Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22115

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,780,169	-				+0.2
4,780,169	-				+0.5
4,780,169	-				-0.7
4,780,252	+				+0.5
4,780,253	-				-0.5
4,780,265	+				-1.2
4,780,265	+				-0.9
4,780,265	+				+0.7
4,780,265	+				-0.5
4,780,265	+				-1.8
4,780,266	-				-1.2
4,780,266	-				-1.2
4,780,266	-				-0.0
4,780,266	-				+0.8
4,780,266	-				-0.7
4,780,266	-				-0.9
4,780,268	+				-1.0
4,780,268	+				-1.5
4,780,268	+				+0.3
4,780,268	+				-0.3
4,780,268	+				+0.5
4,780,268	+				-0.9
4,780,268	+				+1.0
4,780,268	+				+1.4
4,780,268	+				+0.3
4,780,268	+				+0.1
4,780,268	+				-0.5
4,780,268	+				+1.1
4,780,268	+				-0.1
4,780,268	+				+0.3
4,780,269	-				+0.4
4,780,269	-				+0.0
4,780,269	-				+2.6
4,780,269	-				+0.4
4,780,269	-				+1.8
4,780,269	-				-1.5
4,780,269	-				+0.1
4,780,269	-				-2.2
4,780,269	-				-0.2
4,780,269	-				+0.5
4,780,269	-				+1.1
4,780,269	-				-1.6
4,780,269	-				+0.4
4,780,270	+				-0.2
4,780,284	+				-0.2
4,780,284	+				+0.2
4,780,284	+				+0.7
4,780,284	+				-0.9
4,780,284	+				-1.3
4,780,284	+				-2.9
4,780,285	-				+2.1
4,780,285	-				+0.9
4,780,285	-				-1.7
4,780,285	-				-1.3
4,780,285	-				+0.1
4,780,286	+				-0.5
4,780,321	+				+2.9
4,780,322	-				-1.5
4,780,322	-				+0.1
4,780,322	-				+1.0
4,780,356	+				-1.7
4,780,390	+				-1.9
4,780,391	-				+1.0
4,780,391	-				+0.9
4,780,412	+				-0.6
4,780,413	-				+1.0
4,780,413	-				+1.7
4,780,423	+				-1.2
4,780,423	+				+0.2
4,780,423	+				-0.9
4,780,423	+				-0.5
4,780,423	+				+1.9
4,780,423	+				-0.3
4,780,424	-				+1.5
4,780,424	-				+1.2
4,780,424	-				-1.0
4,780,424	-				+0.1
4,780,424	-				-0.2
4,780,424	-				+0.3
4,780,494	+				+1.0
4,780,494	+				-2.8
4,780,494	+				+1.3
4,780,495	-				-0.9
4,780,495	-				-0.4
4,780,495	-				+0.6
4,780,495	-				+0.5
4,780,495	-				-0.5
4,780,604	+		DZA65_RS22110	0.16	+0.1
4,780,605	-		DZA65_RS22110	0.16	+0.1
4,780,605	-		DZA65_RS22110	0.16	-0.4
4,780,605	-		DZA65_RS22110	0.16	-1.9
4,780,608	+		DZA65_RS22110	0.17	+1.0
4,780,608	+		DZA65_RS22110	0.17	-0.8
4,780,608	+		DZA65_RS22110	0.17	+1.9
4,780,608	+		DZA65_RS22110	0.17	-2.7
4,780,608	+		DZA65_RS22110	0.17	-1.7
4,780,608	+		DZA65_RS22110	0.17	-0.7
4,780,608	+		DZA65_RS22110	0.17	-1.7
4,780,608	+		DZA65_RS22110	0.17	+0.3
4,780,608	+		DZA65_RS22110	0.17	-0.2
4,780,608	+		DZA65_RS22110	0.17	-0.2
4,780,608	+		DZA65_RS22110	0.17	-0.9
4,780,608	+		DZA65_RS22110	0.17	+0.5
4,780,608	+		DZA65_RS22110	0.17	-0.9
4,780,608	+		DZA65_RS22110	0.17	-2.0
4,780,608	+		DZA65_RS22110	0.17	+1.5
4,780,608	+		DZA65_RS22110	0.17	-2.7
4,780,608	+		DZA65_RS22110	0.17	+1.3
4,780,608	+		DZA65_RS22110	0.17	-0.2
4,780,608	+		DZA65_RS22110	0.17	-1.8
4,780,608	+		DZA65_RS22110	0.17	+0.6
4,780,608	+		DZA65_RS22110	0.17	-0.1
4,780,608	+		DZA65_RS22110	0.17	-0.9
4,780,608	+		DZA65_RS22110	0.17	+0.1
4,780,608	+		DZA65_RS22110	0.17	-1.9
4,780,608	+		DZA65_RS22110	0.17	-1.2
4,780,608	+		DZA65_RS22110	0.17	+0.8
4,780,608	+		DZA65_RS22110	0.17	+0.5
4,780,608	+		DZA65_RS22110	0.17	-0.1
4,780,608	+		DZA65_RS22110	0.17	-1.5
4,780,608	+		DZA65_RS22110	0.17	-1.5
4,780,608	+		DZA65_RS22110	0.17	+1.9
4,780,608	+		DZA65_RS22110	0.17	-0.2
4,780,608	+		DZA65_RS22110	0.17	-0.1
4,780,608	+		DZA65_RS22110	0.17	+3.6
4,780,608	+		DZA65_RS22110	0.17	+0.4
4,780,608	+		DZA65_RS22110	0.17	-0.0
4,780,608	+		DZA65_RS22110	0.17	-0.5
4,780,609	-				-0.5
4,780,609	-		DZA65_RS22110	0.17	+1.8
4,780,609	-		DZA65_RS22110	0.17	-0.7
4,780,609	-		DZA65_RS22110	0.17	-1.9
4,780,609	-		DZA65_RS22110	0.17	-1.1
4,780,609	-		DZA65_RS22110	0.17	-0.5
4,780,609	-		DZA65_RS22110	0.17	-0.1
4,780,609	-		DZA65_RS22110	0.17	-0.1
4,780,609	-		DZA65_RS22110	0.17	-0.0
4,780,609	-		DZA65_RS22110	0.17	+2.2
4,780,609	-		DZA65_RS22110	0.17	+1.5
4,780,609	-		DZA65_RS22110	0.17	-1.3
4,780,609	-		DZA65_RS22110	0.17	-1.5
4,780,609	-		DZA65_RS22110	0.17	+0.7
4,780,609	-		DZA65_RS22110	0.17	+0.5
4,780,609	-		DZA65_RS22110	0.17	+0.2
4,780,609	-		DZA65_RS22110	0.17	-0.3
4,780,609	-		DZA65_RS22110	0.17	+0.4
4,780,609	-		DZA65_RS22110	0.17	+0.9
4,780,609	-		DZA65_RS22110	0.17	-2.0
4,780,609	-		DZA65_RS22110	0.17	+0.1
4,780,609	-		DZA65_RS22110	0.17	-0.5
4,780,609	-		DZA65_RS22110	0.17	+1.8
4,780,609	-		DZA65_RS22110	0.17	+0.0
4,780,609	-		DZA65_RS22110	0.17	+1.6
4,780,609	-		DZA65_RS22110	0.17	-0.9
4,780,609	-		DZA65_RS22110	0.17	-0.5
4,780,609	-		DZA65_RS22110	0.17	+0.3
4,780,609	-		DZA65_RS22110	0.17	-0.7
4,780,609	-		DZA65_RS22110	0.17	+0.7
4,780,609	-		DZA65_RS22110	0.17	-1.7
4,780,609	-		DZA65_RS22110	0.17	-2.0
4,780,609	-		DZA65_RS22110	0.17	-0.0
4,780,609	-		DZA65_RS22110	0.17	+0.4
4,780,609	-		DZA65_RS22110	0.17	-0.7
4,780,609	-		DZA65_RS22110	0.17	+0.2
4,780,609	-		DZA65_RS22110	0.17	-1.1
4,780,609	-		DZA65_RS22110	0.17	-0.2
4,780,609	-		DZA65_RS22110	0.17	-0.5
4,780,609	-		DZA65_RS22110	0.17	-0.6
4,780,632	+		DZA65_RS22110	0.21	-0.2
4,780,632	+		DZA65_RS22110	0.21	+0.9
4,780,633	-		DZA65_RS22110	0.21	+0.8
4,780,633	-		DZA65_RS22110	0.21	-1.2
4,780,635	+		DZA65_RS22110	0.21	+0.3
4,780,636	-		DZA65_RS22110	0.21	-0.2
4,780,636	-		DZA65_RS22110	0.21	-0.2
4,780,647	+		DZA65_RS22110	0.23	-0.4
4,780,647	+		DZA65_RS22110	0.23	+0.4
4,780,647	+		DZA65_RS22110	0.23	-2.2
4,780,648	-		DZA65_RS22110	0.23	-1.5
4,780,648	-		DZA65_RS22110	0.23	+2.1
4,780,648	-		DZA65_RS22110	0.23	-0.8
4,780,648	-		DZA65_RS22110	0.23	+0.1
4,780,648	-		DZA65_RS22110	0.23	+1.1
4,780,648	-		DZA65_RS22110	0.23	+2.0
4,780,649	+		DZA65_RS22110	0.23	-1.2
4,780,649	+		DZA65_RS22110	0.23	+0.2
4,780,649	+		DZA65_RS22110	0.23	-0.0
4,780,649	+		DZA65_RS22110	0.23	-3.2
4,780,649	+		DZA65_RS22110	0.23	+0.8
4,780,650	-		DZA65_RS22110	0.23	-0.2
4,780,725	+		DZA65_RS22110	0.35	-1.4
4,780,725	+		DZA65_RS22110	0.35	-1.4
4,780,725	+		DZA65_RS22110	0.35	-0.1
4,780,725	+		DZA65_RS22110	0.35	-0.9
4,780,725	+		DZA65_RS22110	0.35	+0.6
4,780,725	+		DZA65_RS22110	0.35	+0.7
4,780,725	+		DZA65_RS22110	0.35	+0.7
4,780,725	+		DZA65_RS22110	0.35	+0.5
4,780,725	+		DZA65_RS22110	0.35	+0.1
4,780,725	+		DZA65_RS22110	0.35	-0.9
4,780,726	-		DZA65_RS22110	0.35	+0.1
4,780,726	-		DZA65_RS22110	0.35	-0.1
4,780,740	+		DZA65_RS22110	0.37	-1.7
4,780,845	+		DZA65_RS22110	0.54	+0.8
4,780,845	+		DZA65_RS22110	0.54	+0.3
4,780,845	+		DZA65_RS22110	0.54	+0.1
4,780,846	-		DZA65_RS22110	0.54	-0.3
4,780,846	-		DZA65_RS22110	0.54	+1.3
4,780,846	-		DZA65_RS22110	0.54	-1.0
4,780,846	-		DZA65_RS22110	0.54	+0.5
4,780,851	+		DZA65_RS22110	0.55	+1.0
4,780,851	+		DZA65_RS22110	0.55	+1.6
4,780,851	+		DZA65_RS22110	0.55	-1.5
4,780,851	+		DZA65_RS22110	0.55	+0.8
4,780,852	-		DZA65_RS22110	0.55	+1.1
4,780,852	-		DZA65_RS22110	0.55	-0.5
4,780,852	-		DZA65_RS22110	0.55	+1.5
4,780,852	-		DZA65_RS22110	0.55	+1.0
4,780,852	-		DZA65_RS22110	0.55	-0.2
4,780,852	-		DZA65_RS22110	0.55	+1.5
4,780,852	-		DZA65_RS22110	0.55	-1.5
4,780,852	-		DZA65_RS22110	0.55	+0.4
4,780,852	-		DZA65_RS22110	0.55	+0.4
4,780,897	+		DZA65_RS22110	0.62	-0.3
4,780,897	+		DZA65_RS22110	0.62	+0.1
4,780,897	+		DZA65_RS22110	0.62	-1.2
4,780,897	+		DZA65_RS22110	0.62	-2.5
4,780,897	+		DZA65_RS22110	0.62	-0.5
4,780,898	-		DZA65_RS22110	0.62	-0.7
4,780,898	-		DZA65_RS22110	0.62	-1.0
4,780,898	-		DZA65_RS22110	0.62	+1.5
4,780,898	-		DZA65_RS22110	0.62	+0.5
4,780,904	-		DZA65_RS22110	0.63	+1.0
4,780,904	-		DZA65_RS22110	0.63	+0.1
4,780,913	+		DZA65_RS22110	0.64	-2.0
4,780,913	+		DZA65_RS22110	0.64	-0.4
4,780,914	-		DZA65_RS22110	0.64	-1.3
4,780,914	-		DZA65_RS22110	0.64	+0.1
4,780,914	-		DZA65_RS22110	0.64	+1.7
4,780,914	-		DZA65_RS22110	0.64	+0.5
4,780,914	-		DZA65_RS22110	0.64	-0.4
4,780,925	+		DZA65_RS22110	0.66	-0.5
4,780,951	+		DZA65_RS22110	0.70	-1.6
4,780,951	+		DZA65_RS22110	0.70	+0.1
4,780,951	+		DZA65_RS22110	0.70	-0.7
4,780,951	+		DZA65_RS22110	0.70	+0.8
4,780,951	+		DZA65_RS22110	0.70	-1.7
4,780,951	+		DZA65_RS22110	0.70	-0.7
4,780,952	-		DZA65_RS22110	0.70	-0.2
4,780,952	-		DZA65_RS22110	0.70	+0.1
4,780,952	-		DZA65_RS22110	0.70	+1.3
4,780,952	-		DZA65_RS22110	0.70	-0.5
4,780,952	-				+0.7
4,781,007	-		DZA65_RS22110	0.79	-2.3
4,781,075	+		DZA65_RS22110	0.90	+0.1
4,781,076	-		DZA65_RS22110	0.90	-2.2
4,781,106	+				-0.7
4,781,106	+				+1.4
4,781,106	+				+1.5
4,781,106	+				-0.5
4,781,107	-				+3.1
4,781,107	-				+1.0
4,781,140	-				+0.5
4,781,153	+				-1.0
4,781,153	+				+1.6
4,781,153	+				+0.1
4,781,154	-				-0.3
4,781,160	+				-1.1
4,781,161	-				-0.0
4,781,166	+				+0.6
4,781,166	+				-2.0
4,781,167	-				+0.5
4,781,167	-				+1.5
4,781,167	-				+0.1
4,781,242	+		DZA65_RS22115	0.12	+1.1
4,781,242	+		DZA65_RS22115	0.12	+0.5
4,781,242	+		DZA65_RS22115	0.12	+0.3
4,781,242	+		DZA65_RS22115	0.12	-1.8
4,781,243	-		DZA65_RS22115	0.12	+0.4
4,781,243	-		DZA65_RS22115	0.12	-2.0
4,781,243	-		DZA65_RS22115	0.12	+0.5
4,781,291	+		DZA65_RS22115	0.18	+0.1
4,781,313	+		DZA65_RS22115	0.21	-0.3
4,781,314	-		DZA65_RS22115	0.21	+1.0
4,781,400	+		DZA65_RS22115	0.32	-1.3
4,781,400	+		DZA65_RS22115	0.32	-0.8
4,781,400	+		DZA65_RS22115	0.32	+0.4
4,781,400	+		DZA65_RS22115	0.32	-0.6
4,781,400	+		DZA65_RS22115	0.32	+1.2
4,781,400	+		DZA65_RS22115	0.32	+0.1
4,781,475	+		DZA65_RS22115	0.41	+1.1
4,781,584	+		DZA65_RS22115	0.55	+1.1
4,781,584	+		DZA65_RS22115	0.55	-0.1
4,781,591	+		DZA65_RS22115	0.56	+0.5
4,781,591	+		DZA65_RS22115	0.56	-0.6
4,781,591	+		DZA65_RS22115	0.56	-0.5
4,781,591	+		DZA65_RS22115	0.56	+0.1
4,781,591	+		DZA65_RS22115	0.56	+0.7
4,781,591	+		DZA65_RS22115	0.56	+1.7
4,781,591	+		DZA65_RS22115	0.56	-2.7
4,781,591	+		DZA65_RS22115	0.56	+0.1
4,781,591	+		DZA65_RS22115	0.56	-3.0
4,781,591	+		DZA65_RS22115	0.56	+0.9
4,781,591	+		DZA65_RS22115	0.56	+0.7
4,781,591	+		DZA65_RS22115	0.56	+0.5
4,781,591	+		DZA65_RS22115	0.56	+0.4
4,781,591	+		DZA65_RS22115	0.56	+1.4
4,781,591	+		DZA65_RS22115	0.56	+0.1
4,781,591	+		DZA65_RS22115	0.56	+0.3
4,781,591	+		DZA65_RS22115	0.56	+0.6
4,781,591	+		DZA65_RS22115	0.56	+0.9
4,781,591	+		DZA65_RS22115	0.56	-1.0
4,781,591	+		DZA65_RS22115	0.56	+1.4
4,781,591	+		DZA65_RS22115	0.56	-1.5
4,781,591	+		DZA65_RS22115	0.56	-0.6
4,781,591	+		DZA65_RS22115	0.56	-0.9
4,781,591	+		DZA65_RS22115	0.56	-1.0
4,781,592	-		DZA65_RS22115	0.56	+0.4
4,781,592	-		DZA65_RS22115	0.56	-0.9
4,781,592	-		DZA65_RS22115	0.56	-0.2
4,781,592	-		DZA65_RS22115	0.56	-0.7
4,781,592	-		DZA65_RS22115	0.56	-0.5
4,781,592	-		DZA65_RS22115	0.56	-0.4
4,781,592	-		DZA65_RS22115	0.56	-0.2
4,781,592	-		DZA65_RS22115	0.56	-0.7
4,781,592	-		DZA65_RS22115	0.56	+1.1
4,781,592	-		DZA65_RS22115	0.56	+0.4
4,781,592	-		DZA65_RS22115	0.56	+0.0
4,781,592	-		DZA65_RS22115	0.56	+0.5
4,781,592	-		DZA65_RS22115	0.56	+0.9
4,781,592	-		DZA65_RS22115	0.56	-0.0
4,781,592	-		DZA65_RS22115	0.56	-1.2
4,781,592	-		DZA65_RS22115	0.56	+0.1
4,781,592	-		DZA65_RS22115	0.56	-1.9
4,781,592	-		DZA65_RS22115	0.56	+1.1
4,781,592	-		DZA65_RS22115	0.56	+1.0
4,781,592	-		DZA65_RS22115	0.56	-1.6
4,781,592	-		DZA65_RS22115	0.56	+1.9
4,781,592	-		DZA65_RS22115	0.56	-0.9
4,781,592	-		DZA65_RS22115	0.56	-0.2
4,781,592	-		DZA65_RS22115	0.56	+0.9
4,781,592	-		DZA65_RS22115	0.56	-1.7
4,781,593	+		DZA65_RS22115	0.56	+0.3
4,781,593	+		DZA65_RS22115	0.56	-0.5
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4,781,953	+				+0.4
4,781,991	+				+2.1
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4,782,335	+		DZA65_RS22120	0.59	+0.1
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4,782,593	+				+0.3
4,782,593	+				+2.0
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4,782,599	+				+0.3
4,782,599	+				-1.0
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4,782,600	-				+0.1
4,782,652	+				-0.2
4,782,652	+				-1.9
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4,782,657	-				-1.2
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