Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22265

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,815,115	-		DZA65_RS22255	0.59	+0.3
4,815,131	-		DZA65_RS22255	0.62	-0.2
4,815,164	+		DZA65_RS22255	0.67	+0.3
4,815,164	+		DZA65_RS22255	0.67	-1.7
4,815,165	-		DZA65_RS22255	0.68	-1.4
4,815,165	-		DZA65_RS22255	0.68	-0.1
4,815,165	-		DZA65_RS22255	0.68	+2.6
4,815,167	+		DZA65_RS22255	0.68	-2.3
4,815,205	+		DZA65_RS22255	0.74	-0.5
4,815,205	+		DZA65_RS22255	0.74	-0.4
4,815,205	+		DZA65_RS22255	0.74	-1.0
4,815,205	+		DZA65_RS22255	0.74	+0.4
4,815,205	+		DZA65_RS22255	0.74	-0.1
4,815,205	+		DZA65_RS22255	0.74	+0.3
4,815,205	+		DZA65_RS22255	0.74	+0.5
4,815,206	-		DZA65_RS22255	0.75	-1.7
4,815,206	-		DZA65_RS22255	0.75	+0.4
4,815,206	-		DZA65_RS22255	0.75	-0.1
4,815,206	-				+1.1
4,815,251	+		DZA65_RS22255	0.82	-3.3
4,815,251	+		DZA65_RS22255	0.82	-0.5
4,815,251	+		DZA65_RS22255	0.82	-0.5
4,815,252	-		DZA65_RS22255	0.83	+1.9
4,815,252	-		DZA65_RS22255	0.83	+0.7
4,815,252	-		DZA65_RS22255	0.83	+1.0
4,815,252	-		DZA65_RS22255	0.83	-0.2
4,815,252	-		DZA65_RS22255	0.83	-1.8
4,815,252	-		DZA65_RS22255	0.83	+0.3
4,815,252	-		DZA65_RS22255	0.83	-0.8
4,815,287	+		DZA65_RS22255	0.89	-2.3
4,815,297	+				+0.5
4,815,298	-				+0.1
4,815,306	+				+1.9
4,815,307	-				-0.2
4,815,307	-				+0.5
4,815,352	+				-0.5
4,815,352	+				-0.5
4,815,352	+				-1.5
4,815,352	+				-0.6
4,815,353	-				+0.5
4,815,353	-				-0.1
4,815,353	-				+0.6
4,815,353	-				+3.5
4,815,353	-				+1.4
4,815,353	-				+0.1
4,815,353	-				+0.7
4,815,353	-				-0.0
4,815,354	+				-2.0
4,815,354	+				+0.5
4,815,355	-				-0.6
4,815,355	-				-0.9
4,815,355	-				-0.9
4,815,402	+		DZA65_RS22260	0.11	-2.7
4,815,403	-		DZA65_RS22260	0.11	-0.1
4,815,451	+		DZA65_RS22260	0.20	+0.1
4,815,463	+		DZA65_RS22260	0.23	-0.5
4,815,463	+		DZA65_RS22260	0.23	+0.2
4,815,463	+		DZA65_RS22260	0.23	-1.2
4,815,463	+		DZA65_RS22260	0.23	+1.0
4,815,464	-		DZA65_RS22260	0.23	+1.0
4,815,464	-		DZA65_RS22260	0.23	+1.0
4,815,464	-		DZA65_RS22260	0.23	-0.9
4,815,464	-		DZA65_RS22260	0.23	-0.2
4,815,464	-		DZA65_RS22260	0.23	-0.7
4,815,464	-		DZA65_RS22260	0.23	+0.1
4,815,464	-		DZA65_RS22260	0.23	+0.9
4,815,464	-		DZA65_RS22260	0.23	+0.6
4,815,476	-		DZA65_RS22260	0.25	+0.9
4,815,506	+		DZA65_RS22260	0.31	-1.0
4,815,506	+		DZA65_RS22260	0.31	+0.5
4,815,506	+		DZA65_RS22260	0.31	-0.5
4,815,506	+		DZA65_RS22260	0.31	+0.3
4,815,506	+		DZA65_RS22260	0.31	-0.4
4,815,506	+		DZA65_RS22260	0.31	+1.6
4,815,506	+		DZA65_RS22260	0.31	-2.3
4,815,506	+		DZA65_RS22260	0.31	+1.1
4,815,506	+		DZA65_RS22260	0.31	-0.5
4,815,507	-		DZA65_RS22260	0.31	-1.3
4,815,507	-		DZA65_RS22260	0.31	-0.9
4,815,507	-		DZA65_RS22260	0.31	-1.7
4,815,507	-		DZA65_RS22260	0.31	+1.7
4,815,507	-		DZA65_RS22260	0.31	+0.3
4,815,507	-		DZA65_RS22260	0.31	+0.1
4,815,507	-		DZA65_RS22260	0.31	+0.1
4,815,507	-		DZA65_RS22260	0.31	+1.1
4,815,550	+		DZA65_RS22260	0.39	+0.4
4,815,550	+		DZA65_RS22260	0.39	-2.5
4,815,550	+		DZA65_RS22260	0.39	-0.2
4,815,550	+		DZA65_RS22260	0.39	-0.7
4,815,553	+		DZA65_RS22260	0.40	-0.9
4,815,553	+		DZA65_RS22260	0.40	-0.2
4,815,553	+		DZA65_RS22260	0.40	+0.5
4,815,553	+		DZA65_RS22260	0.40	+0.3
4,815,553	+		DZA65_RS22260	0.40	-0.6
4,815,553	+		DZA65_RS22260	0.40	+0.3
4,815,553	+		DZA65_RS22260	0.40	+0.3
4,815,553	+		DZA65_RS22260	0.40	-0.7
4,815,553	+		DZA65_RS22260	0.40	-2.0
4,815,554	-		DZA65_RS22260	0.40	+1.7
4,815,554	-		DZA65_RS22260	0.40	+0.5
4,815,554	-		DZA65_RS22260	0.40	+0.2
4,815,605	+		DZA65_RS22260	0.49	+2.7
4,815,605	+		DZA65_RS22260	0.49	+0.2
4,815,605	+		DZA65_RS22260	0.49	+0.6
4,815,606	-		DZA65_RS22260	0.50	-1.5
4,815,606	-		DZA65_RS22260	0.50	+1.2
4,815,606	-		DZA65_RS22260	0.50	+0.3
4,815,654	+		DZA65_RS22260	0.59	-1.2
4,815,654	+		DZA65_RS22260	0.59	+1.1
4,815,655	-		DZA65_RS22260	0.59	-0.7
4,815,655	-		DZA65_RS22260	0.59	-2.0
4,815,655	-		DZA65_RS22260	0.59	-0.4
4,815,655	-		DZA65_RS22260	0.59	+1.1
4,815,736	+		DZA65_RS22260	0.74	-0.2
4,815,826	+				+0.7
4,815,877	+				-1.9
4,815,877	+				+0.8
4,815,886	+				-1.3
4,815,886	+				-2.3
4,815,886	+				+0.4
4,815,887	-				-0.9
4,815,887	-				+0.6
4,815,889	+				+0.4
4,815,889	+				+1.6
4,815,889	+				+0.5
4,815,889	+				-0.6
4,815,889	+				+0.5
4,815,889	+				-0.5
4,815,889	+				-0.5
4,815,889	+				-0.9
4,815,889	+				+1.4
4,815,889	+				-1.5
4,815,889	+				+0.1
4,815,889	+				+0.9
4,815,889	+				+1.1
4,815,889	+				-0.3
4,815,890	-				+0.1
4,815,890	-				+0.5
4,815,890	-				+0.2
4,815,890	-				-2.5
4,815,890	-				-0.5
4,815,890	-				-0.6
4,815,890	-				-1.9
4,815,890	-				+0.4
4,815,890	-				+1.7
4,815,890	-				+0.1
4,815,890	-				-0.5
4,815,890	-				+3.7
4,815,890	-				+1.5
4,815,890	-				+0.0
4,815,890	-				+0.8
4,815,890	-				-0.0
4,815,892	+				-0.5
4,815,892	+				-2.5
4,815,893	-				-0.9
4,815,893	-				+0.1
4,815,893	-				+0.5
4,815,893	-				+1.9
4,815,893	-				+1.3
4,815,893	-				-0.1
4,815,893	-				-0.9
4,815,893	-				+1.6
4,815,893	-				+1.2
4,815,893	-				+1.0
4,815,893	-				+0.4
4,815,893	-				-0.4
4,815,920	-				-1.4
4,816,570	-				-0.2