Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21625

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,675,474	+		DZA65_RS21620	0.57	+0.7
4,675,474	+		DZA65_RS21620	0.57	+0.1
4,675,474	+		DZA65_RS21620	0.57	-1.6
4,675,474	+		DZA65_RS21620	0.57	+0.4
4,675,474	+		DZA65_RS21620	0.57	+0.8
4,675,474	+		DZA65_RS21620	0.57	-0.3
4,675,474	+		DZA65_RS21620	0.57	+0.9
4,675,474	+		DZA65_RS21620	0.57	-0.5
4,675,475	-		DZA65_RS21620	0.57	+0.2
4,675,475	-		DZA65_RS21620	0.57	+0.2
4,675,475	-		DZA65_RS21620	0.57	+0.5
4,675,475	-		DZA65_RS21620	0.57	+0.5
4,675,477	+		DZA65_RS21620	0.57	+0.1
4,675,477	+		DZA65_RS21620	0.57	+0.0
4,675,477	+		DZA65_RS21620	0.57	+0.2
4,675,477	+		DZA65_RS21620	0.57	+2.7
4,675,477	+		DZA65_RS21620	0.57	+0.5
4,675,478	-		DZA65_RS21620	0.57	-1.1
4,675,478	-		DZA65_RS21620	0.57	+0.4
4,675,478	-		DZA65_RS21620	0.57	+0.6
4,675,478	-		DZA65_RS21620	0.57	+1.7
4,675,480	+		DZA65_RS21620	0.57	+0.4
4,675,480	+		DZA65_RS21620	0.57	-0.3
4,675,480	+		DZA65_RS21620	0.57	+0.5
4,675,480	+		DZA65_RS21620	0.57	-0.2
4,675,480	+		DZA65_RS21620	0.57	+1.3
4,675,480	+		DZA65_RS21620	0.57	+1.8
4,675,480	+		DZA65_RS21620	0.57	+1.4
4,675,480	+		DZA65_RS21620	0.57	+0.9
4,675,481	-		DZA65_RS21620	0.57	+2.1
4,675,481	-		DZA65_RS21620	0.57	+1.8
4,675,481	-		DZA65_RS21620	0.57	-0.5
4,675,495	+		DZA65_RS21620	0.57	-0.5
4,675,495	+		DZA65_RS21620	0.57	-0.2
4,675,496	-		DZA65_RS21620	0.58	+0.6
4,675,539	+		DZA65_RS21620	0.59	-0.0
4,675,539	+		DZA65_RS21620	0.59	+0.4
4,675,540	-		DZA65_RS21620	0.60	+1.1
4,675,540	-		DZA65_RS21620	0.60	-1.7
4,675,895	-		DZA65_RS21620	0.76	-0.2
4,675,895	-		DZA65_RS21620	0.76	+1.3
4,675,989	-		DZA65_RS21620	0.80	+1.4
4,676,023	+		DZA65_RS21620	0.81	-1.9
4,676,023	+		DZA65_RS21620	0.81	-0.4
4,676,023	+		DZA65_RS21620	0.81	-0.1
4,676,023	+		DZA65_RS21620	0.81	+0.6
4,676,024	-		DZA65_RS21620	0.82	+0.3
4,676,024	-		DZA65_RS21620	0.82	+1.8
4,676,024	-		DZA65_RS21620	0.82	-0.0
4,676,224	+				+1.4
4,676,224	+				-0.5
4,676,224	+				-0.0
4,676,224	+				+0.7
4,676,224	+				+0.1
4,676,224	+				+0.9
4,676,224	+				+2.2
4,676,224	+				+0.1
4,676,224	+				-2.4
4,676,224	+				+0.3
4,676,224	+				-0.5
4,676,224	+				-0.6
4,676,224	+				+0.8
4,676,224	+				-0.1
4,676,224	+				-0.3
4,676,224	+				-1.3
4,676,224	+				+1.9
4,676,224	+				-0.6
4,676,224	+				+1.1
4,676,224	+				+0.1
4,676,224	+				+0.1
4,676,224	+				-0.5
4,676,224	+				+2.4
4,676,224	+				-1.1
4,676,225	-				+1.1
4,676,225	-				-2.7
4,676,225	-				+0.5
4,676,225	-				+0.7
4,676,225	-				-0.1
4,676,225	-				-0.1
4,676,225	-				-0.5
4,676,225	-				-1.4
4,676,225	-				-0.3
4,676,225	-				+2.2
4,676,225	-				-1.1
4,676,225	-				-1.2
4,676,225	-				-0.3
4,676,225	-				+1.0
4,676,225	-				+0.4
4,676,225	-				+0.1
4,676,225	-				-0.8
4,676,225	-				-0.6
4,676,225	-				+0.3
4,676,225	-				-0.5
4,676,225	-				-2.6
4,676,225	-				-0.1
4,676,273	-				-0.8
4,676,293	+				-2.8
4,676,293	+				+0.8
4,676,293	+				+0.1
4,676,293	+				+2.0
4,676,293	+				-0.7
4,676,293	+				+0.1
4,676,293	+				-0.1
4,676,293	+				-1.5
4,676,293	+				+0.7
4,676,293	+				-1.0
4,676,293	+				+0.1
4,676,293	+				+1.7
4,676,293	+				+2.4
4,676,293	+				-0.4
4,676,293	+				-1.0
4,676,293	+				+0.1
4,676,294	-				-0.7
4,676,294	-				+0.5
4,676,294	-				+0.0
4,676,294	-				-2.4
4,676,294	-				+0.1
4,676,294	-				-2.1
4,676,294	-				+1.0
4,676,294	-				-0.9
4,676,294	-				+1.1
4,676,294	-				-0.6
4,676,294	-				+1.6
4,676,294	-				-0.8
4,676,294	-				+0.3
4,676,294	-				-0.9
4,676,294	-				-0.7
4,676,294	-				+0.1
4,676,294	-				+0.2
4,676,315	-				-0.9
4,676,338	-				+0.7
4,676,376	+				-0.0
4,676,376	+				-0.1
4,676,376	+				+0.3
4,676,376	+				-0.3
4,676,388	+				+0.1
4,676,388	+				-0.2
4,676,389	-				-0.1
4,676,419	+				+3.1
4,676,419	+				-0.9
4,676,419	+				+3.3
4,676,419	+				+0.5
4,676,419	+				+0.8
4,676,419	+				+0.1
4,676,419	+				-0.5
4,676,419	+				+1.7
4,676,420	-				+0.2
4,676,420	-				+0.3
4,676,420	-				+0.7
4,676,420	-				-1.9
4,676,420	-				+1.7
4,676,420	-				+0.7
4,676,420	-				-1.6
4,676,420	-				+0.0
4,676,420	-				-2.6
4,676,422	+				+0.6
4,676,429	-				+0.4
4,676,429	-				-0.6
4,676,429	-				+0.4
4,676,438	+				+0.8
4,676,439	-				-1.7
4,676,440	-				-0.6
4,676,508	+		DZA65_RS21625	0.14	-0.7
4,676,575	-		DZA65_RS21625	0.23	-0.2
4,676,617	+		DZA65_RS21625	0.28	-0.9
4,676,618	-		DZA65_RS21625	0.28	-1.2
4,676,722	+		DZA65_RS21625	0.42	+3.9
4,676,722	+		DZA65_RS21625	0.42	+1.0
4,676,731	+		DZA65_RS21625	0.43	+0.1
4,676,731	+		DZA65_RS21625	0.43	+1.2
4,676,731	+		DZA65_RS21625	0.43	-3.1
4,676,731	+		DZA65_RS21625	0.43	+0.1
4,676,731	+		DZA65_RS21625	0.43	-0.1
4,676,732	-		DZA65_RS21625	0.43	-0.2
4,676,732	-		DZA65_RS21625	0.43	+0.1
4,676,732	-		DZA65_RS21625	0.43	-0.5
4,676,732	-		DZA65_RS21625	0.43	-0.3
4,676,732	-		DZA65_RS21625	0.43	-2.0
4,676,799	+		DZA65_RS21625	0.52	-0.3
4,676,799	+		DZA65_RS21625	0.52	+0.2
4,676,800	-		DZA65_RS21625	0.52	+0.1
4,676,800	-		DZA65_RS21625	0.52	+0.3
4,676,814	+		DZA65_RS21625	0.53	+0.1
4,676,814	+		DZA65_RS21625	0.53	+1.5
4,676,814	+		DZA65_RS21625	0.53	+1.4
4,676,814	+		DZA65_RS21625	0.53	+0.8
4,676,814	+		DZA65_RS21625	0.53	+1.1
4,676,814	+		DZA65_RS21625	0.53	-0.1
4,676,814	+		DZA65_RS21625	0.53	+1.5
4,676,815	-		DZA65_RS21625	0.54	-0.4
4,676,815	-		DZA65_RS21625	0.54	+1.6
4,676,815	-		DZA65_RS21625	0.54	-2.4
4,676,815	-		DZA65_RS21625	0.54	-0.8
4,676,815	-		DZA65_RS21625	0.54	+0.2
4,676,815	-		DZA65_RS21625	0.54	+0.9
4,676,950	+		DZA65_RS21625	0.71	-1.5
4,676,950	+		DZA65_RS21625	0.71	+1.1
4,676,961	+		DZA65_RS21625	0.72	-1.7
4,676,962	-		DZA65_RS21625	0.73	+2.0
4,676,997	+		DZA65_RS21625	0.77	+0.8
4,676,998	-		DZA65_RS21625	0.77	+0.4
4,677,046	+		DZA65_RS21625	0.83	+1.4
4,677,046	+		DZA65_RS21625	0.83	-0.8
4,677,046	+		DZA65_RS21625	0.83	+0.8
4,677,046	+		DZA65_RS21625	0.83	-0.3
4,677,046	+		DZA65_RS21625	0.83	-0.3
4,677,046	+		DZA65_RS21625	0.83	-0.6
4,677,047	-		DZA65_RS21625	0.84	+0.1
4,677,047	-		DZA65_RS21625	0.84	-0.7
4,677,047	-		DZA65_RS21625	0.84	-0.2
4,677,047	-		DZA65_RS21625	0.84	+0.2
4,677,047	-		DZA65_RS21625	0.84	+1.1
4,677,047	-		DZA65_RS21625	0.84	-0.0
4,677,047	-		DZA65_RS21625	0.84	-1.7
4,677,047	-		DZA65_RS21625	0.84	-0.2
4,677,047	-		DZA65_RS21625	0.84	+0.6
4,677,102	+				-0.1
4,677,253	+				+1.0
4,677,253	+				+0.6
4,677,254	-				-1.7
4,677,254	-				+0.3
4,677,299	+		DZA65_RS21630	0.18	+0.1
4,677,299	+		DZA65_RS21630	0.18	-0.5
4,677,299	+		DZA65_RS21630	0.18	+0.2
4,677,300	-		DZA65_RS21630	0.19	+0.3
4,677,300	-		DZA65_RS21630	0.19	-0.5
4,677,300	-		DZA65_RS21630	0.19	-0.3
4,677,407	-		DZA65_RS21630	0.42	-2.0
4,677,490	+		DZA65_RS21630	0.60	-1.7
4,677,490	+		DZA65_RS21630	0.60	-0.1
4,677,491	-		DZA65_RS21630	0.60	+1.8
4,677,491	-		DZA65_RS21630	0.60	+1.4
4,677,491	-		DZA65_RS21630	0.60	+1.6
4,677,491	-		DZA65_RS21630	0.60	-0.3
4,677,491	-		DZA65_RS21630	0.60	-0.4
4,677,526	+		DZA65_RS21630	0.67	-1.0
4,677,623	+		DZA65_RS21630	0.88	+0.3
4,677,626	+		DZA65_RS21630	0.89	-0.2
4,677,626	+		DZA65_RS21630	0.89	-1.2
4,677,626	+		DZA65_RS21630	0.89	+1.9
4,677,626	+		DZA65_RS21630	0.89	-0.5
4,677,626	+		DZA65_RS21630	0.89	-1.7
4,677,626	+		DZA65_RS21630	0.89	-1.1
4,677,626	+		DZA65_RS21630	0.89	+1.4
4,677,626	+		DZA65_RS21630	0.89	-0.5
4,677,626	+		DZA65_RS21630	0.89	-0.4
4,677,627	-		DZA65_RS21630	0.89	-0.3
4,677,627	-		DZA65_RS21630	0.89	+0.7
4,677,627	-		DZA65_RS21630	0.89	+0.6
4,677,658	+				-0.3
4,677,659	-				+2.1
4,677,659	-				-0.8
4,677,668	+				-0.5
4,677,668	+				+0.0
4,677,680	+				-0.2
4,677,680	+				-1.7
4,677,681	-				-0.5
4,677,681	-				-0.7
4,677,681	-				+0.7
4,677,681	-				+0.9
4,677,681	-				+0.7
4,677,691	-				-0.5
4,677,712	-				+1.0
4,677,712	-				-0.5
4,677,712	-				+1.1
4,677,713	+				+1.2
4,677,750	-				+0.1
4,677,798	+				+0.1
4,677,810	+				-0.1
4,677,810	+				-0.7
4,677,811	-				-2.2
4,677,811	-				+0.6
4,677,811	-				-1.2
4,677,854	+				+1.0
4,677,855	-				-0.9
4,677,857	+				+1.4
4,677,857	+				-2.1
4,677,858	-				+3.7
4,677,858	-				+0.5
4,677,858	-				+0.9
4,677,918	-		DZA65_RS21635	0.19	+0.5
4,677,951	+		DZA65_RS21635	0.32	-0.6
4,677,951	+		DZA65_RS21635	0.32	+0.8
4,677,951	+		DZA65_RS21635	0.32	+0.2
4,677,951	+		DZA65_RS21635	0.32	+0.4
4,677,951	+		DZA65_RS21635	0.32	-1.1
4,677,951	+		DZA65_RS21635	0.32	-1.8
4,677,952	-		DZA65_RS21635	0.32	-2.2
4,677,955	-		DZA65_RS21635	0.33	-1.2
4,677,978	+		DZA65_RS21635	0.42	-1.2
4,677,978	+		DZA65_RS21635	0.42	-0.0
4,677,978	+		DZA65_RS21635	0.42	-0.7
4,677,978	+		DZA65_RS21635	0.42	-1.2
4,677,979	-		DZA65_RS21635	0.43	+0.9
4,678,018	-		DZA65_RS21635	0.57	+0.1
4,678,051	+		DZA65_RS21635	0.70	-0.5
4,678,051	+		DZA65_RS21635	0.70	-1.5
4,678,052	-		DZA65_RS21635	0.70	+0.1
4,678,052	-		DZA65_RS21635	0.70	+3.6
4,678,113	+				+0.6
4,678,114	-				-1.9