Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21645

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,678,404	+		DZA65_RS21640	0.24	-2.7
4,678,427	+		DZA65_RS21640	0.26	-3.7
4,678,427	+		DZA65_RS21640	0.26	-2.1
4,678,428	-		DZA65_RS21640	0.26	+0.5
4,678,428	-		DZA65_RS21640	0.26	+0.7
4,678,428	-		DZA65_RS21640	0.26	+0.4
4,678,428	-		DZA65_RS21640	0.26	+0.1
4,678,463	-		DZA65_RS21640	0.30	+0.3
4,678,509	+		DZA65_RS21640	0.34	+0.6
4,678,509	+		DZA65_RS21640	0.34	-1.9
4,678,509	+		DZA65_RS21640	0.34	+0.5
4,678,509	+		DZA65_RS21640	0.34	-0.5
4,678,509	+		DZA65_RS21640	0.34	+1.6
4,678,509	+		DZA65_RS21640	0.34	-1.5
4,678,509	+		DZA65_RS21640	0.34	-0.5
4,678,509	+		DZA65_RS21640	0.34	-2.2
4,678,509	+		DZA65_RS21640	0.34	-0.8
4,678,509	+		DZA65_RS21640	0.34	+0.1
4,678,510	-		DZA65_RS21640	0.35	-0.3
4,678,510	-		DZA65_RS21640	0.35	-0.7
4,678,510	-		DZA65_RS21640	0.35	+0.7
4,678,510	-		DZA65_RS21640	0.35	+0.5
4,678,510	-		DZA65_RS21640	0.35	-0.2
4,678,510	-		DZA65_RS21640	0.35	+0.1
4,678,524	-		DZA65_RS21640	0.36	-0.4
4,678,535	+		DZA65_RS21640	0.37	-0.2
4,678,535	+		DZA65_RS21640	0.37	-0.5
4,678,535	+		DZA65_RS21640	0.37	-1.3
4,678,536	-		DZA65_RS21640	0.37	+0.4
4,678,536	-		DZA65_RS21640	0.37	+1.6
4,678,536	-		DZA65_RS21640	0.37	+0.3
4,678,536	-		DZA65_RS21640	0.37	+1.4
4,678,536	-		DZA65_RS21640	0.37	+2.2
4,678,573	+		DZA65_RS21640	0.41	-0.7
4,678,573	+		DZA65_RS21640	0.41	+0.1
4,678,808	+		DZA65_RS21640	0.66	+1.0
4,678,809	-		DZA65_RS21640	0.66	-0.2
4,678,809	-		DZA65_RS21640	0.66	-0.5
4,678,854	+		DZA65_RS21640	0.71	-0.5
4,679,060	-				-0.7
4,679,060	-				+1.1
4,679,123	+				-0.5
4,679,124	-				+1.1
4,679,124	-				+0.2
4,679,124	-				+0.7
4,679,186	+				-0.7
4,679,206	-				-0.4
4,679,206	-				-1.2
4,679,206	-				+0.4
4,679,244	+				-0.0
4,679,245	-				+0.7
4,679,325	-				+0.4
4,679,325	-				+0.3
4,679,325	-				+0.8
4,679,328	+				+1.3
4,679,328	+				-0.1
4,679,328	+				-0.3
4,679,328	+				-1.2
4,679,328	+				-0.2
4,679,329	-				-1.5
4,679,329	-				+1.9
4,679,350	+				-1.2
4,679,351	-				-1.1
4,679,421	+		DZA65_RS21645	0.13	-0.5
4,679,421	+		DZA65_RS21645	0.13	+0.7
4,679,421	+		DZA65_RS21645	0.13	-1.7
4,679,422	-		DZA65_RS21645	0.13	+0.7
4,679,423	+		DZA65_RS21645	0.13	-0.5
4,679,423	+		DZA65_RS21645	0.13	+1.1
4,679,423	+		DZA65_RS21645	0.13	+0.8
4,679,423	+		DZA65_RS21645	0.13	-0.9
4,679,423	+		DZA65_RS21645	0.13	-0.3
4,679,423	+		DZA65_RS21645	0.13	+0.9
4,679,423	+		DZA65_RS21645	0.13	+0.1
4,679,423	+		DZA65_RS21645	0.13	-0.5
4,679,424	-		DZA65_RS21645	0.14	+2.3
4,679,424	-		DZA65_RS21645	0.14	+1.0
4,679,424	-		DZA65_RS21645	0.14	-0.3
4,679,424	-		DZA65_RS21645	0.14	+0.1
4,679,424	-		DZA65_RS21645	0.14	+2.1
4,679,424	-		DZA65_RS21645	0.14	+0.8
4,679,424	-		DZA65_RS21645	0.14	+0.6
4,679,424	-		DZA65_RS21645	0.14	-0.5
4,679,424	-		DZA65_RS21645	0.14	+1.7
4,679,424	-		DZA65_RS21645	0.14	-1.2
4,679,424	-		DZA65_RS21645	0.14	+1.2
4,679,490	+		DZA65_RS21645	0.22	+0.9
4,679,650	-		DZA65_RS21645	0.44	-1.0
4,679,745	-		DZA65_RS21645	0.57	-1.2
4,679,745	-		DZA65_RS21645	0.57	-1.7
4,680,099	+				+0.6
4,680,099	+				+0.5
4,680,099	+				-0.2
4,680,099	+				-0.5
4,680,099	+				+1.1
4,680,099	+				-1.9
4,680,099	+				-0.5
4,680,100	-				-1.3
4,680,100	-				+0.1
4,680,100	-				-0.9
4,680,100	-				+0.1
4,680,100	-				-1.3
4,680,101	+				-0.5
4,680,101	+				+0.1
4,680,101	+				+0.3
4,680,101	+				-2.1
4,680,101	+				+0.1
4,680,101	+				-0.2
4,680,101	+				+1.5
4,680,182	+		DZA65_RS21650	0.11	+1.7
4,680,182	+		DZA65_RS21650	0.11	+0.2
4,680,183	-		DZA65_RS21650	0.11	-1.1
4,680,437	+		DZA65_RS21650	0.35	-0.8
4,680,473	-		DZA65_RS21650	0.38	+0.1
4,680,473	-		DZA65_RS21650	0.38	+0.8
4,680,473	-		DZA65_RS21650	0.38	+1.4
4,680,571	+		DZA65_RS21650	0.47	+0.9
4,680,571	+		DZA65_RS21650	0.47	-0.4
4,680,571	+		DZA65_RS21650	0.47	-0.0
4,680,571	+		DZA65_RS21650	0.47	-0.3
4,680,572	-		DZA65_RS21650	0.47	-1.1
4,680,572	-		DZA65_RS21650	0.47	+1.9
4,680,572	-		DZA65_RS21650	0.47	-1.1
4,680,780	-		DZA65_RS21650	0.67	+1.9
4,680,780	-		DZA65_RS21650	0.67	+0.1
4,680,845	-		DZA65_RS21650	0.73	+0.2
4,680,859	+		DZA65_RS21650	0.74	-0.9
4,680,860	-		DZA65_RS21650	0.74	+0.9
4,680,860	-		DZA65_RS21650	0.74	-1.1
4,680,877	+		DZA65_RS21650	0.76	-0.8
4,680,878	-		DZA65_RS21650	0.76	+1.1
4,680,886	+		DZA65_RS21650	0.76	+0.0
4,680,887	-		DZA65_RS21650	0.77	-1.2
4,680,908	+		DZA65_RS21650	0.78	-1.2
4,680,955	+		DZA65_RS21650	0.83	+1.6
4,680,955	+		DZA65_RS21650	0.83	-1.1
4,680,955	+		DZA65_RS21650	0.83	-0.2
4,680,955	+		DZA65_RS21650	0.83	+0.5
4,680,955	+		DZA65_RS21650	0.83	-0.0
4,680,955	+		DZA65_RS21650	0.83	+0.5
4,680,955	+		DZA65_RS21650	0.83	-0.2
4,680,956	-		DZA65_RS21650	0.83	-0.4
4,680,956	-		DZA65_RS21650	0.83	-1.1
4,680,956	-		DZA65_RS21650	0.83	-0.8
4,680,956	-		DZA65_RS21650	0.83	+0.3
4,680,956	-		DZA65_RS21650	0.83	+0.8
4,680,956	-		DZA65_RS21650	0.83	-1.7
4,680,956	-		DZA65_RS21650	0.83	-0.9
4,680,956	-		DZA65_RS21650	0.83	-0.6
4,680,956	-		DZA65_RS21650	0.83	+0.8
4,680,956	-		DZA65_RS21650	0.83	+1.4
4,680,956	-		DZA65_RS21650	0.83	+1.4
4,680,956	-		DZA65_RS21650	0.83	-0.3
4,680,960	-		DZA65_RS21650	0.83	-0.5