,026	-		DZA65_RS22500	0.66	-0.3
4,866,026	-		DZA65_RS22500	0.66	+0.0
4,866,071	+		DZA65_RS22500	0.70	+0.7
4,866,071	+		DZA65_RS22500	0.70	-0.5
4,866,071	+		DZA65_RS22500	0.70	-2.0
4,866,071	+		DZA65_RS22500	0.70	-0.2
4,866,071	+		DZA65_RS22500	0.70	-2.3
4,866,071	+		DZA65_RS22500	0.70	+0.1
4,866,071	+		DZA65_RS22500	0.70	-0.0
4,866,071	+		DZA65_RS22500	0.70	+0.2
4,866,071	+		DZA65_RS22500	0.70	-0.9
4,866,072	-		DZA65_RS22500	0.70	-0.3
4,866,072	-		DZA65_RS22500	0.70	+0.3
4,866,072	-		DZA65_RS22500	0.70	-1.7
4,866,072	-		DZA65_RS22500	0.70	-2.6
4,866,072	-		DZA65_RS22500	0.70	-0.3
4,866,072	-		DZA65_RS22500	0.70	-0.4
4,866,072	-		DZA65_RS22500	0.70	+1.5
4,866,072	-		DZA65_RS22500	0.70	+0.7
4,866,073	+		DZA65_RS22500	0.70	+0.1
4,866,073	+		DZA65_RS22500	0.70	+1.6
4,866,073	+		DZA65_RS22500	0.70	-1.1
4,866,073	+		DZA65_RS22500	0.70	-0.5
4,866,073	+		DZA65_RS22500	0.70	-0.2
4,866,073	+		DZA65_RS22500	0.70	+0.7
4,866,074	-		DZA65_RS22500	0.70	+0.1
4,866,074	-				-0.9
4,866,074	-		DZA65_RS22500	0.70	-0.9
4,866,074	-		DZA65_RS22500	0.70	-2.7
4,866,074	-		DZA65_RS22500	0.70	-0.9
4,866,074	-		DZA65_RS22500	0.70	-1.2
4,866,074	-		DZA65_RS22500	0.70	-0.9
4,866,074	-		DZA65_RS22500	0.70	+0.8
4,866,074	-		DZA65_RS22500	0.70	+0.4
4,866,074	-		DZA65_RS22500	0.70	+1.2
4,866,074	-		DZA65_RS22500	0.70	+0.0
4,866,074	-		DZA65_RS22500	0.70	-2.6
4,866,103	+		DZA65_RS22500	0.73	-1.2
4,866,103	+		DZA65_RS22500	0.73	+0.5
4,866,103	+		DZA65_RS22500	0.73	+0.3
4,866,104	-		DZA65_RS22500	0.73	-0.1
4,866,104	-		DZA65_RS22500	0.73	+0.9
4,866,104	-		DZA65_RS22500	0.73	-0.0
4,866,170	-		DZA65_RS22500	0.79	-0.6
4,866,187	+		DZA65_RS22500	0.80	+0.5
4,866,187	+		DZA65_RS22500	0.80	+0.5
4,866,187	+		DZA65_RS22500	0.80	+1.1
4,866,188	-		DZA65_RS22500	0.80	+0.4
4,866,222	+		DZA65_RS22500	0.83	-0.3
4,866,223	-		DZA65_RS22500	0.83	-1.0